Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g017880 Solanum pennellii HOM05D007312 ORTHO05D009209 4.4e-65 251.1 125 100.0
PGSC0003DMG400010438 Solanum tuberosum HOM05D007312 ORTHO05D009209 4.4e-65 251.1 125 100.0
Solyc02g068710.3 Solanum lycopersicum HOM05D007312 ORTHO05D009209 6.3e-64 247.3 125 99.2
Nitab4.5_0007745g0050 Nicotiana tabacum HOM05D007312 ORTHO05D009209 5.0e-61 237.7 125 95.2
Nitab4.5_0001288g0230 Nicotiana tabacum HOM05D007312 ORTHO05D009209 4.2e-60 234.6 125 94.4
Peaxi162Scf00149g00224 Petunia axillaris HOM05D007312 ORTHO05D009209 2.6e-57 225.3 125 88.8
Cc09_g06000 Coffea canephora HOM05D007312 ORTHO05D009209 1.4e-50 203.0 125 81.6
TWI63G0684 Tripterygium wilfordii HOM05D007312 ORTHO05D009209 1.8e-50 202.6 126 82.5
Potri.012G124500 Populus trichocarpa HOM05D007312 ORTHO05D009209 3.0e-50 201.8 128 82.0
MD05G1250400 Malus domestica HOM05D007312 ORTHO05D009209 6.7e-50 200.7 131 80.9
MSTRG.7597 Avicennia marina HOM05D007312 ORTHO05D009209 8.8e-50 200.3 126 80.2
Duzib052G0161 Durio zibethinus HOM05D007312 ORTHO05D009209 2.0e-49 199.1 127 81.1
GSVIVG01012104001 Vitis vinifera HOM05D007312 ORTHO05D009209 2.0e-49 199.1 125 78.4
AL1G49340 Arabidopsis lyrata HOM05D007312 ORTHO05D009209 2.6e-49 198.7 128 77.3
Medtr4g084180 Medicago truncatula HOM05D007312 ORTHO05D009209 2.6e-49 198.7 128 82.0
Ciclev10017175m.g Citrus clementina HOM05D007312 ORTHO05D009209 3.3e-49 198.4 129 79.1
Gohir.A12G046700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 4.4e-49 198.0 126 81.0
Manes.16G055800 Manihot esculenta HOM05D007312 ORTHO05D009209 4.4e-49 198.0 129 78.3
Actinidia22408 Actinidia chinensis HOM05D007312 ORTHO05D009209 5.7e-49 197.6 125 78.4
AT1G31170 Arabidopsis thaliana HOM05D007312 ORTHO05D009209 7.5e-49 197.2 128 76.6
CARHR030640 Cardamine hirsuta HOM05D007312 ORTHO05D009209 1.3e-48 196.4 128 75.8
SGA_v2.0_scaffold298G47689 Striga asiatica HOM05D007312 ORTHO05D009209 1.3e-48 196.4 126 78.6
Thhalv10009117m.g Eutrema salsugineum HOM05D007312 ORTHO05D009209 1.7e-48 196.1 128 76.6
TAR624G0630 Trochodendron aralioides HOM05D007312 ORTHO05D009209 1.7e-48 196.1 125 78.4
Hma1.2p1_1005F.1_g246920 Hydrangea macrophylla HOM05D007312 ORTHO05D009209 2.2e-48 195.7 133 75.9
QL11p016282 Quercus lobata HOM05D007312 ORTHO05D009209 2.8e-48 195.3 127 78.0
TPR.G38271 Trifolium pratense HOM05D007312 ORTHO05D009209 2.8e-48 195.3 127 81.1
Sabra12G0094300 Salix brachista HOM05D007312 ORTHO05D009209 6.3e-48 194.1 123 82.1
CiPaw.09G076400 Carya illinoinensis HOM05D007312 ORTHO05D009209 1.1e-47 193.4 128 76.6
Phvul.002G097300 Phaseolus vulgaris HOM05D007312 ORTHO05D009209 1.1e-47 193.4 131 77.1
Ca_18754_v3 Cicer arietinum L. HOM05D007312 ORTHO05D009209 2.4e-47 192.2 130 78.5
Glyma.20G019100 Glycine max HOM05D007312 ORTHO05D009209 2.4e-47 192.2 131 77.9
