Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g019980 Solanum pennellii HOM05D008090 ORTHO05D010156 1.9e-119 432.6 227 100.0
Solyc02g070900.1 Solanum lycopersicum HOM05D008090 ORTHO05D010156 1.3e-112 409.8 227 91.6
PGSC0003DMG400008320 Solanum tuberosum HOM05D008090 ORTHO05D010156 6.2e-110 401.0 227 91.2
CAN.G257.11 Capsicum annuum HOM05D008090 ORTHO05D010156 6.0e-89 331.3 228 72.4
Nitab4.5_0029367g0010 Nicotiana tabacum HOM05D008090 ORTHO05D010156 1.4e-82 310.1 230 73.9
Peaxi162Scf00347g00042 Petunia axillaris HOM05D008090 ORTHO05D010156 5.0e-59 231.9 230 59.1
Nitab4.5_0006300g0040 Nicotiana tabacum HOM05D008090 ORTHO05D010156 1.4e-53 213.8 164 73.2
Dinv30710 Davidia involucrata HOM05D000133 ORTHO05D010156 4.4e-47 192.2 244 49.6
MSTRG.7470 Avicennia marina HOM05D008090 ORTHO05D010156 4.5e-44 182.2 240 47.5
Lj1P1184T52 Lonicera japonica HOM05D008090 ORTHO05D010156 3.8e-43 179.1 234 48.3
Cc09_g09530 Coffea canephora HOM05D008090 ORTHO05D010156 1.5e-42 177.2 233 47.6
Haze_05542 Corylus avellana HOM05D008090 ORTHO05D010156 2.5e-42 176.4 233 48.5
Cfa000975 Carpinus fangiana HOM05D008090 ORTHO05D010156 7.2e-42 174.9 237 48.5
Migut.M00932 Erythranthe guttata HOM05D008090 ORTHO05D010156 2.1e-41 173.3 247 46.2
Sopen02g020000 Solanum pennellii HOM05D008090 ORTHO05D010156 8.0e-41 171.4 156 60.3
Prupe.4G076400 Prunus persica HOM05D008090 ORTHO05D010156 7.5e-39 164.9 234 43.2
RcHm_v2.0_Chr5g0013271 Rosa chinensis HOM05D008090 ORTHO05D010156 7.5e-39 164.9 235 45.1
Manes.17G067400 Manihot esculenta HOM05D008090 ORTHO05D010156 9.7e-39 164.5 238 43.7
FAN16G3306 Fragaria x ananassa HOM05D008090 ORTHO05D010156 8.2e-38 161.4 237 43.9
FAN25G1154 Fragaria x ananassa HOM05D008090 ORTHO05D010156 1.1e-37 161.0 238 42.4
RcHm_v2.0_Chr5g0013301 Rosa chinensis HOM05D008090 ORTHO05D010156 1.4e-37 160.6 236 44.5
Sc17g0005080 Simmondsia chinensis HOM05D008090 ORTHO05D010156 1.2e-36 157.5 244 40.2
QL05p059335 Quercus lobata HOM05D008090 ORTHO05D010156 2.0e-36 156.8 241 42.3
ClCG03G006940 Citrullus lanatus HOM05D008090 ORTHO05D010156 2.6e-36 156.4 241 42.7
Rhsim13G0192500 Rhododendron simsii HOM05D008090 ORTHO05D010156 4.5e-36 155.6 239 45.2
Lj4g0014733 Lotus japonicus HOM05D008090 ORTHO05D010156 2.2e-35 153.3 234 42.7
AUR62035141 Chenopodium quinoa HOM05D008090 ORTHO05D010156 3.8e-35 152.5 229 44.1
Potri.004G065500 Populus trichocarpa HOM05D008090 ORTHO05D010156 6.5e-35 151.8 225 43.6
COL.COLO4_06066 Corchorus olitorius HOM05D008090 ORTHO05D010156 1.5e-34 150.6 238 44.1
Gohir.D06G141600 Gossypium hirsutum HOM05D008090 ORTHO05D010156 1.9e-34 150.2 226 46.5
Gorai.010G165200 Gossypium raimondii HOM05D008090 ORTHO05D010156 1.9e-34 150.2 226 46.5
TAR629G2487 Trochodendron aralioides HOM05D008090 ORTHO05D010156 1.9e-34 150.2 240 43.8
MD05G1289100 Malus domestica HOM05D008090 ORTHO05D010156 2.5e-34 149.8 236 41.9
Sabra04G0043800 Salix brachista HOM05D008090 ORTHO05D010156 7.2e-34 148.3 221 43.4
Hund17789 Selenicereus undatus HOM05D008090 ORTHO05D010156 1.2e-33 147.5 231 42.9
Thecc.06G154700 Theobroma cacao HOM05D008090 ORTHO05D010156 1.2e-33 147.5 239 43.9
FAN11G2783 Fragaria x ananassa HOM05D000133 ORTHO05D010156 2.1e-33 146.7 235 40.9
