Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 2.5e-143 512.7 395 100.0
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 3.4e-140 502.3 395 98.2
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 1.1e-127 460.7 379 95.5
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 7.7e-116 421.4 394 88.8
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.7e-115 420.2 396 86.9
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 4.4e-87 325.9 385 73.8
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 5.7e-87 325.5 416 71.6
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 6.3e-86 322.0 401 72.1
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.4e-85 320.9 423 68.3
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 2.7e-84 316.6 382 73.8
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 1.3e-83 314.3 378 69.3
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 6.6e-83 312.0 431 66.1
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 4.3e-82 309.3 382 73.3
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 4.3e-82 309.3 386 73.3
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 2.1e-81 307.0 385 71.4
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 4.7e-81 305.8 386 72.3
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 6.1e-81 305.4 323 81.1
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 8.0e-81 305.1 382 70.9
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 1.2e-79 301.2 377 70.0
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 4.4e-79 299.3 386 70.5
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 1.7e-78 297.4 396 64.4
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 3.7e-78 296.2 381 71.9
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 4.1e-77 292.7 320 74.7
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 4.1e-77 292.7 385 68.1
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 4.1e-77 292.7 382 68.1
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 5.4e-77 292.4 387 72.1
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 5.4e-77 292.4 393 65.1
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 1.6e-76 290.8 319 75.5
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 1.6e-76 290.8 391 71.6
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 2.0e-76 290.4 383 70.5
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 2.7e-76 290.0 391 66.8
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 3.5e-76 289.7 385 67.5
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 3.5e-76 289.7 389 66.6
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 6.0e-76 288.9 384 67.7
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 1.0e-75 288.1 378 71.4
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.0e-75 288.1 378 71.4
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.3e-75 287.7 394 70.3
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.5e-74 283.5 379 71.2
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 3.3e-74 283.1 379 68.6
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 5.6e-74 282.3 379 71.0
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 7.3e-74 282.0 386 69.2
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 2.8e-73 280.0 382 69.6
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 4.0e-72 276.2 382 70.4
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 8.9e-72 275.0 388 67.5
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 1.5e-71 274.2 374 70.9
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 1.5e-71 274.2 406 63.3
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 1.3e-70 271.2 388 67.0
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 3.7e-70 269.6 319 73.7
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 8.3e-70 268.5 378 64.0
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 1.1e-69 268.1 389 67.4
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 1.4e-69 267.7 378 68.0
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 1.4e-69 267.7 387 67.2
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 2.4e-69 266.9 388 67.0
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 4.1e-69 266.2 382 64.7
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 4.1e-69 266.2 403 61.0
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 7.0e-69 265.4 382 67.5
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 4.6e-68 262.7 383 64.5
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 6.0e-68 262.3 351 68.1
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 1.7e-67 260.8 385 66.2
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 2.3e-67 260.4 388 66.8
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 8.6e-67 258.5 405 65.9
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 3.3e-66 256.5 384 64.1
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 1.2e-65 254.6 383 66.6
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 1.6e-65 254.2 382 64.7
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 2.1e-65 253.8 364 65.7
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 2.1e-65 253.8 390 65.9
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 2.8e-65 253.4 385 62.9
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 2.8e-65 253.4 387 67.7
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 8.1e-65 251.9 384 66.1
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 1.1e-64 251.5 382 65.7
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.4e-64 251.1 395 63.8
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 1.4e-64 251.1 379 68.6
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 2.3e-64 250.4 389 68.4
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.1e-64 250.0 379 68.3
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 4.0e-64 249.6 383 62.4
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 6.8e-64 248.8 391 63.4
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 8.9e-64 248.4 389 63.2
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 8.9e-64 248.4 380 69.2
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 1.5e-63 247.7 399 60.4
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 2.0e-63 247.3 395 63.8
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 2.6e-63 246.9 389 63.5
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 4.4e-63 246.1 386 64.5
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 4.4e-63 246.1 392 63.3
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 5.8e-63 245.7 326 68.1
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 5.8e-63 245.7 387 65.4
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 9.9e-63 245.0 382 67.8
