Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g018910 Solanum pennellii HOM05D000169 ORTHO05D007693 7.5e-33 143.3 73 100.0
Solyc02g069750.3 Solanum lycopersicum HOM05D001327 ORTHO05D002270 6.5e-29 130.2 69 94.2
PGSC0003DMG400021130 Solanum tuberosum HOM05D001327 ORTHO05D002270 9.4e-28 126.3 68 91.2
Solyc02g069920.4 Solanum lycopersicum HOM05D000169 ORTHO05D007693 9.8e-25 116.3 66 87.9
Sopen02g019060 Solanum pennellii HOM05D000169 ORTHO05D007693 9.8e-25 116.3 66 87.9
PGSC0003DMG400021188 Solanum tuberosum HOM05D000169 ORTHO05D007693 1.3e-24 115.9 66 87.9
CAN.G79.33 Capsicum annuum HOM05D000169 ORTHO05D007693 2.8e-24 114.8 69 82.6
Nitab4.5_0001225g0090 Nicotiana tabacum HOM05D000169 ORTHO05D007693 8.3e-24 113.2 66 83.3
Nitab4.5_0001583g0010 Nicotiana tabacum HOM05D000169 ORTHO05D007693 5.4e-23 110.5 66 81.8
SGA_v2.0_scaffold51G18657 Striga asiatica HOM05D004088 ORTHO05D007693 1.6e-19 99.0 66 71.2
Oeu008957.2 Olea europaea HOM05D000169 ORTHO05D007693 1.8e-18 95.5 66 69.7
MSTRG.16292 Avicennia marina HOM05D000169 ORTHO05D007693 8.9e-18 93.2 66 71.2
Migut.H01327 Erythranthe guttata HOM05D000169 ORTHO05D007693 1.5e-17 92.4 66 68.2
Dinv10791 Davidia involucrata HOM05D000169 ORTHO05D007693 1.3e-16 89.4 66 65.2
SalBow7G0208 Salvia bowleyana HOM05D000169 ORTHO05D007693 2.2e-16 88.6 66 66.7
CSS0003732 Camellia sinensis var. sinensis HOM05D000169 ORTHO05D007693 2.8e-16 88.2 66 68.2
Actinidia33686 Actinidia chinensis HOM05D000169 ORTHO05D007693 3.7e-16 87.8 66 66.7
CDE03G0252 Ceratophyllum demersum HOM05D000169 ORTHO05D007693 4.9e-16 87.4 66 60.6
FAN21G3676 Fragaria x ananassa HOM05D000169 ORTHO05D007693 6.3e-16 87.0 66 66.7
Potri.011G164100 Populus trichocarpa HOM05D000169 ORTHO05D007693 6.3e-16 87.0 66 65.2
Cc09_g04180 Coffea canephora HOM05D000169 ORTHO05D007693 8.3e-16 86.7 75 64.0
FAN25G2274 Fragaria x ananassa HOM05D000169 ORTHO05D007693 8.3e-16 86.7 66 66.7
vmacro03383 Vaccinium macrocarpon HOM05D000169 ORTHO05D007693 1.1e-15 86.3 66 65.2
vmacro03453 Vaccinium macrocarpon HOM05D000169 ORTHO05D007693 1.1e-15 86.3 66 65.2
Atru.chr10.844 Acer truncatum HOM05D000169 ORTHO05D007693 1.8e-15 85.5 66 65.2
Ciclev10017814m.g Citrus clementina HOM05D000169 ORTHO05D007693 1.8e-15 85.5 66 60.6
MELO3C007073.2 Cucumis melo HOM05D000169 ORTHO05D007693 1.8e-15 85.5 66 60.6
FAN16G2954 Fragaria x ananassa HOM05D000169 ORTHO05D007693 1.8e-15 85.5 66 65.2
Lj2C330T2 Lonicera japonica HOM05D000169 ORTHO05D007693 3.2e-15 84.7 66 65.2
Rhsim13G0121500 Rhododendron simsii HOM05D000169 ORTHO05D007693 3.2e-15 84.7 66 66.7
TWI15G0677 Tripterygium wilfordii HOM05D000169 ORTHO05D007693 3.2e-15 84.7 66 66.7
DCAR_004839 Daucus carota HOM05D000169 ORTHO05D007693 5.4e-15 84.0 67 67.2
