Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 3.8e-293 1010.7 508 100.0
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 5.3e-279 963.8 511 95.9
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 5.7e-265 917.1 457 99.6
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 2.0e-233 812.4 518 82.2
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 1.1e-231 806.6 517 81.4
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 1.1e-231 806.6 512 81.6
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 2.3e-229 798.9 513 79.7
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 9.4e-183 644.0 498 69.7
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 2.2e-171 606.3 468 64.5
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 2.5e-167 592.8 467 62.3
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 1.6e-166 590.1 493 61.3
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 2.1e-166 589.7 481 62.6
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 2.1e-166 589.7 465 64.1
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 5.2e-165 585.1 489 62.8
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 2.6e-164 582.8 484 62.0
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 1.7e-163 580.1 487 60.6
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 1.8e-162 576.6 478 62.8
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 2.7e-161 572.8 467 61.9
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 1.7e-160 570.1 485 60.6
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 5.0e-160 568.5 488 59.8
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 5.0e-160 568.5 475 60.8
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 6.5e-160 568.2 467 61.2
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 4.2e-159 565.5 455 62.2
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 5.5e-159 565.1 463 61.1
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 5.5e-159 565.1 470 60.6
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 7.2e-159 564.7 389 70.4
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.0e-157 560.8 465 60.0
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 1.8e-157 560.1 465 60.0
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 5.2e-157 558.5 489 58.5
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 5.2e-157 558.5 470 59.6
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.2e-156 557.4 513 57.1
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 1.2e-156 557.4 468 61.3
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 1.5e-156 557.0 492 57.3
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 1.5e-156 557.0 495 57.8
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 4.4e-156 555.4 469 61.0
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 5.7e-156 555.1 462 59.5
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 5.7e-156 555.1 462 59.3
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.3e-155 553.9 513 56.7
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 2.2e-155 553.1 471 59.9
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 2.8e-155 552.7 418 65.6
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 6.3e-155 551.6 457 59.3
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 1.4e-154 550.4 448 59.2
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 2.4e-154 549.7 462 59.1
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 9.1e-154 547.7 477 57.9
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 1.6e-153 547.0 456 59.9
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 3.5e-153 545.8 474 60.3
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 3.5e-153 545.8 443 60.5
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 5.9e-153 545.0 481 57.6
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 7.7e-153 544.7 466 59.9
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 7.7e-153 544.7 486 59.1
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 1.0e-152 544.3 462 59.3
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 2.9e-152 542.7 455 59.6
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.5e-151 539.7 404 64.6
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.3e-151 539.3 404 64.6
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 4.2e-151 538.9 489 57.7
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 7.2e-151 538.1 528 56.1
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 1.6e-150 537.0 458 60.5
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 2.1e-150 536.6 463 58.7
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 4.7e-150 535.4 482 58.7
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 1.0e-149 534.3 464 58.0
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 2.0e-148 530.0 446 59.6
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 2.6e-148 529.6 463 56.2
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.4e-148 529.3 475 57.9
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 4.4e-148 528.9 405 63.0
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 7.5e-148 528.1 482 57.5
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 6.3e-147 525.0 513 55.0
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 1.1e-146 524.2 458 57.6
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 1.4e-146 523.9 480 57.9
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 1.2e-145 520.8 455 56.9
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.0e-145 520.0 506 54.3
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 2.7e-145 519.6 456 57.2