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.7e-62 244.2 386 63.0
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 3.7e-62 243.0 380 66.3
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 4.9e-62 242.7 387 67.4
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 6.4e-62 242.3 384 68.0
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 1.1e-61 241.5 382 63.6
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 4.1e-61 239.6 390 62.3
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 7.1e-61 238.8 319 69.0
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 9.2e-61 238.4 384 65.1
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 6.0e-60 235.7 322 67.4
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 1.3e-59 234.6 437 60.9
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 4.3e-58 229.6 319 67.7
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 5.6e-58 229.2 320 67.5
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 1.6e-57 227.6 384 61.7
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 8.1e-57 225.3 389 62.2
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 8.1e-57 225.3 389 61.7
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 1.1e-56 224.9 394 62.9
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.1e-56 224.9 318 67.9
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 5.2e-56 222.6 394 62.4
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 5.2e-56 222.6 378 59.3
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 6.4e-54 215.7 411 59.4
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 1.4e-53 214.5 187 57.2
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 6.0e-52 209.1 387 55.3
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 1.7e-51 207.6 394 56.9
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 1.7e-51 207.6 385 59.0
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 1.7e-51 207.6 386 57.0
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 6.6e-51 205.7 382 65.7
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 6.6e-51 205.7 385 57.9
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 1.9e-50 204.1 263 76.0
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 7.3e-50 202.2 381 64.0
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 7.3e-50 202.2 389 63.2
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 9.6e-50 201.8 389 63.2
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 1.2e-49 201.4 387 58.1
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 1.2e-49 201.4 387 58.1
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 1.2e-49 201.4 387 58.1
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 2.1e-49 200.7 382 62.8
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 1.1e-48 198.4 388 58.0
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 1.1e-48 198.4 388 58.0
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 1.1e-48 198.4 389 61.7
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 1.8e-48 197.6 341 60.1
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 4.4e-47 193.0 385 61.8
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 2.2e-46 190.7 378 63.5
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 4.2e-45 186.4 383 38.4
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 2.7e-44 183.7 395 53.2
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 2.0e-39 167.5 129 64.3
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 2.6e-39 167.2 400 58.2
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 6.4e-38 162.5 403 57.8
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 6.4e-38 162.5 166 51.2
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 2.4e-37 160.6 338 52.1
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 7.1e-37 159.1 385 40.8
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 1.0e-35 155.2 410 50.2
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 3.9e-35 153.3 278 73.4
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 6.7e-35 152.5 376 59.0
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 5.6e-34 149.4 411 56.0
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 1.3e-33 148.3 411 55.7
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.3e-33 148.3 411 55.7
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 1.6e-33 147.9 258 70.2
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 4.8e-33 146.4 195 43.1
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 6.2e-33 146.0 403 45.7
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 1.4e-32 144.8 284 70.1
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 5.3e-32 142.9 188 42.6
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 3.8e-30 136.7 325 56.0
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 3.8e-30 136.7 330 56.1
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 8.4e-30 135.6 405 51.9
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 2.5e-29 134.0 396 51.8
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 7.1e-29 132.5 371 57.1
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 9.3e-29 132.1 399 50.4
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 6.0e-28 129.4 334 52.7
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 3.0e-27 127.1 412 52.9
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.1e-25 120.9 89 75.3
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 8.4e-22 109.0 242 76.0
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 7.1e-21 105.9 100 56.0
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 7.1e-21 105.9 405 44.0
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 3.3e-18 97.1 120 59.2
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 9.7e-18 95.5 190 34.7
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 1.6e-17 94.7 105 52.4
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 5.3e-16 89.7 120 41.7
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 4.5e-15 86.7 247 59.5
Pp3c14_13680 Physcomitrium patens HOM05D004193 ORTHO05D004862 2.2e-14 84.3 162 30.9
ATR0705G001 Amborella trichopoda HOM05D004193 ORTHO05D004862 6.7e-11 72.8 110 60.0
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 2.0e-10 71.2 160 36.9
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 2.8e-09 67.4 84 47.6
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 4.5e-07 60.1 47 55.3
AL2G35820 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 5.0e-06 56.6 45 53.3
AL6G39660 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 5.0e-06 56.6 45 53.3


User provided reference genes

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