Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g018210 Solanum pennellii HOM05D002665 ORTHO05D002991 3.6e-97 358.2 179 100.0
PGSC0003DMG400029563 Solanum tuberosum HOM05D002665 ORTHO05D002991 4.4e-34 148.7 105 72.4
Solyc08g074290.3 Solanum lycopersicum HOM05D002665 ORTHO05D002991 7.4e-26 121.3 153 50.3
Sopen08g022940 Solanum pennellii HOM05D002665 ORTHO05D002991 1.3e-25 120.6 153 50.3
Manes.16G136900 Manihot esculenta HOM05D002665 ORTHO05D002991 4.2e-21 105.5 98 54.1
CAN.G195.4 Capsicum annuum HOM05D002665 ORTHO05D002991 7.2e-21 104.8 153 44.4
Nitab4.5_0006603g0020 Nicotiana tabacum HOM05D002665 ORTHO05D002991 4.7e-20 102.1 152 41.4
Nitab4.5_0000919g0110 Nicotiana tabacum HOM05D002665 ORTHO05D002991 5.2e-19 98.6 152 40.1
Solyc05g010750.3 Solanum lycopersicum HOM05D002665 ORTHO05D002991 5.2e-19 98.6 72 70.8
Peaxi162Scf00045g01455 Petunia axillaris HOM05D002665 ORTHO05D002991 5.4e-16 88.6 153 35.3
Migut.E01410 Erythranthe guttata HOM05D002665 ORTHO05D002991 1.0e-14 84.3 157 36.3
CAN.G940.9 Capsicum annuum HOM05D002665 ORTHO05D002991 4.2e-13 79.0 153 33.3
Cc00_g12740 Coffea canephora HOM05D002665 ORTHO05D002991 4.2e-13 79.0 153 33.3
FAN15G1304 Fragaria x ananassa HOM05D002665 ORTHO05D002991 4.7e-12 75.5 138 34.1
Peaxi162Scf00213g00118 Petunia axillaris HOM05D002665 ORTHO05D002991 1.8e-11 73.6 184 31.0
MSTRG.1740 Avicennia marina HOM05D002665 ORTHO05D002991 2.3e-11 73.2 152 33.6
Os08g0519400 Oryza sativa ssp. japonica HOM05D002665 ORTHO05D002991 2.3e-11 73.2 86 43.0
COL.COLO4_18617 Corchorus olitorius HOM05D002665 ORTHO05D002991 3.0e-11 72.8 153 33.3
Potri.006G276900 Populus trichocarpa HOM05D002665 ORTHO05D002991 3.0e-11 72.8 145 34.5
Sabra18G0001800 Salix brachista HOM05D002665 ORTHO05D002991 3.0e-11 72.8 153 33.3
Nn2g12753 Nelumbo nucifera HOM05D002665 ORTHO05D002991 4.0e-11 72.4 149 32.9
Potri.018G003700 Populus trichocarpa HOM05D002665 ORTHO05D002991 4.0e-11 72.4 153 32.7
TAR383G0485 Trochodendron aralioides HOM05D002665 ORTHO05D002991 5.2e-11 72.0 130 36.2
Migut.A00460 Erythranthe guttata HOM05D002665 ORTHO05D002991 8.8e-11 71.2 72 50.0
Prupe.1G455000 Prunus persica HOM05D002665 ORTHO05D002991 8.8e-11 71.2 153 32.0
MSTRG.11823 Avicennia marina HOM05D002665 ORTHO05D002991 1.2e-10 70.9 150 34.0
EL10Ac2g03706 Beta vulgaris HOM05D002665 ORTHO05D002991 2.0e-10 70.1 147 32.7
Haze_21811 Corylus avellana HOM05D002665 ORTHO05D002991 2.0e-10 70.1 155 33.5
PGR044G2224 Punica granatum HOM05D002665 ORTHO05D002991 2.0e-10 70.1 153 33.3
TWI34G1233 Tripterygium wilfordii HOM05D002665 ORTHO05D002991 4.4e-10 68.9 149 33.6
Cfa013322 Carpinus fangiana HOM05D002665 ORTHO05D002991 5.7e-10 68.6 149 32.9
Zm00001eb035730 Zea mays HOM05D002665 ORTHO05D002991 7.5e-10 68.2 148 31.8
CiPaw.07G208800 Carya illinoinensis HOM05D002665 ORTHO05D002991 1.3e-09 67.4 72 47.2