DCAR_004840 Daucus carota HOM05D000169 ORTHO05D007693 5.4e-15 84.0 67 67.2
Sc10g0006290 Simmondsia chinensis HOM05D000169 ORTHO05D007693 5.4e-15 84.0 69 62.3
ClCG01G025160 Citrullus lanatus HOM05D000169 ORTHO05D007693 7.0e-15 83.6 66 59.1
Thhalv10007264m.g Eutrema salsugineum HOM05D000169 ORTHO05D007693 7.0e-15 83.6 66 57.6
FvH4_3g10160 Fragaria vesca HOM05D000169 ORTHO05D007693 9.2e-15 83.2 66 60.6
FAN11G3594 Fragaria x ananassa HOM05D000169 ORTHO05D007693 9.2e-15 83.2 66 60.6
TAR627G0736 Trochodendron aralioides HOM05D000169 ORTHO05D007693 9.2e-15 83.2 66 60.6
RcHm_v2.0_Chr5g0016071 Rosa chinensis HOM05D000169 ORTHO05D007693 1.2e-14 82.8 66 60.6
Cfa000807 Carpinus fangiana HOM05D000169 ORTHO05D007693 1.6e-14 82.4 66 60.6
CDE06G2571 Ceratophyllum demersum HOM05D000169 ORTHO05D007693 2.0e-14 82.0 62 62.9
Sc10g0005430 Simmondsia chinensis HOM05D000169 ORTHO05D007693 2.0e-14 82.0 69 60.9
CiPaw.10G109200 Carya illinoinensis HOM05D000169 ORTHO05D007693 3.5e-14 81.3 66 62.1
Haze_05866 Corylus avellana HOM05D000169 ORTHO05D007693 3.5e-14 81.3 66 60.6
Eucgr.D00174 Eucalyptus grandis HOM05D000169 ORTHO05D007693 3.5e-14 81.3 66 59.1
Sed0014236 Sechium edule HOM05D000169 ORTHO05D007693 3.5e-14 81.3 66 59.1
Lalb_Chr20g0120061 Lupinus albus HOM05D000169 ORTHO05D007693 4.6e-14 80.9 66 62.1
C05p29540 Brassica napus HOM05D000169 ORTHO05D007693 5.9e-14 80.5 66 54.5
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 7.8e-14 80.1 66 60.6
Lsat_1_v5_gn_7_27381 Lactuca sativa HOM05D000169 ORTHO05D007693 7.8e-14 80.1 63 65.1
BolC5t31685H Brassica oleracea HOM05D000169 ORTHO05D007693 1.0e-13 79.7 66 53.0
MD10G1252900 Malus domestica HOM05D000169 ORTHO05D007693 1.0e-13 79.7 66 57.6
Prupe.4G090600 Prunus persica HOM05D000169 ORTHO05D007693 1.0e-13 79.7 66 57.6
GSVIVG01021658001 Vitis vinifera HOM05D000169 ORTHO05D007693 1.0e-13 79.7 66 62.1
Aa31LG6G11770 Aethionema arabicum HOM05D000169 ORTHO05D007693 1.3e-13 79.3 66 54.5
A09p35920 Brassica napus HOM05D000169 ORTHO05D007693 1.3e-13 79.3 66 53.0
BraA09t39117Z Brassica rapa HOM05D000169 ORTHO05D007693 1.3e-13 79.3 66 53.0
Lj6g0025648 Lotus japonicus HOM05D000169 ORTHO05D007693 2.3e-13 78.6 68 58.8
THA.LOC104814347 Tarenaya hassleriana HOM05D000356 ORTHO05D007693 2.3e-13 78.6 66 59.1
BcaB07g32664 Brassica carinata HOM05D000356 ORTHO05D007693 2.9e-13 78.2 66 53.0
BcaB07g32688 Brassica carinata HOM05D000169 ORTHO05D007693 2.9e-13 78.2 66 53.0
Gorai.009G115300 Gossypium raimondii HOM05D000169 ORTHO05D007693 3.9e-13 77.8 66 60.6
HanXRQChr04g0116481 Helianthus annuus HOM05D000169 ORTHO05D007693 3.9e-13 77.8 63 66.7
Psat1g167440 Pisum sativum HOM05D000169 ORTHO05D007693 3.9e-13 77.8 63 61.9
