Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 0.0e+00 1152.5 571 100.0
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 0.0e+00 1144.0 554 100.0
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 0.0e+00 1136.3 571 98.2
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 0.0e+00 1075.1 569 92.8
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 7.8e-312 1073.2 567 90.5
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.1e-309 1065.8 567 91.0
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 1.7e-305 1052.0 571 89.0
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 5.6e-285 983.8 571 82.1
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.8e-281 971.1 571 81.3
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 4.6e-279 964.1 571 80.4
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 1.8e-275 952.2 571 79.2
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 3.1e-275 951.4 554 80.5
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 4.0e-275 951.0 554 79.4
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 6.9e-275 950.3 571 79.3
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 2.0e-274 948.7 553 80.5
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 7.6e-274 946.8 554 80.7
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 4.9e-273 944.1 554 80.0
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 6.4e-273 943.7 554 80.0
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 6.4e-273 943.7 554 80.5
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 8.4e-273 943.3 554 80.3
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.4e-272 942.6 554 79.8
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 1.4e-272 942.6 554 79.6
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 1.9e-272 942.2 571 77.9
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.4e-272 941.8 554 80.0
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 3.2e-272 941.4 568 78.3
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 5.4e-272 940.6 571 77.6
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 7.1e-272 940.3 570 77.2
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 1.2e-271 939.5 571 77.4
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 1.6e-271 939.1 571 77.8
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 1.6e-271 939.1 571 77.8
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 1.6e-271 939.1 571 77.6
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 2.1e-271 938.7 567 78.0
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 6.0e-271 937.2 534 81.8
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 2.3e-270 935.3 554 79.6
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 2.3e-270 935.3 570 77.2
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 2.3e-270 935.3 571 77.8
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 3.0e-270 934.9 571 77.6
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 3.9e-270 934.5 554 79.4
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 3.9e-270 934.5 571 77.2
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 6.7e-270 933.7 554 79.6
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 6.7e-270 933.7 554 80.1
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.9e-269 932.2 552 79.2
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 2.5e-269 931.8 571 77.6
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 4.3e-269 931.0 571 77.2
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 5.6e-269 930.6 553 78.8
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 9.6e-269 929.9 554 78.7
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 1.3e-268 929.5 554 78.9
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 1.3e-268 929.5 554 79.1
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 1.3e-268 929.5 571 77.1
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.6e-268 929.1 552 78.8
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 3.7e-268 927.9 554 78.5
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 4.8e-268 927.5 571 76.5
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 6.2e-268 927.2 553 77.8
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 1.1e-267 926.4 554 79.4
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 1.4e-267 926.0 554 79.2
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 1.8e-267 925.6 571 76.2
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 1.8e-267 925.6 571 76.7
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 1.8e-267 925.6 571 76.4
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 4.0e-267 924.5 554 78.3
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 9.0e-267 923.3 554 78.7
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 1.2e-266 922.9 554 78.2
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 2.0e-266 922.2 571 76.5
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 2.0e-266 922.2 568 76.6
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 4.5e-266 921.0 554 78.0
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 5.8e-266 920.6 572 78.3
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 7.6e-266 920.2 571 76.0
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 7.6e-266 920.2 554 78.5
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 7.6e-266 920.2 554 78.5
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 3.8e-265 917.9 571 76.4
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 8.4e-265 916.8 571 76.5
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 1.1e-264 916.4 571 79.0
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 1.4e-264 916.0 571 76.2
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 5.5e-264 914.1 571 76.2
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 9.3e-264 913.3 571 76.0
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 1.2e-263 912.9 571 75.1
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 3.5e-263 911.4 554 78.0
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 1.0e-262 909.8 571 74.8
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 3.9e-262 907.9 554 77.8
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 1.1e-261 906.4 571 75.5
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 1.1e-261 906.4 571 74.8
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 1.9e-261 905.6 554 76.7
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 1.9e-261 905.6 554 76.7
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 1.9e-261 905.6 554 76.7
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.9e-261 905.6 572 75.3
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 1.9e-261 905.6 554 77.3
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 2.5e-261 905.2 552 76.4
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.5e-261 905.2 570 75.6
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 3.3e-261 904.8 573 75.2
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 5.6e-261 904.0 554 75.6
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 5.6e-261 904.0 567 74.3
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 7.4e-261 903.7 568 75.5
