Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 1.8e-38 162.2 84 100.0
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 5.4e-35 150.6 84 90.5
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 1.2e-31 139.4 85 85.9
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 4.7e-23 110.9 81 72.8
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 4.4e-21 104.4 86 61.6
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 1.7e-20 102.4 91 60.4
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 1.9e-19 99.0 94 61.7
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 4.1e-19 97.8 85 61.2
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 5.4e-19 97.4 88 59.1
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 5.4e-19 97.4 85 63.5
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 5.4e-19 97.4 86 61.6
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 7.1e-19 97.1 92 56.5
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 1.2e-18 96.3 85 61.2
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 1.6e-18 95.9 88 58.0
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.6e-18 95.9 88 60.2
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 1.6e-18 95.9 85 57.6
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 2.7e-18 95.1 85 62.4
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 2.7e-18 95.1 90 61.1
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 3.5e-18 94.7 89 62.9
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 4.6e-18 94.4 82 64.6
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 7.8e-18 93.6 83 63.9
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 1.0e-17 93.2 79 62.0
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.0e-17 93.2 84 58.3
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 1.3e-17 92.8 84 59.5
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.3e-17 92.8 87 57.5
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.7e-17 92.4 85 62.4
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 2.3e-17 92.0 85 58.8
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 2.3e-17 92.0 89 56.2
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.0e-17 91.7 91 54.9
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 3.0e-17 91.7 91 54.9
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 3.0e-17 91.7 86 62.8
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.0e-17 91.7 85 58.8
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.9e-17 91.3 91 54.9
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.9e-17 91.3 91 53.8
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 5.1e-17 90.9 87 58.6
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 5.1e-17 90.9 87 58.6
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 5.1e-17 90.9 97 51.5
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 8.6e-17 90.1 85 61.2
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 8.6e-17 90.1 85 61.2
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 8.6e-17 90.1 83 61.4
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 1.5e-16 89.4 91 53.8
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.5e-16 89.4 95 52.6
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 1.9e-16 89.0 86 53.5
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 1.9e-16 89.0 53 81.1
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 3.3e-16 88.2 86 55.8
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.3e-16 88.2 85 54.1
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 5.6e-16 87.4 91 52.7
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 7.3e-16 87.0 88 55.7
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 9.5e-16 86.7 88 56.8
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 9.5e-16 86.7 88 52.3
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 1.2e-15 86.3 87 52.9
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 1.2e-15 86.3 85 57.6
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 3.6e-15 84.7 87 57.5
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 6.2e-15 84.0 51 76.5
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 6.2e-15 84.0 95 49.5
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 1.1e-14 83.2 90 58.9
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 1.4e-14 82.8 84 56.0
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 1.4e-14 82.8 92 50.0
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 1.8e-14 82.4 93 57.0
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 1.8e-14 82.4 94 50.0
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 1.8e-14 82.4 92 48.9
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 2.4e-14 82.0 87 54.0
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 3.1e-14 81.6 92 48.9
