Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g020930 Solanum pennellii HOM05D007852 ORTHO05D009916 8.4e-48 193.4 98 100.0
Solyc02g071940.1 Solanum lycopersicum HOM05D007852 ORTHO05D009916 2.1e-46 188.7 98 98.0
PGSC0003DMG400028458 Solanum tuberosum HOM05D007852 ORTHO05D009916 1.4e-37 159.5 98 84.7
Nitab4.5_0008572g0040 Nicotiana tabacum HOM05D007852 ORTHO05D009916 1.1e-23 113.2 91 64.8
Hma1.2p1_1749F.1_g300710 Hydrangea macrophylla HOM05D007852 ORTHO05D009916 1.0e-13 80.1 68 55.9
FAN16G0821 Fragaria x ananassa HOM05D007852 ORTHO05D009916 6.8e-13 77.4 54 59.3
MSTRG.16177 Avicennia marina HOM05D007852 ORTHO05D009916 2.0e-12 75.9 75 48.0
Ciclev10018381m.g Citrus clementina HOM05D007852 ORTHO05D009916 2.0e-12 75.9 86 46.5
Gohir.D06G206100 Gossypium hirsutum HOM05D007852 ORTHO05D009916 2.6e-12 75.5 59 54.2
Gorai.010G240500 Gossypium raimondii HOM05D007852 ORTHO05D009916 2.6e-12 75.5 59 54.2
Migut.M00995 Erythranthe guttata HOM05D007852 ORTHO05D009916 4.4e-12 74.7 60 56.7
TWI09G0702 Tripterygium wilfordii HOM05D007852 ORTHO05D009916 7.5e-12 73.9 54 57.4
Gohir.A06G198800 Gossypium hirsutum HOM05D007852 ORTHO05D009916 9.8e-12 73.6 59 54.2
FAN21G2050 Fragaria x ananassa HOM05D007852 ORTHO05D009916 1.7e-11 72.8 95 43.2
COL.COLO4_31211 Corchorus olitorius HOM05D007852 ORTHO05D009916 2.2e-11 72.4 92 45.7
SGA_v2.0_scaffold1G00101 Striga asiatica HOM05D007852 ORTHO05D009916 2.2e-11 72.4 59 54.2
TAR626G0530 Trochodendron aralioides HOM05D007852 ORTHO05D009916 2.2e-11 72.4 63 50.8
Oeu001067.1 Olea europaea HOM05D007852 ORTHO05D009916 2.8e-11 72.0 73 46.6
RcHm_v2.0_Chr5g0011991 Rosa chinensis HOM05D007852 ORTHO05D009916 2.8e-11 72.0 85 49.4
Actinidia39528 Actinidia chinensis HOM05D007852 ORTHO05D009916 4.8e-11 71.2 53 64.2
Ciclev10006937m.g Citrus clementina HOM05D007852 ORTHO05D009916 4.8e-11 71.2 54 55.6
Glyma.13G225200 Glycine max HOM05D007852 ORTHO05D009916 4.8e-11 71.2 56 53.6
MELO3C017616.2 Cucumis melo HOM05D007852 ORTHO05D009916 6.3e-11 70.9 59 49.2
Prupe.4G068400 Prunus persica HOM05D007852 ORTHO05D009916 6.3e-11 70.9 65 49.2
MELO3C002684.2 Cucumis melo HOM05D007852 ORTHO05D009916 1.1e-10 70.1 59 49.2
Medtr8g087660 Medicago truncatula HOM05D007852 ORTHO05D009916 1.8e-10 69.3 66 51.5
Potri.004G062700 Populus trichocarpa HOM05D007852 ORTHO05D009916 1.8e-10 69.3 96 42.7
Sed0006029 Sechium edule HOM05D007852 ORTHO05D009916 1.8e-10 69.3 57 49.1
ClCG03G007370 Citrullus lanatus HOM05D007852 ORTHO05D009916 3.1e-10 68.6 57 49.1
Lsat_1_v5_gn_4_49360 Lactuca sativa HOM05D007852 ORTHO05D009916 3.1e-10 68.6 45 64.4
VMungo0540G1707 Vigna mungo HOM05D007852 ORTHO05D009916 5.4e-10 67.8 65 49.2
Thecc.06G163700 Theobroma cacao HOM05D007852 ORTHO05D009916 9.1e-10 67.0 55 49.1
DCAR_003974 Daucus carota HOM05D007852 ORTHO05D009916 1.2e-09 66.6 91 45.1
Glyma.08G120000 Glycine max HOM05D007852 ORTHO05D009916 1.2e-09 66.6 87 44.8
QL05p050225 Quercus lobata HOM05D007852 ORTHO05D009916 1.2e-09 66.6 82 45.1
Dinv12735 Davidia involucrata HOM05D007852 ORTHO05D009916 1.6e-09 66.2 86 46.5
Psat7g067600 Pisum sativum HOM05D007852 ORTHO05D009916 2.0e-09 65.9 62 53.2
CARHR029160 Cardamine hirsuta HOM05D007852 ORTHO05D009916 2.7e-09 65.5 56 50.0
AUR62041804 Chenopodium quinoa HOM05D007852 ORTHO05D009916 2.7e-09 65.5 61 50.8