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 1.3e-260 902.9 554 76.4
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 1.6e-260 902.5 554 76.7
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 1.6e-260 902.5 571 74.8
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 3.7e-260 901.4 554 76.5
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 3.7e-260 901.4 554 76.5
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 3.7e-260 901.4 554 76.5
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 4.8e-260 901.0 554 76.4
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 4.8e-260 901.0 554 75.6
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 4.8e-260 901.0 574 75.1
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 6.2e-260 900.6 554 76.5
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 8.2e-260 900.2 554 76.2
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.1e-259 899.8 554 76.2
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 1.8e-259 899.0 554 76.2
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 3.1e-259 898.3 571 74.4
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 4.0e-259 897.9 571 74.3
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 5.3e-259 897.5 554 75.6
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 5.3e-259 897.5 554 75.8
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 6.9e-259 897.1 554 76.0
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.2e-258 896.3 554 76.4
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 2.6e-258 895.2 554 76.0
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 4.5e-258 894.4 542 77.1
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 5.8e-258 894.0 554 76.4
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 7.6e-258 893.6 554 74.9
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 8.4e-257 890.2 554 75.8
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 4.2e-256 887.9 553 75.4
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 5.5e-256 887.5 554 75.6
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 5.5e-256 887.5 554 74.9
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 3.5e-255 884.8 541 76.2
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 3.5e-255 884.8 554 75.3
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.3e-254 882.9 541 76.3
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 3.9e-254 881.3 554 75.1
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 3.9e-254 881.3 571 73.9
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 1.5e-253 879.4 554 74.7
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 3.3e-253 878.2 541 75.0
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 2.2e-252 875.5 554 74.7
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 2.4e-251 872.1 559 73.7
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 9.4e-248 860.1 556 75.0
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.4e-238 829.7 554 70.4
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 2.3e-238 828.9 526 74.1
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 3.9e-238 828.2 576 68.8
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 4.1e-235 818.1 554 70.8
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 2.0e-234 815.8 553 70.0
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 2.6e-234 815.5 535 69.9
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 6.1e-231 804.3 554 68.1
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 6.1e-231 804.3 554 68.8
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 2.0e-221 772.7 554 67.0
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 1.1e-219 766.9 554 68.2
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 1.4e-219 766.5 456 76.8
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.1e-203 713.8 425 77.9
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 1.8e-198 696.4 421 78.1
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 5.2e-182 641.7 373 78.6
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.3e-180 637.1 554 58.5
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 1.1e-176 624.0 570 56.0
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.7e-172 610.1 540 53.9
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 3.9e-161 572.4 488 53.1
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 2.2e-156 556.6 528 50.8
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.2e-154 550.8 317 77.9
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 8.7e-153 544.7 420 65.5
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.3e-145 520.8 418 56.7
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 6.1e-138 495.4 280 77.9
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 1.7e-132 477.2 304 74.0
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.3e-129 466.8 570 48.1
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.1e-126 458.0 571 46.6
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 6.1e-114 415.6 456 50.7
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 1.6e-82 311.2 491 36.3
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 3.3e-75 287.0 201 68.2
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 7.1e-70 269.2 551 34.8
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 1.8e-57 228.0 166 64.5
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 1.2e-56 225.3 135 75.6
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 2.9e-55 220.7 135 74.1
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 3.0e-44 184.1 107 79.4
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.5e-43 181.8 133 66.9
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 8.1e-42 176.0 117 65.8
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.4e-41 175.3 128 67.2
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 2.2e-39 167.9 319 32.0
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 6.4e-39 166.4 164 54.3
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 2.4e-38 164.5 164 54.3
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 4.2e-38 163.7 164 54.3
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 4.6e-37 160.2 164 53.7
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 6.9e-33 146.4 497 26.8
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 6.7e-28 129.8 94 66.0
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 3.3e-27 127.5 97 59.8
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 1.3e-26 125.6 213 37.1
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 6.3e-26 123.2 75 69.3
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 9.0e-25 119.4 67 76.1
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 2.8e-18 97.8 184 34.8
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 2.4e-17 94.7 164 39.0
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 1.7e-15 88.6 53 69.8
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 5.7e-11 73.6 46 63.0
Cc08_g01180 Coffea canephora HOM05D000597 ORTHO05D006307 9.4e-06 56.2 94 33.0


User provided reference genes

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