BcaC07g37774 Brassica carinata HOM05D007312 ORTHO05D009209 3.1e-47 191.8 124 77.4
PGR042G3076 Punica granatum HOM05D007312 ORTHO05D009209 3.1e-47 191.8 129 77.5
Atru.chr10.560 Acer truncatum HOM05D007312 ORTHO05D009209 4.1e-47 191.4 128 75.8
Sp1g26990 Schrenkiella parvula HOM05D007312 ORTHO05D009209 4.1e-47 191.4 129 76.0
CAN.G149.9 Capsicum annuum HOM05D007312 ORTHO05D009209 5.3e-47 191.0 96 94.8
VMungo0251G1106 Vigna mungo HOM05D007312 ORTHO05D009209 9.1e-47 190.3 131 74.8
BcaB04g18176 Brassica carinata HOM05D007312 ORTHO05D009209 1.2e-46 189.9 130 76.9
Eucgr.E04250 Eucalyptus grandis HOM05D007312 ORTHO05D009209 1.2e-46 189.9 135 74.1
Lj4g0021225 Lotus japonicus HOM05D007312 ORTHO05D009209 1.2e-46 189.9 131 76.3
RcHm_v2.0_Chr5g0020311 Rosa chinensis HOM05D007312 ORTHO05D009209 1.2e-46 189.9 131 75.6
CSS0025621 Camellia sinensis var. sinensis HOM05D007312 ORTHO05D009209 1.6e-46 189.5 131 73.3
Lj2A350T56 Lonicera japonica HOM05D007312 ORTHO05D009209 1.6e-46 189.5 123 78.0
EL10Ac5g12681 Beta vulgaris HOM05D007312 ORTHO05D009209 2.0e-46 189.1 125 77.6
Carub.0001s2957 Capsella rubella HOM05D007312 ORTHO05D009209 3.5e-46 188.3 124 75.8
ECA234G3951 Erigeron canadensis HOM05D007312 ORTHO05D009209 3.5e-46 188.3 131 73.3
RhsimUnG0109200 Rhododendron simsii HOM05D007312 ORTHO05D009209 3.5e-46 188.3 120 79.2
CANSAT35G0781 Cannabis sativa HOM05D007312 ORTHO05D009209 4.5e-46 188.0 126 74.6
MELO3C021735.2 Cucumis melo HOM05D007312 ORTHO05D009209 7.7e-46 187.2 129 75.2
AUR62010557 Chenopodium quinoa HOM05D007312 ORTHO05D009209 1.0e-45 186.8 115 80.0
ClCG01G009570 Citrullus lanatus HOM05D007312 ORTHO05D009209 1.3e-45 186.4 129 75.2
CsaV3_1G046220 Cucumis sativus L. HOM05D007312 ORTHO05D009209 1.3e-45 186.4 129 75.2
Rhsim13G0146500 Rhododendron simsii HOM05D007312 ORTHO05D009209 2.2e-45 185.7 120 78.3
HanXRQChr12g0381571 Helianthus annuus HOM05D007312 ORTHO05D009209 2.9e-45 185.3 130 71.5
MBI18_g11473_MAGBIO Magnolia biondii HOM05D007312 ORTHO05D009209 3.8e-45 184.9 115 77.4
SalBow8G4543 Salvia bowleyana HOM05D007312 ORTHO05D009209 3.8e-45 184.9 121 77.7
Migut.M01988 Erythranthe guttata HOM05D007312 ORTHO05D009209 6.5e-45 184.1 100 88.0
THA.LOC104798553 Tarenaya hassleriana HOM05D007312 ORTHO05D009209 6.5e-45 184.1 129 72.1
Hund14701 Selenicereus undatus HOM05D007312 ORTHO05D009209 1.1e-44 183.3 123 78.0
BolC8t48163H Brassica oleracea HOM05D007312 ORTHO05D009209 2.5e-44 182.2 119 76.5
A08p10710 Brassica napus HOM05D007312 ORTHO05D009209 9.4e-44 180.3 125 74.4
BraA08t33069Z Brassica rapa HOM05D007312 ORTHO05D009209 9.4e-44 180.3 125 74.4
FvH4_3g12430 Fragaria vesca HOM05D007312 ORTHO05D009209 9.4e-44 180.3 126 75.4
Ah.01g020500 Amaranthus hybridus HOM05D007312 ORTHO05D009209 2.1e-43 179.1 120 75.0
arahy.Tifrunner.gnm1.ann1.XDA00H Arachis hypogaea HOM05D007312 ORTHO05D009209 2.1e-43 179.1 126 74.6