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 4.0e-14 81.3 90 58.9
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 5.2e-14 80.9 86 51.2
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 5.2e-14 80.9 86 52.3
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 5.2e-14 80.9 79 60.8
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 5.2e-14 80.9 90 54.4
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 6.8e-14 80.5 88 59.1
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 6.8e-14 80.5 90 51.1
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 6.8e-14 80.5 81 55.6
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 1.2e-13 79.7 98 49.0
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 1.2e-13 79.7 93 49.5
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 1.5e-13 79.3 93 50.5
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 2.0e-13 79.0 98 49.0
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.6e-13 78.6 90 56.7
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 2.6e-13 78.6 92 46.7
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 2.6e-13 78.6 90 52.2
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 3.4e-13 78.2 96 52.1
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 4.4e-13 77.8 87 54.0
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 4.4e-13 77.8 71 64.8
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 4.4e-13 77.8 89 49.4
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 5.8e-13 77.4 98 48.0
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 7.6e-13 77.0 80 58.8
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 9.9e-13 76.6 98 46.9
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 9.9e-13 76.6 98 46.9
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 1.3e-12 76.3 98 46.9
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 1.3e-12 76.3 98 46.9
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 1.3e-12 76.3 87 50.6
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 1.7e-12 75.9 92 50.0
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 2.2e-12 75.5 98 46.9
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 6.4e-12 73.9 98 45.9
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 6.4e-12 73.9 98 45.9
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 1.1e-11 73.2 85 50.6
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 1.1e-11 73.2 98 45.9
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 1.1e-11 73.2 98 45.9
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 1.1e-11 73.2 98 45.9
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 1.4e-11 72.8 95 44.2
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 2.4e-11 72.0 54 63.0
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 3.2e-11 71.6 83 49.4
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 4.1e-11 71.2 73 53.4
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 4.1e-11 71.2 80 51.2
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 5.4e-11 70.9 98 43.9
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 5.4e-11 70.9 72 54.2
Aa31LG6G6240 Aethionema arabicum HOM05D005059 ORTHO05D004248 7.1e-11 70.5 97 46.4
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 1.2e-10 69.7 99 44.4
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 1.6e-10 69.3 63 60.3
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 2.1e-10 68.9 99 45.5
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 2.1e-10 68.9 99 45.5
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 2.1e-10 68.9 99 45.5
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 2.1e-10 68.9 85 45.9
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 6.0e-10 67.4 66 54.5
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 6.0e-10 67.4 55 61.8
Thhalv10009335m.g Eutrema salsugineum HOM05D009829 ORTHO05D012418 7.8e-10 67.0 88 44.3
EL10Ac8g20558 Beta vulgaris HOM05D005059 ORTHO05D004248 1.0e-09 66.6 68 54.4
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 1.3e-09 66.2 85 51.8
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 1.7e-09 65.9 98 42.9
BcaC07g38826 Brassica carinata HOM05D009829 ORTHO05D012418 1.7e-09 65.9 84 44.0
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 1.7e-09 65.9 98 42.9
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 1.7e-09 65.9 98 42.9
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 1.7e-09 65.9 85 47.1
C08p17660 Brassica napus HOM05D009829 ORTHO05D012418 5.1e-09 64.3 84 42.9
BolC8t49391H Brassica oleracea HOM05D009829 ORTHO05D012418 5.1e-09 64.3 84 42.9
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 5.1e-09 64.3 82 43.9
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 5.1e-09 64.3 71 50.7
