Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 1.2e-150 536.6 279 100.0
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 1.2e-147 526.6 279 97.1
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 1.9e-145 519.2 285 96.1
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 2.3e-143 512.3 279 95.7
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 8.3e-141 503.8 279 91.8
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 2.7e-139 498.8 279 91.8
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 3.6e-136 488.4 249 93.2
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 3.6e-136 488.4 250 92.8
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 3.6e-136 488.4 250 92.8
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 4.7e-136 488.0 285 88.8
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 6.2e-136 487.6 251 92.4
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 1.4e-135 486.5 283 89.0
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 2.3e-135 485.7 250 92.8
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 3.1e-135 485.3 279 86.0
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 6.8e-135 484.2 250 92.4
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 1.5e-134 483.0 255 91.8
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 2.0e-134 482.6 254 91.7
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 2.0e-134 482.6 250 92.0
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 2.6e-134 482.3 251 91.6
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 3.4e-134 481.9 253 90.9
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 3.4e-134 481.9 253 90.1
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 4.4e-134 481.5 286 88.1
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 4.4e-134 481.5 249 92.4
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 4.4e-134 481.5 249 93.2
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 5.8e-134 481.1 281 88.3
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 5.8e-134 481.1 247 92.7
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 7.5e-134 480.7 254 90.2
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 7.5e-134 480.7 252 90.9
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 7.5e-134 480.7 251 90.8
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 1.3e-133 479.9 249 92.4
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 1.3e-133 479.9 254 89.4
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 1.7e-133 479.6 284 86.6
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 1.7e-133 479.6 279 88.5
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 2.2e-133 479.2 249 91.6
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 2.2e-133 479.2 252 90.5
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.7e-133 478.4 276 89.1
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 3.7e-133 478.4 276 90.2
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 4.9e-133 478.0 255 91.0
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.9e-133 478.0 255 91.0
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 4.9e-133 478.0 279 87.1
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 6.4e-133 477.6 251 91.2
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 8.3e-133 477.2 279 84.9
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 1.1e-132 476.9 249 92.0
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 1.1e-132 476.9 281 87.9
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 1.1e-132 476.9 281 87.9
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 1.1e-132 476.9 290 86.9
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 1.1e-132 476.9 250 90.8
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.4e-132 476.5 251 90.8
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.9e-132 476.1 276 88.8
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 1.9e-132 476.1 248 91.1
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 3.2e-132 475.3 250 90.4
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 3.2e-132 475.3 249 92.4
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 4.1e-132 474.9 281 88.6
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 4.1e-132 474.9 279 87.5
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 1.6e-131 473.0 254 88.6
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 2.1e-131 472.6 255 89.0
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 3.5e-131 471.9 281 87.9
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 4.6e-131 471.5 244 93.9
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 4.6e-131 471.5 275 87.6
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 6.0e-131 471.1 250 89.2
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 7.8e-131 470.7 251 89.2
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 7.8e-131 470.7 252 90.1
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 1.0e-130 470.3 249 90.0
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 1.3e-130 469.9 299 84.3
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 1.7e-130 469.5 279 87.1
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.7e-130 469.5 249 89.6
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 2.3e-130 469.2 254 87.8
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 2.3e-130 469.2 249 89.6
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 2.3e-130 469.2 252 88.5
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 3.0e-130 468.8 250 90.4
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 3.0e-130 468.8 280 86.1
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 3.9e-130 468.4 250 89.6
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 1.1e-129 466.8 250 89.6
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 1.1e-129 466.8 249 89.6
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 1.5e-129 466.5 251 88.4
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 1.9e-129 466.1 249 89.6
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 2.5e-129 465.7 250 90.0
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 5.6e-129 464.5 250 90.0
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 7.3e-129 464.2 255 86.7
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 7.3e-129 464.2 246 90.7
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 1.2e-128 463.4 249 88.8
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 3.6e-128 461.8 279 83.2
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 3.6e-128 461.8 246 90.2
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 6.2e-128 461.1 245 90.6
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 1.8e-127 459.5 247 88.3
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 2.3e-127 459.1 251 86.9
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 8.4e-125 450.7 250 85.6
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 9.2e-124 447.2 248 87.1
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 3.5e-123 445.3 250 86.0
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 1.3e-122 443.4 249 86.7
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 6.6e-122 441.0 267 82.8
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 8.6e-122 440.7 248 84.3
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 8.1e-120 434.1 228 91.7
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 4.4e-118 428.3 239 84.5
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 9.9e-118 427.2 249 81.5
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 2.2e-117 426.0 353 64.9
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 2.9e-117 425.6 223 91.9
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 1.9e-116 422.9 250 82.4
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 3.9e-114 415.2 242 81.8
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 1.1e-111 407.1 251 76.9
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 2.3e-106 389.4 220 86.8
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 6.0e-99 364.8 191 93.2
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 6.9e-95 351.3 189 90.5
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 1.4e-92 343.6 243 68.7
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 5.5e-92 341.7 171 97.7
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 5.7e-89 331.6 171 93.0
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 2.6e-86 322.8 168 93.5
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 2.6e-86 322.8 181 88.4
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 6.1e-83 311.6 196 87.2
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 2.3e-82 309.7 183 83.6
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 1.4e-76 290.4 185 75.7
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.1e-75 285.0 164 86.0
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.7e-74 281.6 164 83.5
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.0e-73 280.0 164 84.8
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 2.6e-73 279.6 145 94.5
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 2.0e-70 270.0 147 90.5
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.4e-70 269.2 177 77.4
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 1.0e-69 267.7 155 86.5
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 1.4e-68 263.8 155 85.2
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.2e-68 262.7 213 66.2
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 1.2e-67 260.8 153 82.4
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 5.2e-66 255.4 156 80.8
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 3.8e-61 239.2 148 80.4
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 2.2e-53 213.4 191 54.5
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 3.2e-52 209.5 141 75.2
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.2e-52 209.1 151 71.5
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 3.4e-41 172.9 167 58.1
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 1.7e-40 170.6 93 88.2
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 3.2e-31 139.8 76 90.8
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 4.3e-28 129.4 190 44.7
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 4.3e-28 129.4 88 79.5
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 8.9e-26 121.7 71 81.7
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 1.2e-25 121.3 93 66.7
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 1.9e-20 104.0 55 85.5
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 5.6e-20 102.4 55 83.6
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 4.0e-18 96.3 50 86.0
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 1.4e-15 87.8 46 82.6


User provided reference genes

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