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 7.8e-145 518.1 441 58.3
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 6.6e-144 515.0 456 58.3
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 1.2e-142 510.8 470 56.6
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 1.6e-142 510.4 484 57.0
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 2.2e-139 500.0 467 55.9
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 4.9e-139 498.8 470 55.7
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 1.4e-138 497.3 451 57.0
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 7.0e-138 495.0 355 67.9
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 2.7e-137 493.0 451 58.3
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 1.0e-136 491.1 468 55.8
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 1.7e-136 490.3 489 55.4
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 1.5e-135 487.3 450 56.2
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 5.6e-135 485.3 485 54.0
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 7.3e-135 485.0 483 54.5
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 7.3e-135 485.0 458 55.9
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 6.2e-134 481.9 450 55.8
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 6.2e-134 481.9 450 55.8
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 5.2e-133 478.8 448 56.5
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 3.2e-130 469.5 448 55.6
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.2e-129 467.6 458 55.0
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 6.0e-129 465.3 486 55.1
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 2.0e-124 450.3 332 66.0
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 4.6e-121 439.1 388 56.4
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 8.1e-118 428.3 498 47.0
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 6.8e-117 425.2 451 50.1
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 1.1e-114 417.9 453 49.9
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 2.3e-112 410.2 336 59.5
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 2.5e-111 406.8 418 53.3
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 4.9e-107 392.5 414 49.3
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 6.4e-107 392.1 417 49.2
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 3.0e-96 356.7 401 47.4
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 6.7e-88 328.9 349 52.1
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.2e-82 310.1 215 68.8
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 1.6e-73 281.2 373 41.6
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 7.2e-66 255.8 207 67.1
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 9.4e-66 255.4 348 46.0
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.9e-64 250.0 192 60.9
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 1.1e-58 231.9 184 62.5
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 2.5e-42 177.6 106 84.0
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 3.0e-40 170.6 310 34.2
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 1.6e-28 131.7 122 56.6
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.2e-23 115.5 179 44.1
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 1.4e-21 108.6 226 31.4
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 1.7e-19 101.7 289 25.6
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 2.8e-17 94.4 70 62.9
Pp3c13_18720 Physcomitrium patens HOM05D006770 ORTHO05D008356 5.2e-16 90.1 204 28.9
Pp3c13_18722 Physcomitrium patens HOM05D006770 ORTHO05D008356 5.2e-16 90.1 204 28.9
vmacro02831 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 3.7e-14 84.0 124 45.2
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 1.6e-09 68.6 281 24.2
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 2.8e-09 67.8 110 30.9
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 1.8e-08 65.1 281 23.8
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 3.1e-08 64.3 129 28.7
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 4.0e-08 63.9 176 22.2
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 4.0e-08 63.9 176 22.2
TAR381G0468 Trochodendron aralioides HOM05D006770 ORTHO05D008356 6.8e-08 63.2 88 44.3
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 8.9e-08 62.8 129 27.1
EL10Ac2g02881 Beta vulgaris HOM05D005973 ORTHO05D007285 2.0e-07 61.6 94 34.0
EL10Ac2g03340 Beta vulgaris HOM05D005973 ORTHO05D007285 2.0e-07 61.6 88 34.1
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 2.6e-07 61.2 129 27.1
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 3.4e-07 60.8 121 27.3
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 4.4e-07 60.5 172 26.7
PGSC0003DMG400024629 Solanum tuberosum HOM05D005362 ORTHO05D006895 7.6e-07 59.7 214 25.7
Rhsim12G0149500 Rhododendron simsii HOM05D005362 ORTHO05D006895 1.3e-06 58.9 214 23.4
Rhsim12G0149700 Rhododendron simsii HOM05D005362 ORTHO05D006895 1.3e-06 58.9 214 23.4
Solyc03g114920.1 Solanum lycopersicum HOM05D005362 ORTHO05D006895 1.3e-06 58.9 214 25.7
Peaxi162Scf00201g00422 Petunia axillaris HOM05D005362 ORTHO05D006895 2.2e-06 58.2 217 24.4
Aa31LG4G18220 Aethionema arabicum HOM05D000424 ORTHO05D000355 4.9e-06 57.0 115 27.0
CAN.G1228.5 Capsicum annuum HOM05D005362 ORTHO05D006895 4.9e-06 57.0 217 24.4
PSO017G2138 Papaver somniferum HOM05D005362 ORTHO05D006895 4.9e-06 57.0 215 23.7
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 8.4e-06 56.2 153 26.1


User provided reference genes

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