ECA240G1424 Erigeron canadensis HOM05D002665 ORTHO05D002991 1.3e-09 67.4 149 34.9
FAN27G0789 Fragaria x ananassa HOM05D002665 ORTHO05D002991 1.3e-09 67.4 154 30.5
Oeu026032.1 Olea europaea HOM05D002665 ORTHO05D002991 1.3e-09 67.4 160 31.2
GSVIVG01035555001 Vitis vinifera HOM05D002665 ORTHO05D002991 1.3e-09 67.4 148 31.8
Duzib168G2001 Durio zibethinus HOM05D002665 ORTHO05D002991 1.7e-09 67.0 149 32.9
Oeu059295.1 Olea europaea HOM05D002665 ORTHO05D002991 1.7e-09 67.0 154 31.2
SGA_v2.0_scaffold27G11647 Striga asiatica HOM05D002665 ORTHO05D002991 2.2e-09 66.6 167 31.1
Cpa.g.sc328.1 Carica papaya HOM05D002665 ORTHO05D002991 2.8e-09 66.2 89 38.2
Manes.03G002000 Manihot esculenta HOM05D002665 ORTHO05D002991 2.8e-09 66.2 149 34.2
Ah.11g044010 Amaranthus hybridus HOM05D002665 ORTHO05D002991 3.7e-09 65.9 149 31.5
Lj1g0017245 Lotus japonicus HOM05D002665 ORTHO05D002991 3.7e-09 65.9 73 47.9
Solyc08g006030.4 Solanum lycopersicum HOM05D002665 ORTHO05D002991 3.7e-09 65.9 153 35.3
Nitab4.5_0012989g0010 Nicotiana tabacum HOM05D002665 ORTHO05D002991 4.9e-09 65.5 153 32.7
Zm00001eb174670 Zea mays HOM05D002665 ORTHO05D002991 8.3e-09 64.7 153 32.7
FAN20G2144 Fragaria x ananassa HOM05D002665 ORTHO05D002991 1.1e-08 64.3 190 27.4
MD15G1100200 Malus domestica HOM05D002665 ORTHO05D002991 1.1e-08 64.3 71 47.9
PGSC0003DMG400014854 Solanum tuberosum HOM05D002665 ORTHO05D002991 1.1e-08 64.3 153 32.7
BcaC09g51913 Brassica carinata HOM05D002665 ORTHO05D002991 1.4e-08 63.9 70 44.3
BolC1t00751H Brassica oleracea HOM05D002665 ORTHO05D002991 1.4e-08 63.9 70 44.3
Ca_15631_v3 Cicer arietinum L. HOM05D002665 ORTHO05D002991 1.4e-08 63.9 102 39.2
Aa31LG2G19020 Aethionema arabicum HOM05D002665 ORTHO05D002991 1.8e-08 63.5 69 42.0
Nn8g40895 Nelumbo nucifera HOM05D002665 ORTHO05D002991 1.8e-08 63.5 153 28.8
Sopen08g002000 Solanum pennellii HOM05D002665 ORTHO05D002991 1.8e-08 63.5 153 34.6
Lj8C424T3 Lonicera japonica HOM05D002665 ORTHO05D002991 2.4e-08 63.2 149 31.5
Lj8C430T1 Lonicera japonica HOM05D002665 ORTHO05D002991 2.4e-08 63.2 149 31.5
TWI32G0516 Tripterygium wilfordii HOM05D002665 ORTHO05D002991 2.4e-08 63.2 75 45.3
A01p06970 Brassica napus HOM05D002665 ORTHO05D002991 3.1e-08 62.8 70 42.9
BraA01t00645Z Brassica rapa HOM05D002665 ORTHO05D002991 3.1e-08 62.8 70 42.9
Eucgr.C02115 Eucalyptus grandis HOM05D002665 ORTHO05D002991 3.1e-08 62.8 153 30.1
Lsat_1_v5_gn_3_24601 Lactuca sativa HOM05D002665 ORTHO05D002991 3.1e-08 62.8 150 28.7
Hund03271 Selenicereus undatus HOM05D002665 ORTHO05D002991 3.1e-08 62.8 149 28.9
Dinv36353 Davidia involucrata HOM05D002665 ORTHO05D002991 4.1e-08 62.4 44 59.1
TWI63G0924 Tripterygium wilfordii HOM05D002665 ORTHO05D002991 4.1e-08 62.4 89 38.2
Ciclev10008249m.g Citrus clementina HOM05D002665 ORTHO05D002991 5.4e-08 62.0 149 30.9
