Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 9.1e-262 906.4 458 100.0
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 9.0e-209 730.3 388 94.8
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 3.4e-192 675.2 452 78.3
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 1.9e-190 669.5 455 76.3
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 2.7e-189 665.6 455 74.9
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 1.8e-188 662.9 454 73.8
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 1.8e-188 662.9 468 73.9
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 2.3e-188 662.5 457 74.8
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 1.9e-187 659.4 412 80.1
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 5.7e-187 657.9 387 84.0
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.3e-186 656.8 454 74.7
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 4.8e-186 654.8 455 75.2
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 1.4e-185 653.3 458 74.5
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 6.9e-185 651.0 394 81.5
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 6.9e-185 651.0 454 73.6
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 1.7e-183 646.4 455 74.1
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 1.7e-183 646.4 454 74.2
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 2.2e-183 646.0 457 73.3
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 3.8e-183 645.2 422 78.9
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 5.0e-183 644.8 455 73.4
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 1.1e-182 643.7 455 73.8
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 7.2e-182 641.0 455 73.0
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 7.2e-182 641.0 455 73.2
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 2.7e-181 639.0 451 72.9
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 3.6e-181 638.6 463 72.4
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 3.0e-180 635.6 374 83.7
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 3.9e-180 635.2 461 72.2
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 3.9e-180 635.2 395 78.7
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 1.1e-179 633.6 451 73.2
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 1.5e-179 633.3 460 72.4
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 1.5e-179 633.3 468 70.3
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 3.3e-179 632.1 451 72.7
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 3.3e-179 632.1 429 76.5
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 4.3e-179 631.7 392 79.8
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 1.6e-178 629.8 461 72.2
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 1.6e-178 629.8 417 76.5
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 2.2e-178 629.4 458 73.6
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 4.1e-177 625.2 392 78.6
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 1.2e-176 623.6 392 78.3
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 1.0e-175 620.5 521 65.3
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 1.3e-175 620.2 432 74.5
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 1.7e-175 619.8 451 72.1
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 6.5e-175 617.8 496 67.3
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 5.5e-174 614.8 408 75.5
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 9.4e-174 614.0 373 80.7
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 1.6e-173 613.2 426 74.2
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 1.4e-172 610.1 405 75.8
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 1.4e-172 610.1 488 68.2
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 1.8e-172 609.8 400 77.0
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 2.3e-172 609.4 400 76.8
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 1.5e-171 606.7 441 72.3
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 5.7e-171 604.7 432 72.7
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 7.4e-171 604.4 429 73.0
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 1.1e-169 600.5 386 78.0
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 1.8e-169 599.7 455 68.6
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 2.4e-169 599.4 403 75.2
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 9.1e-169 597.4 478 67.8
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 2.0e-168 596.3 477 68.1
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 5.9e-168 594.7 473 68.1
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 5.9e-168 594.7 593 58.5
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.0e-167 594.0 391 77.5
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 5.0e-167 591.7 426 71.4
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 1.4e-166 590.1 381 78.7
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 7.2e-166 587.8 478 67.2
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 1.2e-165 587.0 516 62.4
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 4.4e-163 578.6 403 73.7
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 1.7e-159 566.6 383 77.0
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 4.2e-158 562.0 430 69.1
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 5.5e-158 561.6 354 78.8
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 4.0e-156 555.4 406 71.9
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 2.0e-155 553.1 499 62.1
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 5.7e-155 551.6 402 69.4
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 9.7e-155 550.8 469 64.8
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 4.8e-154 548.5 412 69.4
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 1.2e-152 543.9 343 80.8
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 1.6e-152 543.5 420 67.9
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 5.7e-147 525.0 386 67.9
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 9.8e-147 524.2 409 66.5
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.7e-146 523.5 386 69.4
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 1.0e-143 514.2 398 67.3
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 2.3e-143 513.1 405 67.2
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 1.1e-142 510.8 455 60.2
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.1e-142 510.8 460 62.8
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 5.5e-142 508.4 434 66.6
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 5.2e-140 501.9 454 60.8
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.5e-139 500.4 459 62.3
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 1.4e-137 493.8 358 71.5
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 4.1e-137 492.3 391 66.5
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 8.6e-135 484.6 251 98.8
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 3.6e-133 479.2 292 80.8
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 9.8e-123 444.5 365 67.9
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 1.3e-122 444.1 394 63.7
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 4.4e-115 419.1 402 53.5
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 2.7e-112 409.8 298 73.8
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 4.6e-112 409.1 400 54.2
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 2.3e-111 406.8 257 78.6
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 3.3e-110 402.9 461 49.2
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 1.9e-105 387.1 256 74.6
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 1.9e-102 377.1 207 89.9
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 5.6e-102 375.6 257 80.5
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 8.1e-101 371.7 249 80.7
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 4.0e-92 342.8 189 89.4
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 2.0e-91 340.5 189 89.9
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 5.5e-81 305.8 530 38.5
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 8.7e-79 298.5 253 70.4
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 9.3e-73 278.5 172 77.9
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 1.1e-70 271.6 185 71.9
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 6.5e-66 255.8 155 81.9
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 2.5e-65 253.8 162 80.9
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 5.1e-63 246.1 206 67.0
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 6.3e-61 239.2 366 44.3
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 6.9e-60 235.7 217 61.3
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 4.5e-59 233.0 149 77.2
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 2.7e-56 223.8 246 55.7
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 2.7e-56 223.8 246 55.7
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 2.7e-56 223.8 246 55.7
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 3.9e-55 219.9 176 68.8
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 5.1e-55 219.5 162 65.4
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 3.3e-54 216.9 249 57.0
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 2.6e-46 190.7 129 72.1
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 8.2e-45 185.7 120 75.0
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 2.0e-43 181.0 155 69.7
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 6.5e-42 176.0 158 66.5
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 2.0e-35 154.5 117 67.5
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 7.7e-35 152.5 144 54.9
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 1.1e-33 148.7 181 54.1
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 1.6e-27 128.3 124 58.9
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 2.7e-27 127.5 96 71.9
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 5.9e-27 126.3 74 77.0
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 1.0e-26 125.6 94 72.3
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 1.6e-24 118.2 78 71.8
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 5.7e-22 109.8 86 65.1
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 2.2e-21 107.8 181 42.0
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 1.3e-18 98.6 62 77.4
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 7.3e-17 92.8 160 36.9
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 1.5e-14 85.1 57 71.9
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 1.5e-09 68.6 73 47.9
BolC8t49834H Brassica oleracea HOM05D005057 ORTHO05D019871 1.2e-06 58.9 132 33.3
RcHm_v2.0_Chr5g0010491 Rosa chinensis HOM05D005057 ORTHO05D006570 5.8e-06 56.6 144 31.2


User provided reference genes

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