Ciclev10002903m.g Citrus clementina HOM05D007852 ORTHO05D009916 5.9e-09 64.3 96 37.5
AL1G43620 Arabidopsis lyrata HOM05D007852 ORTHO05D009916 1.3e-08 63.2 96 39.6
BcaB03g12179 Brassica carinata HOM05D007852 ORTHO05D009916 1.7e-08 62.8 52 51.9
AUR62039495 Chenopodium quinoa HOM05D007852 ORTHO05D009916 1.7e-08 62.8 91 40.7
Sp1g25680 Schrenkiella parvula HOM05D007852 ORTHO05D009916 1.7e-08 62.8 50 54.0
BcaC01g00138 Brassica carinata HOM05D007852 ORTHO05D009916 2.2e-08 62.4 52 51.9
Lalb_Chr15g0086451 Lupinus albus HOM05D007852 ORTHO05D009916 2.9e-08 62.0 48 56.2
Phvul.002G242100 Phaseolus vulgaris HOM05D007852 ORTHO05D009916 2.9e-08 62.0 90 43.3
A08p24840 Brassica napus HOM05D007852 ORTHO05D009916 3.8e-08 61.6 96 42.7
BraA08t34439Z Brassica rapa HOM05D007852 ORTHO05D009916 3.8e-08 61.6 96 42.7
Carub.0001s2803 Capsella rubella HOM05D007852 ORTHO05D009916 3.8e-08 61.6 92 40.2
BolC3t19875H Brassica oleracea HOM05D007852 ORTHO05D009916 5.0e-08 61.2 55 49.1
arahy.Tifrunner.gnm1.ann1.4JXB6U Arachis hypogaea HOM05D007852 ORTHO05D009916 6.5e-08 60.8 87 40.2
C03p76190 Brassica napus HOM05D007852 ORTHO05D009916 6.5e-08 60.8 55 49.1
Duzib235G0245 Durio zibethinus HOM05D007852 ORTHO05D009916 6.5e-08 60.8 56 46.4
Thhalv10009162m.g Eutrema salsugineum HOM05D007852 ORTHO05D009916 6.5e-08 60.8 54 50.0
Lj6g0024251 Lotus japonicus HOM05D007852 ORTHO05D009916 8.5e-08 60.5 67 41.8
Lalb_Chr18g0054901 Lupinus albus HOM05D007852 ORTHO05D009916 8.5e-08 60.5 65 47.7
A07p10220 Brassica napus HOM05D007852 ORTHO05D009916 1.5e-07 59.7 59 50.8
Nn3g21053 Nelumbo nucifera HOM05D007852 ORTHO05D009916 1.5e-07 59.7 93 36.6
GSVIVG01021272001 Vitis vinifera HOM05D007852 ORTHO05D009916 1.5e-07 59.7 82 37.8
Atru.chr10.1525 Acer truncatum HOM05D007852 ORTHO05D009916 1.9e-07 59.3 90 43.3
ATR0820G245 Amborella trichopoda HOM05D007852 ORTHO05D009916 1.9e-07 59.3 51 47.1
BcaC06g35465 Brassica carinata HOM05D007852 ORTHO05D009916 1.9e-07 59.3 102 38.2
BraA07t28818Z Brassica rapa HOM05D007852 ORTHO05D009916 2.5e-07 58.9 65 46.2
Pp3c20_15620 Physcomitrium patens HOM05D007852 ORTHO05D009916 2.5e-07 58.9 56 48.2
Sc05g0006790 Simmondsia chinensis HOM05D007852 ORTHO05D009916 2.5e-07 58.9 45 53.3
CiPaw.09G136400 Carya illinoinensis HOM05D007852 ORTHO05D009916 4.2e-07 58.2 62 45.2
Hund21452 Selenicereus undatus HOM05D007852 ORTHO05D009916 5.5e-07 57.8 98 34.7
Mapoly0042s0091 Marchantia polymorpha HOM05D007852 ORTHO05D009916 9.4e-07 57.0 47 51.1
Phvul.006G171300 Phaseolus vulgaris HOM05D007852 ORTHO05D009916 9.4e-07 57.0 96 41.7
Glyma.05G162400 Glycine max HOM05D007852 ORTHO05D009916 1.6e-06 56.2 80 45.0
Zm00001eb094410 Zea mays HOM05D007852 ORTHO05D009916 2.7e-06 55.5 58 43.1
C07p15740 Brassica napus HOM05D007852 ORTHO05D009916 4.7e-06 54.7 98 37.8
BolC7t42066H Brassica oleracea HOM05D007852 ORTHO05D009916 4.7e-06 54.7 98 37.8
Sabra04G0041600 Salix brachista HOM05D007852 ORTHO05D009916 4.7e-06 54.7 95 37.9
BcaC05g26993 Brassica carinata HOM05D007852 ORTHO05D009916 6.1e-06 54.3 95 40.0
C05p28530 Brassica napus HOM05D007852 ORTHO05D009916 6.1e-06 54.3 95 40.0
BolC5t31577H Brassica oleracea HOM05D007852 ORTHO05D009916 6.1e-06 54.3 95 40.0
Manes.16G043700 Manihot esculenta HOM05D007852 ORTHO05D009916 8.0e-06 53.9 84 38.1


User provided reference genes

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