CiPaw.08G022000 Carya illinoinensis HOM05D002665 ORTHO05D002991 7.0e-08 61.6 67 47.8
Psat5g023040 Pisum sativum HOM05D002665 ORTHO05D002991 7.0e-08 61.6 67 47.8
VMungo1309G0855 Vigna mungo HOM05D002665 ORTHO05D002991 7.0e-08 61.6 150 29.3
Dinv26437 Davidia involucrata HOM05D002665 ORTHO05D002991 9.1e-08 61.2 81 35.8
Os09g0497700 Oryza sativa ssp. japonica HOM05D002665 ORTHO05D002991 9.1e-08 61.2 148 30.4
SalBow8G3867 Salvia bowleyana HOM05D002665 ORTHO05D002991 9.1e-08 61.2 135 35.6
AL7G20740 Arabidopsis lyrata HOM05D002665 ORTHO05D002991 1.2e-07 60.8 70 41.4
Carub.0007s0922 Capsella rubella HOM05D002665 ORTHO05D002991 1.2e-07 60.8 70 41.4
MD08G1121400 Malus domestica HOM05D002665 ORTHO05D002991 1.2e-07 60.8 62 53.2
AUR62038745 Chenopodium quinoa HOM05D002665 ORTHO05D002991 1.6e-07 60.5 147 29.9
Hund19391 Selenicereus undatus HOM05D002665 ORTHO05D002991 1.6e-07 60.5 85 36.5
Atru.chr7.2676 Acer truncatum HOM05D002665 ORTHO05D002991 2.0e-07 60.1 62 48.4
C01p07700 Brassica napus HOM05D002665 ORTHO05D002991 2.0e-07 60.1 67 41.8
CSS0011343 Camellia sinensis var. sinensis HOM05D002665 ORTHO05D002991 2.0e-07 60.1 71 42.3
CSS0018914 Camellia sinensis var. sinensis HOM05D002665 ORTHO05D002991 2.0e-07 60.1 71 42.3
Dinv13248 Davidia involucrata HOM05D002665 ORTHO05D002991 2.0e-07 60.1 142 30.3
Glyma.04G078500 Glycine max HOM05D002665 ORTHO05D002991 2.0e-07 60.1 42 59.5
Glyma.06G080100 Glycine max HOM05D002665 ORTHO05D002991 2.0e-07 60.1 42 59.5
HanXRQChr03g0082951 Helianthus annuus HOM05D002665 ORTHO05D002991 2.0e-07 60.1 65 47.7
HanXRQChr17g0538701 Helianthus annuus HOM05D002665 ORTHO05D002991 2.0e-07 60.1 68 42.6
QL12p026047 Quercus lobata HOM05D002665 ORTHO05D002991 2.0e-07 60.1 45 57.8
ECA246G1443 Erigeron canadensis HOM05D002665 ORTHO05D002991 2.7e-07 59.7 150 28.7
Thhalv10025225m.g Eutrema salsugineum HOM05D002665 ORTHO05D002991 2.7e-07 59.7 71 39.4
Lalb_Chr23g0269331 Lupinus albus HOM05D002665 ORTHO05D002991 2.7e-07 59.7 47 55.3
Sed0013595 Sechium edule HOM05D002665 ORTHO05D002991 2.7e-07 59.7 88 31.8
unitig_747.g21906 Utricularia gibba HOM05D002665 ORTHO05D002991 3.5e-07 59.3 95 36.8
Actinidia22249 Actinidia chinensis HOM05D002665 ORTHO05D002991 4.5e-07 58.9 64 46.9
BcaNung05320 Brassica carinata HOM05D002665 ORTHO05D002991 4.5e-07 58.9 70 40.0
FvH4_2g36360 Fragaria vesca HOM05D002665 ORTHO05D002991 4.5e-07 58.9 45 57.8
Sabra06G0214600 Salix brachista HOM05D002665 ORTHO05D002991 4.5e-07 58.9 153 29.4
TPR.G1355 Trifolium pratense HOM05D002665 ORTHO05D002991 4.5e-07 58.9 154 31.8
Medtr3g109330 Medicago truncatula HOM05D002665 ORTHO05D002991 5.9e-07 58.5 45 60.0
RcHm_v2.0_Chr6g0305521 Rosa chinensis HOM05D002665 ORTHO05D002991 5.9e-07 58.5 56 50.0
Thecc.09G004300 Theobroma cacao HOM05D002665 ORTHO05D002991 5.9e-07 58.5 153 28.8
AT4G31340 Arabidopsis thaliana HOM05D002665 ORTHO05D002991 7.7e-07 58.2 70 40.0
