Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 9.1e-119 430.3 218 100.0
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 1.2e-115 419.9 218 98.2
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 1.3e-104 383.3 218 90.4
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 9.8e-97 357.1 218 83.5
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 6.4e-96 354.4 216 83.3
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 2.7e-94 349.0 219 81.7
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 4.0e-58 228.8 212 55.2
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 1.1e-55 220.7 193 57.0
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 1.1e-55 220.7 211 55.0
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 4.2e-55 218.8 196 57.1
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 2.7e-54 216.1 208 58.7
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 4.6e-54 215.3 205 53.7
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 1.0e-53 214.2 212 54.2
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 1.8e-53 213.4 216 55.6
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 3.0e-53 212.6 192 56.2
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 5.1e-53 211.8 208 54.3
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 8.7e-53 211.1 210 49.5
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 1.1e-52 210.7 207 52.7
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 1.5e-52 210.3 208 53.8
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 5.6e-52 208.4 208 51.9
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 5.6e-52 208.4 208 49.5
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 9.6e-52 207.6 196 52.0
Ah.02g125570 Amaranthus hybridus HOM05D006968 ORTHO05D008748 6.2e-51 204.9 204 52.5
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 6.2e-51 204.9 204 50.0
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 8.1e-51 204.5 204 51.0
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 1.1e-50 204.1 186 53.2
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 3.1e-50 202.6 209 52.6
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 5.3e-50 201.8 216 45.8
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 9.0e-50 201.1 214 45.8
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 9.0e-50 201.1 213 48.4
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 1.2e-49 200.7 193 52.8
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 3.4e-49 199.1 213 48.8
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 3.4e-49 199.1 214 45.3
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 5.8e-49 198.4 214 44.9
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 2.2e-48 196.4 186 50.5
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 8.4e-48 194.5 192 50.5
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 1.4e-47 193.7 182 52.2
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 2.5e-47 193.0 204 47.1
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 2.5e-47 193.0 199 46.2
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 2.5e-47 193.0 212 45.8
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 2.5e-47 193.0 213 48.8
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 3.2e-47 192.6 199 49.7
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 4.2e-47 192.2 215 50.2
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 2.1e-46 189.9 208 47.6
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 3.5e-46 189.1 204 46.1
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 1.3e-45 187.2 216 46.3
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 1.3e-45 187.2 199 50.8
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 2.3e-45 186.4 195 51.8
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 6.7e-45 184.9 203 48.3
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 1.1e-44 184.1 172 48.8
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 1.5e-44 183.7 204 48.0
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 1.9e-44 183.3 195 49.7
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 4.3e-44 182.2 202 44.6
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 2.1e-43 179.9 195 48.7
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 2.1e-43 179.9 201 48.8
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 2.8e-43 179.5 209 46.9
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 1.4e-42 177.2 221 46.2
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 1.8e-42 176.8 195 47.7
AUR62027636 Chenopodium quinoa HOM05D006968 ORTHO05D008748 3.1e-42 176.0 205 44.9
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 4.1e-42 175.6 207 45.9
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 5.3e-42 175.3 201 47.8
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 1.2e-41 174.1 215 44.7
Aqoxy1G01892 Aquilegia oxysepala HOM05D006968 ORTHO05D008748 2.0e-41 173.3 204 46.1
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 1.9e-39 166.8 195 46.7
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 9.3e-39 164.5 197 45.7
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 2.1e-38 163.3 205 45.4
Migut.M00982 Erythranthe guttata HOM05D006968 ORTHO05D008748 2.1e-38 163.3 147 57.1
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 3.6e-38 162.5 201 45.3
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 4.6e-38 162.2 216 40.7
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 4.6e-38 162.2 212 44.3
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 6.1e-38 161.8 196 47.4
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 7.9e-38 161.4 193 47.7
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 7.9e-38 161.4 193 47.7
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 7.9e-38 161.4 197 44.7
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 1.0e-37 161.0 197 44.7
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 2.3e-37 159.8 197 46.7
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 6.7e-37 158.3 128 61.7
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 8.7e-37 157.9 186 47.8
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 1.5e-36 157.1 210 41.0
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 1.5e-36 157.1 207 45.4
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 2.8e-35 152.9 192 45.8
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 6.3e-35 151.8 212 41.5
FAN22G0056 Fragaria x ananassa HOM05D006968 ORTHO05D008748 2.0e-33 146.7 223 39.0
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 1.7e-32 143.7 217 37.8
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 1.7e-32 143.7 216 39.4
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 2.2e-32 143.3 178 43.3
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 1.1e-31 141.0 126 54.0
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 1.1e-31 141.0 178 42.7
SEGI_37019 Sequoiadendron giganteum HOM05D006968 ORTHO05D008748 2.5e-31 139.8 214 36.4
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 5.5e-31 138.7 223 35.9
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 5.5e-31 138.7 212 38.2
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 7.2e-31 138.3 291 29.9
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 9.4e-31 137.9 217 36.9
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 9.4e-31 137.9 217 36.9
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 2.1e-30 136.7 217 36.9
Actinidia39540 Actinidia chinensis HOM05D006968 ORTHO05D008748 1.0e-29 134.4 143 49.0
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 1.0e-29 134.4 222 34.2
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 1.4e-29 134.0 213 36.2
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 3.0e-29 132.9 222 33.8
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 3.9e-29 132.5 191 37.2
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 6.7e-29 131.7 213 35.2
HPP92_009092 Vanilla planifolia HOM05D006968 ORTHO05D008748 1.4e-26 124.0 196 40.3
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 3.4e-25 119.4 161 44.7
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 3.2e-23 112.8 105 50.5
Zm00001eb154290 Zea mays HOM05D006968 ORTHO05D008748 4.2e-23 112.5 207 35.7
Zm00001eb045900 Zea mays HOM05D006968 ORTHO05D008748 3.6e-22 109.4 207 34.8
Pp3c13_11400 Physcomitrium patens HOM05D006968 ORTHO05D008748 4.7e-22 109.0 164 37.2
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 1.8e-21 107.1 120 52.5
Lalb_Chr18g0055041 Lupinus albus HOM05D006968 ORTHO05D008748 2.0e-20 103.6 199 35.7
Os01g0727900 Oryza sativa ssp. japonica HOM05D006968 ORTHO05D008748 1.7e-19 100.5 192 34.9
ATR0737G097 Amborella trichopoda HOM05D006968 ORTHO05D008748 1.1e-18 97.8 152 38.8
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 2.4e-18 96.7 84 57.1
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 1.3e-16 90.9 85 50.6
ECA248G3047 Erigeron canadensis HOM05D006968 ORTHO05D008748 2.7e-14 83.2 129 37.2
SGA_v2.0_scaffold36G14429 Striga asiatica HOM05D003154 ORTHO05D003565 1.1e-10 71.2 71 57.7
SGA_v2.0_scaffold305G47958 Striga asiatica HOM05D000046 ORTHO05D405780 1.2e-09 67.8 56 64.3
TWI53G1777 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 2.9e-08 63.2 89 38.2
GSVIVG01021310001 Vitis vinifera HOM05D006968 ORTHO05D008748 5.0e-08 62.4 67 52.2


User provided reference genes

Program Settings