Sp1g15090 Schrenkiella parvula HOM05D009829 ORTHO05D012418 5.1e-09 64.3 88 45.5
Thecc.07G128100 Theobroma cacao HOM05D008890 ORTHO05D004248 5.1e-09 64.3 84 45.2
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 6.6e-09 63.9 98 41.8
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 6.6e-09 63.9 98 41.8
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 6.6e-09 63.9 81 45.7
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.1e-08 63.2 83 41.0
Actinidia18806 Actinidia chinensis HOM05D005059 ORTHO05D004248 1.5e-08 62.8 70 50.0
AT1G16950 Arabidopsis thaliana HOM05D009829 ORTHO05D012418 1.9e-08 62.4 87 42.5
A08p31200 Brassica napus HOM05D009829 ORTHO05D012418 1.9e-08 62.4 84 42.9
Carub.0001s1668 Capsella rubella HOM05D009829 ORTHO05D012418 1.9e-08 62.4 87 43.7
AL1G29130 Arabidopsis lyrata HOM05D009829 ORTHO05D012418 2.5e-08 62.0 87 41.4
BcaB03g13023 Brassica carinata HOM05D009829 ORTHO05D012418 2.5e-08 62.0 84 42.9
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 2.5e-08 62.0 81 46.9
Thecc.07G128200 Theobroma cacao HOM05D008890 ORTHO05D004248 2.5e-08 62.0 74 47.3
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 3.3e-08 61.6 82 47.6
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 3.3e-08 61.6 90 42.2
TPR.G4530 Trifolium pratense HOM05D005059 ORTHO05D004248 3.3e-08 61.6 83 42.2
COL.COLO4_17491 Corchorus olitorius HOM05D008890 ORTHO05D004248 4.3e-08 61.2 73 43.8
CARHR017460 Cardamine hirsuta HOM05D009829 ORTHO05D012418 5.6e-08 60.8 87 41.4
Duzib213G0742 Durio zibethinus HOM05D008890 ORTHO05D004248 7.3e-08 60.5 90 42.2
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 7.3e-08 60.5 76 46.1
BraA08t35043Z Brassica rapa HOM05D009829 ORTHO05D012418 9.6e-08 60.1 84 41.7
Gohir.A01G050000 Gossypium hirsutum HOM05D008890 ORTHO05D004248 1.2e-07 59.7 86 43.0
Thecc.07G128300 Theobroma cacao HOM05D008890 ORTHO05D004248 1.2e-07 59.7 72 41.7
CSS0027903 Camellia sinensis var. sinensis HOM05D008890 ORTHO05D004248 1.6e-07 59.3 87 49.4
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.1e-07 58.9 74 40.5
Duzib213G0473 Durio zibethinus HOM05D008890 ORTHO05D004248 2.8e-07 58.5 90 43.3
Aa31LG7G1380 Aethionema arabicum HOM05D009829 ORTHO05D012418 3.6e-07 58.2 57 52.6
PSO339G2616 Papaver somniferum HOM05D005059 ORTHO05D004248 3.6e-07 58.2 84 48.8
BcaC07g41449 Brassica carinata HOM05D009829 ORTHO05D012418 8.1e-07 57.0 88 43.2
A06p12860 Brassica napus HOM05D009829 ORTHO05D012418 8.1e-07 57.0 88 39.8
C05p15270 Brassica napus HOM05D009829 ORTHO05D012418 8.1e-07 57.0 88 39.8
BraA06t24446Z Brassica rapa HOM05D009829 ORTHO05D012418 8.1e-07 57.0 88 39.8
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 8.1e-07 57.0 66 50.0
BcaC05g25551 Brassica carinata HOM05D009829 ORTHO05D012418 1.4e-06 56.2 88 40.9
C08p44170 Brassica napus HOM05D009829 ORTHO05D000015 1.4e-06 56.2 79 46.8
BolC8t51964H Brassica oleracea HOM05D009829 ORTHO05D000015 1.4e-06 56.2 79 46.8
Gohir.A01G049400 Gossypium hirsutum HOM05D008890 ORTHO05D004248 1.4e-06 56.2 90 43.3
A09p60670 Brassica napus HOM05D009829 ORTHO05D000015 1.8e-06 55.8 79 45.6
BolC5t30233H Brassica oleracea HOM05D009829 ORTHO05D012418 1.8e-06 55.8 87 43.7
BraA09t41438Z Brassica rapa HOM05D009829 ORTHO05D000015 1.8e-06 55.8 79 45.6
Lsat_1_v5_gn_7_102341 Lactuca sativa HOM05D005059 ORTHO05D004248 1.8e-06 55.8 85 43.5
MELO3C035718.2 Cucumis melo HOM05D005059 ORTHO05D004248 2.4e-06 55.5 97 38.1
BcaB02g06660 Brassica carinata HOM05D009829 ORTHO05D012418 3.1e-06 55.1 88 38.6
BcaB02g06661 Brassica carinata HOM05D009829 ORTHO05D012418 3.1e-06 55.1 88 38.6
Gohir.D01G040100 Gossypium hirsutum HOM05D008890 ORTHO05D004248 4.0e-06 54.7 90 42.2
Gorai.002G049700 Gossypium raimondii HOM05D008890 ORTHO05D004248 4.0e-06 54.7 90 42.2
Gohir.A01G049800 Gossypium hirsutum HOM05D008890 ORTHO05D004248 5.2e-06 54.3 86 40.7
Gohir.D01G040000 Gossypium hirsutum HOM05D008890 ORTHO05D004248 5.2e-06 54.3 90 43.3
Gohir.D01G040250 Gossypium hirsutum HOM05D008890 ORTHO05D004248 5.2e-06 54.3 86 40.7
Gorai.002G049600 Gossypium raimondii HOM05D008890 ORTHO05D004248 5.2e-06 54.3 90 43.3
Gohir.D01G040200 Gossypium hirsutum HOM05D008890 ORTHO05D004248 6.9e-06 53.9 84 38.1
Gorai.002G049900 Gossypium raimondii HOM05D008890 ORTHO05D004248 6.9e-06 53.9 75 45.3
Lsat_1_v5_gn_7_102321 Lactuca sativa HOM05D005059 ORTHO05D004248 6.9e-06 53.9 84 41.7
Gohir.A01G049200 Gossypium hirsutum HOM05D008890 ORTHO05D004248 9.0e-06 53.5 90 42.2
Lsat_1_v5_gn_7_102441 Lactuca sativa HOM05D005059 ORTHO05D004248 9.0e-06 53.5 84 41.7
unitig_744.g24543 Utricularia gibba HOM05D005059 ORTHO05D004248 9.0e-06 53.5 50 54.0


User provided reference genes

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