Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g019780 Solanum pennellii HOM05D006343 ORTHO05D005694 5.0e-128 461.5 295 100.0
Solyc02g070700.3 Solanum lycopersicum HOM05D006343 ORTHO05D005694 2.8e-118 429.1 296 94.6
Nitab4.5_0001040g0020 Nicotiana tabacum HOM05D006343 ORTHO05D005694 1.9e-58 230.3 328 50.3
Nitab4.5_0001655g0110 Nicotiana tabacum HOM05D006343 ORTHO05D005694 1.9e-58 230.3 332 49.1
CAN.G650.25 Capsicum annuum HOM05D006343 ORTHO05D005694 4.3e-55 219.2 322 47.5
CAN.G650.32 Capsicum annuum HOM05D006343 ORTHO05D005694 1.6e-54 217.2 329 49.8
CAN.G650.35 Capsicum annuum HOM05D006343 ORTHO05D005694 4.2e-50 202.6 323 47.7
CAN.G2424.1 Capsicum annuum HOM05D006343 ORTHO05D005694 4.6e-49 199.1 354 45.5
CAN.G650.28 Capsicum annuum HOM05D006343 ORTHO05D005694 1.6e-46 190.7 246 56.1
PGSC0003DMG400008290 Solanum tuberosum HOM05D006343 ORTHO05D005694 2.2e-46 190.3 187 79.1
Dinv43841 Davidia involucrata HOM05D006343 ORTHO05D005694 1.3e-27 127.9 308 36.4
GSVIVG01026998001 Vitis vinifera HOM05D006343 ORTHO05D005694 4.7e-25 119.4 323 37.5
Oeu055797.1 Olea europaea HOM05D006343 ORTHO05D005694 3.9e-24 116.3 316 34.2
Ciclev10021525m.g Citrus clementina HOM05D006343 ORTHO05D005694 5.2e-24 115.9 331 32.3
SalBow6G3791 Salvia bowleyana HOM05D006343 ORTHO05D005694 6.7e-24 115.5 306 37.3
Hma1.2p1_0702F.1_g206150 Hydrangea macrophylla HOM05D006343 ORTHO05D005694 5.7e-23 112.5 313 37.1
MSTRG.18339 Avicennia marina HOM05D006343 ORTHO05D005694 9.7e-23 111.7 306 33.7
Rhsim01G0164400 Rhododendron simsii HOM05D006343 ORTHO05D005694 2.8e-22 110.2 325 32.0
TAR629G3314 Trochodendron aralioides HOM05D006343 ORTHO05D005694 4.8e-22 109.4 308 33.1
Actinidia20887 Actinidia chinensis HOM05D006343 ORTHO05D005694 2.0e-20 104.0 314 31.8
Oeu035725.1 Olea europaea HOM05D003054 ORTHO05D003376 4.5e-20 102.8 271 33.6
Oeu035731.1 Olea europaea HOM05D006343 ORTHO05D005694 7.7e-20 102.1 323 31.9
Nitab4.5_0003369g0030 Nicotiana tabacum HOM05D006343 ORTHO05D005694 1.0e-19 101.7 334 33.8
Potri.014G087500 Populus trichocarpa HOM05D006343 ORTHO05D005694 5.0e-19 99.4 333 32.1
CiPaw.02G033200 Carya illinoinensis HOM05D006343 ORTHO05D005694 8.5e-19 98.6 339 31.6
Nitab4.5_0002749g0010 Nicotiana tabacum HOM05D006343 ORTHO05D005694 8.5e-19 98.6 337 32.6
Oeu035719.1 Olea europaea HOM05D003054 ORTHO05D003376 8.5e-19 98.6 307 35.8
Sabra14G0063500 Salix brachista HOM05D006343 ORTHO05D005694 7.2e-18 95.5 333 30.3
Manes.01G254700 Manihot esculenta HOM05D006343 ORTHO05D005694 9.4e-18 95.1 336 32.4
Atru.chr5.528 Acer truncatum HOM05D006343 ORTHO05D005694 1.2e-17 94.7 320 31.6
Potri.002G161700 Populus trichocarpa HOM05D006343 ORTHO05D005694 1.2e-17 94.7 333 31.2
Lsat_1_v5_gn_7_4100 Lactuca sativa HOM05D006343 ORTHO05D005694 1.6e-17 94.4 329 30.1
MSTRG.12522 Avicennia marina HOM05D006343 ORTHO05D005694 3.6e-17 93.2 312 33.3
Rhsim06G0236200 Rhododendron simsii HOM05D006343 ORTHO05D005694 3.6e-17 93.2 317 30.6
Lsat_1_v5_gn_7_4060 Lactuca sativa HOM05D006343 ORTHO05D005694 4.7e-17 92.8 325 29.5
Oeu035722.1 Olea europaea HOM05D006343 ORTHO05D005694 6.1e-17 92.4 313 30.4
Sabra02G0128600 Salix brachista HOM05D006343 ORTHO05D005694 8.0e-17 92.0 333 31.5
Rhsim01G0164000 Rhododendron simsii HOM05D006343 ORTHO05D005694 1.4e-16 91.3 334 31.7
Cc02_g38320 Coffea canephora HOM05D006343 ORTHO05D005694 2.3e-16 90.5 326 32.2
PGR042G0313 Punica granatum HOM05D006343 ORTHO05D005694 2.3e-16 90.5 200 34.0
Manes.05G031900 Manihot esculenta HOM05D006343 ORTHO05D005694 5.2e-16 89.4 342 32.7
Glyma.07G068200 Glycine max HOM05D006343 ORTHO05D005694 6.8e-16 89.0 337 30.6
Prupe.2G173800 Prunus persica HOM05D006343 ORTHO05D005694 6.8e-16 89.0 321 30.5
CSS0004449 Camellia sinensis var. sinensis HOM05D006343 ORTHO05D005694 1.2e-15 88.2 321 32.4