MBI07_g21779_MAGBIO Magnolia biondii HOM05D008090 ORTHO05D010156 2.1e-33 146.7 232 44.0
EL10Ac4g09546 Beta vulgaris HOM05D008090 ORTHO05D010156 2.7e-33 146.4 242 42.1
Gohir.A06G136400 Gossypium hirsutum HOM05D008090 ORTHO05D010156 2.7e-33 146.4 229 45.9
Lj2P974T32 Lonicera japonica HOM05D008090 ORTHO05D010156 3.6e-33 146.0 214 46.3
Nn3g17305 Nelumbo nucifera HOM05D008090 ORTHO05D010156 6.1e-33 145.2 238 40.8
Psat7g091840 Pisum sativum HOM05D008090 ORTHO05D010156 1.0e-32 144.4 223 42.6
MELO3C002726.2 Cucumis melo HOM05D008090 ORTHO05D010156 1.4e-32 144.1 231 42.4
Sed0014565 Sechium edule HOM05D008090 ORTHO05D010156 1.8e-32 143.7 244 41.8
CsaV3_1G032520 Cucumis sativus L. HOM05D008090 ORTHO05D010156 6.8e-32 141.7 238 42.0
Medtr4g094608 Medicago truncatula HOM05D008090 ORTHO05D010156 2.0e-31 140.2 224 42.9
Lalb_Chr03g0037351 Lupinus albus HOM05D008090 ORTHO05D010156 2.6e-31 139.8 226 41.2
arahy.Tifrunner.gnm1.ann1.S5KLBV Arachis hypogaea HOM05D008090 ORTHO05D010156 3.4e-31 139.4 218 41.7
arahy.Tifrunner.gnm1.ann1.548L12 Arachis hypogaea HOM05D008090 ORTHO05D010156 4.4e-31 139.0 214 42.5
DCAR_003940 Daucus carota HOM05D000013 ORTHO05D010156 9.8e-31 137.9 151 54.3
PGSC0003DMG400008321 Solanum tuberosum HOM05D008090 ORTHO05D010156 3.7e-30 136.0 79 83.5
SGA_v2.0_scaffold1G00152 Striga asiatica HOM05D008090 ORTHO05D010156 4.8e-30 135.6 237 40.5
TPR.G4884 Trifolium pratense HOM05D000133 ORTHO05D000259 1.4e-29 134.0 229 41.5
Oeu019949.1 Olea europaea HOM05D008090 ORTHO05D010156 9.1e-29 131.3 107 63.6
Phvul.002G196300 Phaseolus vulgaris HOM05D008090 ORTHO05D010156 9.1e-29 131.3 215 43.3
FvH4_3g06110 Fragaria vesca HOM05D000133 ORTHO05D000259 1.6e-28 130.6 158 48.1
Ah.00g001040 Amaranthus hybridus HOM05D008090 ORTHO05D010156 3.5e-28 129.4 228 38.2
ECA234G1353 Erigeron canadensis HOM05D008090 ORTHO05D010156 3.5e-28 129.4 216 40.7
Glyma.05G128100 Glycine max HOM05D008090 ORTHO05D010156 3.5e-28 129.4 224 41.5
CANSAT35G0881 Cannabis sativa HOM05D008090 ORTHO05D010156 4.5e-28 129.0 233 41.6
Aqoxy4G00119 Aquilegia oxysepala HOM05D008090 ORTHO05D010156 3.8e-27 125.9 231 37.7
Lsat_1_v5_gn_4_30220 Lactuca sativa HOM05D008090 ORTHO05D010156 1.1e-26 124.4 232 39.7
TAR629G3101 Trochodendron aralioides HOM05D008090 ORTHO05D010156 1.2e-25 120.9 198 42.9
Ca_18277_v3 Cicer arietinum L. HOM05D000133 ORTHO05D000259 2.3e-24 116.7 121 51.2
TWI09G1028 Tripterygium wilfordii HOM05D008090 ORTHO05D010156 8.8e-24 114.8 232 38.8
VMungo0251G0641 Vigna mungo HOM05D008090 ORTHO05D010156 4.4e-23 112.5 213 36.2
HanXRQChr17g0565011 Helianthus annuus HOM05D008090 ORTHO05D010156 1.4e-21 107.5 214 39.7
MBI19_g47931_MAGBIO Magnolia biondii HOM05D008090 ORTHO05D010156 2.9e-19 99.8 181 39.8
Os01g0243600 Oryza sativa ssp. japonica HOM05D008090 ORTHO05D010156 1.9e-18 97.1 235 32.8
SEGI_25907 Sequoiadendron giganteum HOM05D008090 ORTHO05D010156 3.2e-13 79.7 223 28.3
Actinidia19510 Actinidia chinensis HOM05D008090 ORTHO05D010156 3.5e-12 76.3 145 40.7
ATR0681G183 Amborella trichopoda HOM05D008090 ORTHO05D010156 1.3e-11 74.3 227 30.8
Ciclev10027155m.g Citrus clementina HOM05D008090 ORTHO05D010156 2.3e-11 73.6 131 35.9
Zm00001eb079770 Zea mays HOM05D008090 ORTHO05D010156 9.5e-10 68.2 87 42.5


User provided reference genes

Program Settings