Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 8.0e-149 530.4 270 100.0
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 5.4e-145 517.7 270 97.0
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 1.1e-142 510.0 270 95.6
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 9.9e-131 470.3 270 87.8
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 1.7e-130 469.5 270 87.8
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 1.6e-128 463.0 270 86.7
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 7.8e-128 460.7 270 85.2
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 6.2e-125 451.1 270 83.3
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 2.4e-124 449.1 254 87.4
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 3.2e-121 438.7 250 86.4
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 1.8e-100 369.8 267 69.7
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 1.9e-97 359.8 266 66.9
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 4.2e-97 358.6 268 66.8
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 9.3e-97 357.5 267 68.5
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.6e-96 356.7 206 85.4
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 2.1e-96 356.3 270 66.3
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 4.6e-96 355.1 266 66.9
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 8.7e-95 350.9 267 67.4
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 1.1e-94 350.5 267 66.7
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 2.5e-94 349.4 266 66.2
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 7.4e-94 347.8 267 65.9
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 1.6e-93 346.7 267 65.2
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 2.8e-93 345.9 267 65.5
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 2.8e-93 345.9 266 65.0
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 4.8e-93 345.1 267 67.0
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 4.8e-93 345.1 267 67.0
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 4.8e-93 345.1 241 71.8
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 4.8e-93 345.1 267 66.3
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 8.2e-93 344.4 236 73.7
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 1.1e-92 344.0 240 70.0
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 1.4e-92 343.6 238 71.8
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 1.4e-92 343.6 269 65.1
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 1.8e-92 343.2 264 66.3
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.4e-92 342.8 265 64.5
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 2.4e-92 342.8 240 69.6
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 2.4e-92 342.8 270 66.3
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 5.3e-92 341.7 269 65.8
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 5.3e-92 341.7 266 63.5
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 2.0e-91 339.7 232 70.7
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 2.6e-91 339.3 241 71.4
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 3.4e-91 339.0 203 80.3
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 7.6e-91 337.8 196 89.3
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 7.6e-91 337.8 247 67.6
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 7.6e-91 337.8 215 74.4
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 7.6e-91 337.8 272 63.2
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 7.6e-91 337.8 229 71.6
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 1.0e-90 337.4 268 64.6
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 1.7e-90 336.7 239 68.2
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 2.2e-90 336.3 265 62.6
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 2.2e-90 336.3 265 63.4
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 3.8e-90 335.5 231 71.0
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 3.8e-90 335.5 267 65.5
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 5.0e-90 335.1 271 63.5
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 6.5e-90 334.7 215 74.0
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 8.4e-90 334.3 239 67.8
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 8.4e-90 334.3 228 72.4
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 1.1e-89 334.0 239 68.2
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 1.4e-89 333.6 255 65.5
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 1.9e-89 333.2 267 62.9
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 1.9e-89 333.2 247 67.6
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 2.5e-89 332.8 268 63.4
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 3.2e-89 332.4 234 68.4
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 3.2e-89 332.4 243 69.5
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 3.2e-89 332.4 243 69.5
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 3.2e-89 332.4 204 78.9
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 4.2e-89 332.0 206 76.2
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 4.2e-89 332.0 249 65.9
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 4.2e-89 332.0 227 70.9
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 4.2e-89 332.0 231 70.1
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.6e-88 330.1 210 76.2
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 2.1e-88 329.7 245 68.2
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 2.1e-88 329.7 229 70.3
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 3.5e-88 328.9 204 76.5
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 4.6e-88 328.6 232 69.8
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 6.1e-88 328.2 239 67.4
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 7.9e-88 327.8 239 66.9
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.3e-87 327.0 212 73.1
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 1.8e-87 326.6 239 66.9
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 2.3e-87 326.2 204 75.0
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 6.7e-87 324.7 241 65.6
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 8.7e-87 324.3 234 67.9
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 8.7e-87 324.3 241 64.7
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.1e-86 323.9 239 66.5
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.5e-86 323.6 226 67.7
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 1.5e-86 323.6 223 70.9
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 2.5e-86 322.8 268 61.2
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 1.3e-85 320.5 243 63.8
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 1.4e-84 317.0 233 67.0
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.8e-84 316.6 204 73.5
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 2.4e-84 316.2 263 59.3
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 3.1e-84 315.8 268 61.6
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 5.3e-84 315.1 244 62.7
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 6.9e-84 314.7 244 62.7
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 6.9e-84 314.7 243 65.0
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 9.0e-84 314.3 242 64.0
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 1.5e-83 313.5 241 64.7
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 1.5e-83 313.5 259 59.5
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 2.0e-83 313.2 268 61.2
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 4.5e-83 312.0 240 63.8
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 1.7e-82 310.1 246 63.4
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 8.5e-82 307.8 234 65.8
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 2.1e-80 303.1 232 66.8
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.7e-80 302.8 232 66.8
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 1.8e-79 300.1 245 62.9
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 2.5e-78 296.2 193 73.1
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.3e-77 293.9 241 61.4
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 2.2e-77 293.1 226 63.3
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 4.8e-77 292.0 202 69.3
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 2.6e-75 286.2 207 66.7
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 2.6e-75 286.2 206 66.5
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 8.5e-74 281.2 251 57.4
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 9.4e-73 277.7 249 59.0
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 2.7e-72 276.2 256 57.0
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 1.8e-71 273.5 216 60.2
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 2.6e-67 259.6 213 59.6
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 1.4e-63 247.3 215 61.4
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 4.8e-61 238.8 179 67.6
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 2.0e-59 233.4 229 53.3
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 7.7e-59 231.5 232 50.4
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 3.6e-56 222.6 205 51.2
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 3.0e-55 219.5 209 53.1
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 4.8e-53 212.2 209 52.2
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 2.9e-50 203.0 227 43.2
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.5e-49 200.7 205 53.7
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 4.2e-49 199.1 119 75.6
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 1.0e-47 194.5 194 56.2
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 8.8e-47 191.4 241 39.0
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.8e-44 183.7 109 79.8
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 9.8e-38 161.4 212 40.1
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 2.1e-32 143.7 102 69.6
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.8e-31 140.6 130 57.7
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 1.5e-30 137.5 132 58.3
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 1.1e-25 121.3 88 70.5
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 3.6e-24 116.3 104 55.8
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 3.4e-22 109.8 154 38.3
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 7.3e-17 92.0 62 72.6
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 4.1e-12 76.3 99 44.4
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 3.0e-10 70.1 44 75.0
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 5.1e-10 69.3 301 29.2
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 4.3e-09 66.2 60 60.0
SGA_v2.0_scaffold250G44986 Striga asiatica HOM05D005616 ORTHO05D403636 5.8e-06 55.8 33 69.7


User provided reference genes

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