SGA_v2.0_scaffold1G00635 Striga asiatica HOM05D006343 ORTHO05D005694 1.2e-15 88.2 342 29.5
vmacro20913 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 1.3e-14 84.7 337 27.6
CiPaw.01G064000 Carya illinoinensis HOM05D006343 ORTHO05D005694 2.8e-14 83.6 341 36.4
FvH4_7g14980 Fragaria vesca HOM05D006343 ORTHO05D005694 2.8e-14 83.6 235 27.2
VMungo0331G0061 Vigna mungo HOM05D006343 ORTHO05D005694 3.7e-14 83.2 323 30.7
Dinv32502 Davidia involucrata HOM05D006343 ORTHO05D005694 6.3e-14 82.4 230 34.3
FAN06G0921 Fragaria x ananassa HOM05D006343 ORTHO05D005694 8.3e-14 82.0 235 27.7
FAN10G0914 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.8e-13 80.9 322 25.2
Nn1g01591 Nelumbo nucifera HOM05D006343 ORTHO05D005694 1.8e-13 80.9 238 39.1
FAN01G0301 Fragaria x ananassa HOM05D006343 ORTHO05D005694 7.0e-13 79.0 325 25.8
CANSAT56G2487 Cannabis sativa HOM05D006343 ORTHO05D005694 9.1e-13 78.6 332 32.5
FAN03G1905 Fragaria x ananassa HOM05D006343 ORTHO05D005694 9.1e-13 78.6 320 24.7
FAN10G3829 Fragaria x ananassa HOM05D006343 ORTHO05D005694 5.9e-12 75.9 322 25.2
Glyma.16G034200 Glycine max HOM05D006343 ORTHO05D005694 5.9e-12 75.9 345 27.5
Phvul.010G101000 Phaseolus vulgaris HOM05D006343 ORTHO05D005694 5.9e-12 75.9 320 30.3
Eucgr.I00992 Eucalyptus grandis HOM05D006343 ORTHO05D005694 7.7e-12 75.5 319 30.4
QL04p054168 Quercus lobata HOM05D006343 ORTHO05D005694 7.7e-12 75.5 246 40.2
RcHm_v2.0_Chr1g0357021 Rosa chinensis HOM05D006343 ORTHO05D005694 1.7e-11 74.3 320 24.7
vmacro20912 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 1.7e-11 74.3 336 26.5
unitig_22.g5289 Utricularia gibba HOM05D006343 ORTHO05D005694 2.2e-11 73.9 307 29.6
MD07G1133500 Malus domestica HOM05D006343 ORTHO05D005694 1.1e-10 71.6 326 34.7
DCAR_015701 Daucus carota HOM05D006343 ORTHO05D005694 3.2e-10 70.1 298 29.9
FAN10G3360 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.2e-10 70.1 176 27.8
MD01G1067400 Malus domestica HOM05D006343 ORTHO05D005694 5.5e-10 69.3 340 28.8
CsaV3_6G000720 Cucumis sativus L. HOM05D006343 ORTHO05D005694 7.2e-10 68.9 323 30.7
CDE02G1832 Ceratophyllum demersum HOM05D006343 ORTHO05D005694 9.4e-10 68.6 308 26.0
FAN06G3127 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.2e-09 68.2 177 28.2
FAN10G1634 Fragaria x ananassa HOM05D006343 ORTHO05D005694 2.7e-09 67.0 176 27.3
FvH4_7g14870 Fragaria vesca HOM05D006343 ORTHO05D005694 1.0e-08 65.1 323 26.6
FAN03G1311 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.0e-08 65.1 328 25.9
CAN.G342.1 Capsicum annuum HOM05D006343 ORTHO05D005694 2.3e-08 63.9 175 38.3
FAN10G3545 Fragaria x ananassa HOM05D006343 ORTHO05D005694 2.3e-08 63.9 346 24.9
FvH4_7g14880 Fragaria vesca HOM05D006343 ORTHO05D005694 3.0e-08 63.5 177 30.5
FAN06G0140 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.0e-08 63.5 177 30.5
Oeu035728.1 Olea europaea HOM05D006343 ORTHO05D005694 5.2e-08 62.8 322 28.3
CAN.G526.2 Capsicum annuum HOM05D006343 ORTHO05D005694 6.8e-08 62.4 180 34.4
Lalb_Chr17g0339411 Lupinus albus HOM05D006343 ORTHO05D005694 6.8e-08 62.4 240 36.7
MELO3C021196.2 Cucumis melo HOM05D006343 ORTHO05D005694 1.2e-07 61.6 325 34.5
FAN10G3557 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.5e-07 61.2 329 24.9
Aqoxy7G00256 Aquilegia oxysepala HOM05D006343 ORTHO05D005694 4.4e-07 59.7 333 36.6
Sed0018743 Sechium edule HOM05D006343 ORTHO05D005694 5.7e-07 59.3 315 34.3
FAN06G4353 Fragaria x ananassa HOM05D006343 ORTHO05D005694 7.5e-07 58.9 324 25.9
Lj3g0021957 Lotus japonicus HOM05D006343 ORTHO05D005694 1.3e-06 58.2 250 27.6
ECA233G1044 Erigeron canadensis HOM05D006343 ORTHO05D005694 2.2e-06 57.4 282 29.4
Medtr8g028845 Medicago truncatula HOM05D006343 ORTHO05D005694 2.8e-06 57.0 48 60.4
Medtr8g028835 Medicago truncatula HOM05D006343 ORTHO05D005694 6.3e-06 55.8 52 53.8


User provided reference genes

Program Settings