Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 7.4e-164 580.5 296 100.0
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 9.7e-164 580.1 296 99.7
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 1.4e-162 576.2 296 99.3
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 5.2e-149 531.2 296 89.5
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 7.0e-146 520.8 296 90.2
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 4.5e-145 518.1 281 94.0
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 7.7e-145 517.3 296 89.5
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 8.3e-131 470.7 296 80.4
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 2.4e-130 469.2 296 80.1
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 9.2e-130 467.2 295 80.0
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 1.2e-129 466.8 295 80.3
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 3.5e-129 465.3 300 79.0
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 1.7e-128 463.0 296 76.7
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 1.7e-128 463.0 296 76.7
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 2.3e-128 462.6 294 79.6
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 2.3e-128 462.6 294 79.3
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 2.9e-128 462.2 294 79.6
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 1.1e-127 460.3 294 78.9
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 3.3e-127 458.8 294 77.6
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 3.3e-127 458.8 294 78.6
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 4.3e-127 458.4 295 77.3
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 4.3e-127 458.4 295 76.3
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 9.5e-127 457.2 294 76.9
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 2.1e-126 456.1 302 77.5
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.8e-126 455.7 296 77.4
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.8e-126 455.7 296 77.4
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 4.7e-126 454.9 295 75.9
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 8.0e-126 454.1 302 77.2
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 1.0e-125 453.8 295 75.3
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.4e-125 453.4 294 77.9
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 1.4e-125 453.4 294 78.2
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 1.8e-125 453.0 294 77.2
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 2.3e-125 452.6 294 77.2
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 4.0e-125 451.8 294 76.9
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 4.0e-125 451.8 294 77.6
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 4.0e-125 451.8 294 78.6
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 5.2e-125 451.4 294 76.2
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 5.2e-125 451.4 296 76.4
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 5.2e-125 451.4 294 77.9
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 6.8e-125 451.1 294 77.6
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 8.9e-125 450.7 295 74.6
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 1.5e-124 449.9 296 75.7
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 2.0e-124 449.5 294 75.9
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 2.6e-124 449.1 295 76.6
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 3.4e-124 448.7 296 77.0
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 3.4e-124 448.7 295 74.2
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 5.7e-124 448.0 294 76.5
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 9.8e-124 447.2 294 76.9
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 1.3e-123 446.8 294 76.9
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 4.9e-123 444.9 295 75.9
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 6.4e-123 444.5 294 75.5
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 8.3e-123 444.1 294 76.2
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.8e-122 443.0 313 71.2
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 4.1e-122 441.8 294 75.9
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 7.0e-122 441.0 294 74.5
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 1.2e-121 440.3 294 77.2
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.2e-121 440.3 313 70.6
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 3.5e-121 438.7 293 74.7
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 4.6e-121 438.3 294 73.8
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 4.6e-121 438.3 294 74.1
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 5.9e-121 438.0 338 67.5
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 5.9e-121 438.0 294 74.1
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.3e-120 436.8 282 77.0
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 1.3e-120 436.8 294 75.2
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 2.3e-120 436.0 294 73.5
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 3.9e-120 435.3 295 74.2
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 2.5e-119 432.6 294 74.8
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.2e-118 430.3 313 69.6
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 2.8e-118 429.1 296 72.3
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 4.7e-118 428.3 289 73.0
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 6.2e-118 427.9 282 77.0
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 8.0e-118 427.6 295 74.9
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 8.0e-118 427.6 295 73.9
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 2.3e-117 426.0 293 72.7
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 4.0e-117 425.2 294 71.8
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 8.9e-117 424.1 293 72.4
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 8.9e-117 424.1 294 70.7
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 8.9e-117 424.1 296 72.6
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 1.2e-116 423.7 296 72.0
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 1.5e-116 423.3 296 73.0
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 2.0e-116 422.9 296 72.3
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 2.0e-116 422.9 294 70.7
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 2.6e-116 422.5 294 70.7
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 2.6e-116 422.5 296 71.3
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 9.8e-116 420.6 294 72.8
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 1.7e-115 419.9 296 71.6
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 1.7e-115 419.9 296 71.3
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 1.7e-115 419.9 295 69.8
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 2.2e-115 419.5 294 71.4
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 6.4e-115 417.9 295 69.5
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 6.4e-115 417.9 296 70.3
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 3.2e-114 415.6 294 71.8
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 4.1e-114 415.2 296 70.9
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 4.1e-114 415.2 296 70.9
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 1.2e-113 413.7 296 70.6
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 3.5e-113 412.1 295 70.8
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 4.6e-113 411.8 295 70.5
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 4.6e-113 411.8 295 70.8
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 4.6e-113 411.8 293 71.0
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 1.0e-112 410.6 276 74.6
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 1.7e-112 409.8 285 71.6
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 1.7e-112 409.8 296 70.3
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 1.7e-112 409.8 293 70.3
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 2.5e-111 406.0 282 71.3
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 3.1e-109 399.1 296 69.3
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 1.5e-108 396.7 266 74.8
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 4.4e-108 395.2 251 78.9
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 6.6e-104 381.3 295 65.4
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 8.6e-104 380.9 295 68.8
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 2.9e-99 365.9 318 60.7
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 4.1e-98 362.1 217 82.9
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 5.1e-96 355.1 291 60.1
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 6.2e-94 348.2 223 78.9
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 3.8e-91 339.0 294 59.5
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 1.9e-90 336.7 294 60.2
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 1.2e-89 334.0 214 74.8
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 1.1e-87 327.4 294 57.8
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 2.8e-86 322.8 223 73.5
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 1.1e-85 320.9 294 55.1
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 4.0e-85 318.9 295 58.0
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 5.3e-85 318.5 271 60.9
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 1.5e-84 317.0 223 70.9
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 2.0e-84 316.6 290 56.2
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 5.4e-82 308.5 262 58.4
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 1.1e-79 300.8 219 67.1
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 9.0e-77 291.2 277 58.8
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 1.0e-72 277.7 256 56.6
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 1.0e-67 261.2 252 55.6
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 1.0e-64 251.1 177 72.3
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 2.4e-61 240.0 150 80.0
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.2e-60 237.7 162 71.0
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 5.9e-60 235.3 177 63.8
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.6e-54 217.2 202 57.9
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 6.5e-51 205.3 149 64.4
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 1.9e-50 203.8 143 65.0
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.0e-47 193.7 135 69.6
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 7.7e-44 181.8 182 56.6
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 1.1e-42 177.9 134 68.7
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 3.9e-40 169.5 266 35.3
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 2.9e-35 153.3 123 65.9
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 1.4e-32 144.4 304 33.9
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 1.2e-31 141.4 132 59.8
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.3e-30 137.9 107 65.4
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 4.1e-29 132.9 100 61.0
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 3.4e-23 113.2 270 28.1
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 1.3e-22 111.3 66 84.8
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 1.4e-21 107.8 116 54.3
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 1.2e-20 104.8 81 63.0
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 5.9e-20 102.4 128 50.0
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 3.0e-16 90.1 96 55.2
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 7.5e-15 85.5 96 53.1
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 7.8e-12 75.5 91 48.4
SGA_v2.0_scaffold298G47630 Striga asiatica HOM05D004415 ORTHO05D005198 4.7e-09 66.2 60 58.3
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 6.8e-08 62.4 49 67.3
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 1.3e-06 58.2 44 61.4
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.3e-06 58.2 54 53.7


User provided reference genes

Program Settings