DCAR_004551 Daucus carota HOM05D002665 ORTHO05D002991 7.7e-07 58.2 152 28.3
Oeu002014.1 Olea europaea HOM05D002665 ORTHO05D002991 7.7e-07 58.2 153 28.8
A03p60640 Brassica napus HOM05D002665 ORTHO05D002991 1.0e-06 57.8 65 43.1
ClCG11G013940 Citrullus lanatus HOM05D002665 ORTHO05D002991 1.0e-06 57.8 42 54.8
Hma1.2p1_0891F.1_g233110 Hydrangea macrophylla HOM05D002665 ORTHO05D002991 1.0e-06 57.8 40 62.5
Hma1.2p1_0891F.1_g233120 Hydrangea macrophylla HOM05D002665 ORTHO05D002991 1.0e-06 57.8 40 62.5
Sc09g0007840 Simmondsia chinensis HOM05D002665 ORTHO05D002991 1.0e-06 57.8 153 30.1
TAR625G0782 Trochodendron aralioides HOM05D002665 ORTHO05D002991 1.0e-06 57.8 149 28.2
Lalb_Chr08g0243391 Lupinus albus HOM05D002665 ORTHO05D002991 1.3e-06 57.4 42 57.1
Lalb_Chr11g0064281 Lupinus albus HOM05D002665 ORTHO05D002991 1.3e-06 57.4 50 54.0
Sc06g0001220 Simmondsia chinensis HOM05D002665 ORTHO05D002991 1.3e-06 57.4 147 29.9
CARHR239220 Cardamine hirsuta HOM05D002665 ORTHO05D002991 1.7e-06 57.0 70 38.6
MELO3C003595.2 Cucumis melo HOM05D002665 ORTHO05D002991 1.7e-06 57.0 67 43.3
BcaNung01529 Brassica carinata HOM05D002665 ORTHO05D002684 2.3e-06 56.6 65 43.1
C07p58550 Brassica napus HOM05D002665 ORTHO05D002991 2.3e-06 56.6 65 43.1
BolC7t46310H Brassica oleracea HOM05D002665 ORTHO05D002991 2.3e-06 56.6 65 43.1
Sed0019725 Sechium edule HOM05D002665 ORTHO05D002991 2.3e-06 56.6 72 44.4
SGA_v2.0_scaffold169G38589 Striga asiatica HOM05D000033 ORTHO05D001317 2.3e-06 56.6 68 41.2
Aa31LG7G11370 Aethionema arabicum HOM05D002665 ORTHO05D002991 2.9e-06 56.2 96 31.2
CSS0015738 Camellia sinensis var. sinensis HOM05D002665 ORTHO05D002991 2.9e-06 56.2 44 52.3
CsaV3_3G047330 Cucumis sativus L. HOM05D002665 ORTHO05D002991 2.9e-06 56.2 67 43.3
MBI16_g34881_MAGBIO Magnolia biondii HOM05D002665 ORTHO05D002991 2.9e-06 56.2 61 49.2
PSO170G0184 Papaver somniferum HOM05D002665 ORTHO05D002991 2.9e-06 56.2 61 41.0
Gohir.A05G065951 Gossypium hirsutum HOM05D002665 ORTHO05D002991 3.8e-06 55.8 67 41.8
TAR383G0456 Trochodendron aralioides HOM05D002665 ORTHO05D002991 3.8e-06 55.8 149 30.2
TAR626G1487 Trochodendron aralioides HOM05D002665 ORTHO05D002991 3.8e-06 55.8 57 49.1
MBI13_g31541_MAGBIO Magnolia biondii HOM05D002665 ORTHO05D002991 5.0e-06 55.5 73 41.1
PSO144G0166 Papaver somniferum HOM05D002665 ORTHO05D002991 5.0e-06 55.5 61 41.0
BraA03t15106Z Brassica rapa HOM05D002665 ORTHO05D002991 6.6e-06 55.1 65 41.5
Gohir.D05G068300 Gossypium hirsutum HOM05D002665 ORTHO05D002991 8.6e-06 54.7 67 40.3
Gorai.009G069200 Gossypium raimondii HOM05D002665 ORTHO05D002991 8.6e-06 54.7 67 40.3
Lsat_1_v5_gn_5_59921 Lactuca sativa HOM05D002665 ORTHO05D002991 8.6e-06 54.7 81 38.3
Sp7g29200 Schrenkiella parvula HOM05D002665 ORTHO05D002991 8.6e-06 54.7 57 43.9


User provided reference genes

Program Settings