Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 3866.6 1944 100.0
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 3791.5 1947 98.2
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 3764.9 1946 97.5
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 3461.8 1948 89.6
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 3411.7 1965 87.4
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 3368.9 1961 86.5
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 3243.4 1949 83.5
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2483.8 1955 64.3
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2365.1 2050 59.8
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 2350.1 1946 59.8
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2338.9 1961 60.3
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 2315.0 1953 60.2
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2314.3 1958 59.9
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2313.1 1970 60.4
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2296.2 1956 59.2
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2290.4 1957 58.9
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2284.2 1958 59.1
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 2266.5 1948 59.1
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2261.1 2156 55.0
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2242.2 1960 58.3
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2241.5 1966 58.2
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2222.6 1966 57.7
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2214.1 1981 57.8
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2213.0 1957 57.3
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2213.0 1953 57.2
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2212.6 1969 58.4
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2205.6 1960 57.4
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 2203.7 1948 57.9
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2202.9 1957 57.6
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2196.0 1958 56.4
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 2194.1 1966 57.4
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2192.9 1957 57.5
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2188.7 1956 56.7
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 2179.4 1939 57.8
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2178.3 1943 56.6
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2177.5 1939 56.5
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2172.5 1939 56.4
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2169.8 1937 57.3
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2168.3 1946 56.4
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 2167.5 2127 53.9
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2164.0 1941 56.6
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2154.8 1934 57.8
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2131.7 1980 55.8
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2122.4 1966 55.0
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2115.1 1966 54.5
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2105.9 1857 57.2
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 2100.9 1969 54.8
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2067.4 2156 51.2
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 2065.4 1952 54.1
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 2062.3 2255 48.7
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 2061.6 1961 55.7
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 2051.6 1962 55.0
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2037.3 1823 56.1
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 2025.0 1965 53.5
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2024.6 1959 53.5
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 2024.2 1971 53.2
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 2020.4 1965 54.2
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 2015.7 1961 53.2
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2014.2 1961 52.9
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 2012.7 1962 53.2
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 2007.3 1974 53.1
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1999.9 1966 53.0
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1999.2 1958 53.3
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 1996.1 1977 52.5
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1995.7 1810 56.2
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 1994.9 1967 52.7
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 1986.5 1962 52.8
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1980.3 1992 52.1
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 1977.6 2009 50.8
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1977.2 1993 52.0
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1930.2 1939 51.9
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 1928.7 1598 61.2
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1901.7 1972 51.0
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1854.0 1953 49.9
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1851.6 1949 51.2
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1814.3 1838 52.1
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1757.3 1997 46.9
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1664.0 1276 64.4
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1483.8 1189 62.6
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1375.1 1838 42.2
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1370.5 1274 56.2
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1300.8 1433 48.8
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1216.8 2020 37.5
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1198.7 2060 36.2
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1184.1 1077 56.1
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1150.6 2021 36.7
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1135.6 1166 52.5
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 3.5e-310 1069.3 1002 54.5
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 1.0e-285 988.0 2144 33.3
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 2.8e-259 900.2 775 59.2
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 4.6e-254 882.9 949 50.7
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 3.7e-235 820.1 888 49.4
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 6.9e-234 815.8 995 45.4
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 3.2e-231 807.0 774 53.7
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 1.3e-224 785.0 1123 41.1
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 6.5e-224 782.7 984 45.0
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 9.4e-183 646.0 489 67.1
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 6.3e-179 633.3 669 52.6
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 1.7e-163 582.0 532 56.6
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 9.2e-162 576.2 525 55.8
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 4.6e-153 547.4 519 55.9
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 2.9e-131 474.9 399 59.9
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 1.2e-129 469.5 450 52.9
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 1.3e-128 466.1 654 42.4
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 5.8e-124 450.7 432 52.8
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 3.0e-120 438.3 299 72.2
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 8.7e-112 410.2 848 32.4
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 1.0e-88 333.6 215 76.3
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 2.3e-88 332.4 255 61.2
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 3.0e-88 332.0 396 44.9
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 3.9e-88 331.6 336 52.1
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 4.5e-84 318.2 333 54.1
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 2.2e-67 262.7 374 41.7
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 3.2e-66 258.8 231 56.3
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 8.6e-59 234.2 231 53.7
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 4.1e-53 215.3 311 41.5
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 4.1e-53 215.3 195 55.4
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 2.0e-52 213.0 294 40.1
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 3.0e-51 209.1 195 53.3
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 9.5e-50 204.1 526 31.4
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 9.8e-47 194.1 206 48.1
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 8.1e-41 174.5 296 36.5
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 8.4e-30 137.9 140 52.9
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 1.6e-28 133.7 221 38.0
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 3.5e-28 132.5 281 33.8
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 1.2e-25 124.0 97 62.9
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.1e-24 120.9 140 49.3
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 1.5e-23 117.1 125 47.2
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 7.6e-23 114.8 114 50.9
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 1.3e-22 114.0 127 48.8
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 3.8e-22 112.5 159 44.0
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 6.0e-20 105.1 100 52.0
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 1.3e-19 104.0 290 28.3
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 2.3e-19 103.2 285 27.7
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 9.0e-16 91.3 141 36.9
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 3.4e-15 89.4 99 46.5
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 4.4e-15 89.0 198 31.3
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 7.6e-15 88.2 132 40.2
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 2.9e-14 86.3 74 56.8
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 2.9e-14 86.3 74 56.8
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 6.4e-14 85.1 99 45.5
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 6.4e-14 85.1 74 55.4
Psat7g053800 Pisum sativum HOM05D001135 ORTHO05D001005 6.4e-14 85.1 116 37.9
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.4e-13 84.0 75 49.3
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 1.9e-13 83.6 135 37.0
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 5.4e-13 82.0 88 43.2
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 1.6e-12 80.5 135 36.3
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 3.0e-11 76.3 204 26.5
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 8.7e-11 74.7 136 35.3
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 7.4e-10 71.6 114 38.6
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 3.6e-09 69.3 133 33.8
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 4.8e-09 68.9 94 42.6
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 1.4e-08 67.4 73 38.4
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 1.8e-08 67.0 49 61.2
Psat4g170200 Pisum sativum HOM05D003662 ORTHO05D001824 2.4e-08 66.6 55 52.7
Actinidia30715 Actinidia chinensis HOM05D004963 ORTHO05D006638 1.2e-07 64.3 111 36.9
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 1.2e-07 64.3 73 41.1
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 1.2e-07 64.3 54 57.4
Psat7g026160 Pisum sativum HOM05D004963 ORTHO05D001824 4.5e-07 62.4 59 47.5
SMO144G0155 Selaginella moellendorffii HOM05D004963 ORTHO05D379285 6.4e-06 58.5 152 33.6
Zm00001eb150600 Zea mays HOM05D004963 ORTHO05D006638 6.4e-06 58.5 64 37.5


User provided reference genes

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