TPR.G26348 Trifolium pratense HOM05D000169 ORTHO05D007693 3.9e-13 77.8 60 65.0
AT1G30520 Arabidopsis thaliana HOM05D000169 ORTHO05D007693 5.0e-13 77.4 66 53.0
COL.COLO4_26836 Corchorus olitorius HOM05D000169 ORTHO05D007693 5.0e-13 77.4 67 58.2
Sp1g26370 Schrenkiella parvula HOM05D000169 ORTHO05D007693 5.0e-13 77.4 66 53.0
ECA236G2888 Erigeron canadensis HOM05D000169 ORTHO05D007693 6.6e-13 77.0 60 65.0
Hund19369 Selenicereus undatus HOM05D000169 ORTHO05D007693 6.6e-13 77.0 66 59.1
Gohir.D05G111000 Gossypium hirsutum HOM05D000169 ORTHO05D007693 8.6e-13 76.6 66 59.1
Medtr2g030240 Medicago truncatula HOM05D000356 ORTHO05D007693 8.6e-13 76.6 60 65.0
Nn4g26677 Nelumbo nucifera HOM05D000356 ORTHO05D007693 1.1e-12 76.3 66 62.1
AL1G44564 Arabidopsis lyrata HOM05D000169 ORTHO05D007693 1.9e-12 75.5 66 50.0
Carub.0001s2876 Capsella rubella HOM05D000169 ORTHO05D007693 1.9e-12 75.5 66 53.0
CiPaw.09G141800 Carya illinoinensis HOM05D000169 ORTHO05D007693 1.9e-12 75.5 66 56.1
Ah.04g153410 Amaranthus hybridus HOM05D000169 ORTHO05D007693 2.5e-12 75.1 61 63.9
Phvul.006G128100 Phaseolus vulgaris HOM05D000169 ORTHO05D007693 2.5e-12 75.1 66 60.6
QL05p062500 Quercus lobata HOM05D000169 ORTHO05D007693 2.5e-12 75.1 64 59.4
CsaV3_6G052370 Cucumis sativus L. HOM05D000169 ORTHO05D007693 3.3e-12 74.7 66 54.5
Glyma.15G130500 Glycine max HOM05D000169 ORTHO05D007693 4.3e-12 74.3 66 59.1
Duzib235G0404 Durio zibethinus HOM05D000169 ORTHO05D007693 9.5e-12 73.2 66 59.1
Ca_00844_v3 Cicer arietinum L. HOM05D000169 ORTHO05D007693 1.2e-11 72.8 60 61.7
VMungo0540G1641 Vigna mungo HOM05D000169 ORTHO05D007693 1.2e-11 72.8 66 57.6
ATR0165G033 Amborella trichopoda HOM05D000169 ORTHO05D007693 2.1e-11 72.0 63 60.3
PSO675G5523 Papaver somniferum HOM05D000169 ORTHO05D007693 2.1e-11 72.0 59 57.6
Glyma.09G024500 Glycine max HOM05D000169 ORTHO05D007693 4.7e-11 70.9 66 56.1
unitig_21.g20626 Utricularia gibba HOM05D000169 ORTHO05D007693 1.0e-10 69.7 66 50.0
EL10Ac1g01132 Beta vulgaris HOM05D000169 ORTHO05D007693 4.0e-10 67.8 60 56.7
arahy.Tifrunner.gnm1.ann1.D0AYNK Arachis hypogaea HOM05D000169 ORTHO05D007693 6.8e-10 67.0 64 54.7
Aqoxy1G00111 Aquilegia oxysepala HOM05D000356 ORTHO05D007693 1.2e-09 66.2 59 55.9
MBI18_g11292_MAGBIO Magnolia biondii HOM05D000169 ORTHO05D007693 1.5e-09 65.9 65 55.4
arahy.Tifrunner.gnm1.ann1.T5Y52R Arachis hypogaea HOM05D000169 ORTHO05D007693 3.4e-09 64.7 64 53.1
AUR62029373 Chenopodium quinoa HOM05D000169 ORTHO05D007693 1.3e-08 62.8 62 54.8
MD05G1272800 Malus domestica HOM05D000169 ORTHO05D007693 2.4e-07 58.5 51 56.9
CANSAT35G1370 Cannabis sativa HOM05D000169 ORTHO05D007693 3.2e-07 58.2 68 48.5


User provided reference genes

Program Settings