Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 1.5e-253 879.0 437 100.0
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 1.1e-245 852.8 437 97.3
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 1.3e-244 849.4 437 96.3
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 7.0e-235 817.0 437 92.0
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 6.5e-225 783.9 437 87.6
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 1.2e-223 779.6 437 87.2
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 4.2e-216 754.6 439 84.3
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 2.5e-184 649.0 447 72.3
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 1.6e-183 646.4 438 71.7
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 9.9e-181 637.1 447 70.5
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 4.9e-180 634.8 441 69.8
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 1.3e-177 626.7 444 70.0
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 5.1e-177 624.8 438 70.3
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.5e-176 623.2 441 69.6
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 1.9e-176 622.9 448 71.4
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 5.6e-176 621.3 442 70.6
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 1.8e-174 616.3 448 68.8
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 3.4e-173 612.1 440 70.9
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 8.4e-172 607.4 448 68.5
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 8.4e-172 607.4 445 69.0
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 1.9e-171 606.3 440 68.0
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 1.2e-170 603.6 447 68.5
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 4.6e-170 601.7 445 66.7
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 1.0e-169 600.5 447 68.7
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 1.0e-169 600.5 443 67.5
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 3.9e-169 598.6 446 68.8
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 6.6e-169 597.8 443 68.6
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.1e-168 597.0 447 68.2
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 7.3e-168 594.3 441 67.3
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 3.6e-167 592.0 450 66.4
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 8.1e-167 590.9 441 67.3
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.1e-166 590.5 447 67.6
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 1.8e-166 589.7 446 66.1
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 9.0e-166 587.4 447 65.5
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 1.5e-165 586.6 448 67.0
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 2.0e-165 586.3 443 67.0
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 5.8e-165 584.7 438 67.8
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 7.6e-165 584.3 448 67.2
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 9.9e-165 583.9 435 66.4
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 2.9e-164 582.4 445 65.2
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 6.4e-164 581.3 443 65.9
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 8.4e-164 580.9 436 67.2
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 1.4e-163 580.1 447 64.2
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 2.4e-163 579.3 431 67.7
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 3.2e-163 578.9 447 65.3
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 4.2e-163 578.6 429 67.4
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 4.2e-163 578.6 443 66.6
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 7.1e-163 577.8 436 67.0
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 9.3e-163 577.4 448 66.5
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 6.0e-162 574.7 449 64.4
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.5e-160 569.3 451 64.7
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 1.3e-159 567.0 422 65.4
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 2.8e-159 565.8 447 64.7
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.8e-159 565.8 444 65.1
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.8e-159 565.8 444 65.1
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 6.2e-159 564.7 448 64.5
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 6.2e-159 564.7 451 64.3
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 1.1e-158 563.9 435 63.0
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 1.1e-158 563.9 443 63.7
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 2.4e-158 562.8 411 68.4
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.1e-158 562.4 444 64.4
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 4.0e-158 562.0 426 65.5
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 5.3e-158 561.6 434 64.3
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 9.0e-158 560.8 433 63.5
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 9.0e-158 560.8 441 64.6
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 2.6e-157 559.3 369 73.2
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 4.5e-157 558.5 442 63.1
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 5.8e-157 558.1 432 63.2
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 5.8e-157 558.1 433 62.6
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 4.9e-156 555.1 446 62.1
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 8.4e-156 554.3 407 66.6
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 1.1e-155 553.9 437 63.8
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 5.4e-155 551.6 440 63.0
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 5.4e-155 551.6 440 63.0
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 7.9e-154 547.7 370 69.7
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 1.0e-153 547.4 430 65.1
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 5.1e-153 545.0 430 63.0
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 7.4e-152 541.2 400 68.0
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 1.6e-151 540.0 430 62.6
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 6.2e-151 538.1 412 64.1
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 4.0e-150 535.4 340 75.6
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 9.0e-150 534.3 464 59.1
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 9.0e-150 534.3 448 62.1
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 2.0e-149 533.1 402 65.7
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 5.8e-149 531.6 441 61.5
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.3e-148 530.4 454 61.0
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 1.7e-148 530.0 433 61.2
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 5.5e-147 525.0 430 63.5
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 5.5e-147 525.0 430 63.5
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 1.6e-146 523.5 425 61.4
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 2.1e-146 523.1 428 62.6
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 6.0e-146 521.5 440 60.5
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 7.9e-146 521.2 439 63.1
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 5.1e-145 518.5 441 61.9
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 1.5e-144 516.9 342 71.3
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 2.5e-144 516.2 428 60.7
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 2.5e-144 516.2 435 59.1
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 2.1e-143 513.1 443 60.9
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 8.2e-143 511.1 440 61.6
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 1.8e-142 510.0 437 61.1
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 2.4e-142 509.6 435 60.5
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 1.5e-141 506.9 442 60.9
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 2.0e-141 506.5 434 61.8
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 2.2e-140 503.1 437 60.6
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 2.2e-140 503.1 441 60.5
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.2e-140 503.1 446 59.4
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 3.8e-140 502.3 439 60.4
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.1e-139 500.7 372 64.5
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 1.9e-139 500.0 446 60.5
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.6e-138 496.9 446 58.7
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 7.9e-138 494.6 434 61.3
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 1.0e-137 494.2 374 62.8
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 2.3e-137 493.0 445 60.4
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 2.3e-137 493.0 445 60.4
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 2.3e-137 493.0 350 66.6
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 5.1e-137 491.9 445 60.2
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 5.1e-137 491.9 443 55.8
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 5.7e-136 488.4 440 59.8
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 4.8e-135 485.3 443 55.1
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.5e-133 480.3 350 66.6
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 2.9e-132 476.1 361 65.7
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 1.6e-130 470.3 407 56.5
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.0e-129 467.6 350 66.0
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 5.0e-124 448.7 438 56.2
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 8.5e-124 448.0 319 67.7
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 4.8e-119 432.2 323 64.1
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 3.5e-109 399.4 357 60.5
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 8.5e-108 394.8 278 68.7
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 8.5e-108 394.8 278 68.7
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 4.0e-105 386.0 378 55.8
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 7.0e-94 348.6 426 46.5
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 2.9e-92 343.2 376 48.7
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 1.6e-77 294.3 233 61.4
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 6.6e-68 262.3 190 66.3
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 3.4e-64 250.0 370 43.2
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 5.4e-62 242.7 160 70.6
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.1e-61 240.7 253 52.2
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 2.7e-61 240.4 164 70.1
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 3.9e-52 209.9 257 48.2
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 5.3e-41 172.9 107 74.8
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 9.3e-38 162.2 146 54.8
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 1.1e-27 128.6 138 51.4
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 1.1e-27 128.6 95 61.1
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 1.2e-24 118.6 110 58.2
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 1.7e-23 114.8 111 55.9
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 2.8e-10 70.9 51 62.7
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 6.9e-09 66.2 118 39.8


User provided reference genes

Program Settings