Lsat_1_v5_gn_3_106761 Lactuca sativa HOM05D007312 ORTHO05D009209 2.1e-43 179.1 131 74.8
CDE02G1125 Ceratophyllum demersum HOM05D007312 ORTHO05D009209 3.6e-43 178.3 128 71.9
AUR62017332 Chenopodium quinoa HOM05D007312 ORTHO05D009209 4.7e-43 177.9 115 77.4
Lalb_Chr16g0385171 Lupinus albus HOM05D007312 ORTHO05D009209 4.7e-43 177.9 129 71.3
vmacro03527 Vaccinium macrocarpon HOM05D007312 ORTHO05D009209 6.1e-43 177.6 95 88.4
Zm00001eb375250 Zea mays HOM05D007312 ORTHO05D009209 6.1e-43 177.6 117 75.2
Aa31LG2G15110 Aethionema arabicum HOM05D007312 ORTHO05D009209 8.0e-43 177.2 107 81.3
Os06g0174300 Oryza sativa ssp. japonica HOM05D007312 ORTHO05D009209 1.8e-42 176.0 112 78.6
Psat7g129800 Pisum sativum HOM05D007312 ORTHO05D009209 1.8e-42 176.0 118 79.7
PSO541G3426 Papaver somniferum HOM05D007312 ORTHO05D009209 7.5e-41 170.6 130 66.9
unitig_32.g10991 Utricularia gibba HOM05D000532 ORTHO05D009209 7.5e-41 170.6 92 84.8
HPP92_010212 Vanilla planifolia HOM05D007312 ORTHO05D009209 3.1e-39 165.2 120 68.3
arahy.Tifrunner.gnm1.ann1.FJ5394 Arachis hypogaea HOM05D007312 ORTHO05D009209 9.1e-39 163.7 125 69.6
Haze_06075 Corylus avellana HOM05D007312 ORTHO05D009209 9.1e-39 163.7 123 70.7
Nn7g38246 Nelumbo nucifera HOM05D007312 ORTHO05D009209 5.9e-38 161.0 125 69.6
Aqoxy1G01718 Aquilegia oxysepala HOM05D007312 ORTHO05D009209 1.3e-37 159.8 85 89.4
Pp3c7_15740 Physcomitrium patens HOM05D007312 ORTHO05D009209 3.3e-36 155.2 113 67.3
SMO145G0246 Selaginella moellendorffii HOM05D007312 ORTHO05D009209 3.0e-34 148.7 85 80.0
Mapoly0066s0018 Marchantia polymorpha HOM05D007312 ORTHO05D009209 1.4e-31 139.8 157 49.7
Dinv25919 Davidia involucrata HOM05D007312 ORTHO05D009209 4.5e-30 134.8 89 78.7
Cre17.g729950 Chlamydomonas reinhardtii HOM05D007312 ORTHO05D009209 1.0e-29 133.7 108 63.0
RcHm_v2.0_Chr2g0126261 Rosa chinensis HOM05D007312 ORTHO05D009209 3.8e-29 131.7 85 76.5
Oeu056034.1 Olea europaea HOM05D007312 ORTHO05D009209 5.6e-28 127.9 88 78.4
CBR_g4 Chara braunii HOM05D007312 ORTHO05D009209 1.2e-27 126.7 89 66.3
Prupe.4G113200 Prunus persica HOM05D007312 ORTHO05D009209 6.1e-27 124.4 97 73.2
HPP92_010191 Vanilla planifolia HOM05D007312 ORTHO05D009209 4.0e-26 121.7 125 55.2
FAN25G0614 Fragaria x ananassa HOM05D007312 ORTHO05D009209 1.0e-21 107.1 99 64.6
Thecc.02G008700 Theobroma cacao HOM05D007312 ORTHO05D009209 6.6e-21 104.4 84 70.2
Gorai.008G048300 Gossypium raimondii HOM05D007312 ORTHO05D009209 5.6e-20 101.3 79 72.2
Gohir.D12G045700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 7.3e-20 100.9 79 72.2
Cpa.g.sc5085.1 Carica papaya HOM05D007312 ORTHO05D009209 1.8e-18 96.3 79 69.6
Sc01g0008940 Simmondsia chinensis HOM05D007312 ORTHO05D009209 6.8e-18 94.4 80 65.0
ATR0752G167 Amborella trichopoda HOM05D007312 ORTHO05D009209 2.0e-17 92.8 91 58.2
FAN21G0246 Fragaria x ananassa HOM05D007312 ORTHO05D009209 2.6e-17 92.4 86 61.6
FAN16G3369 Fragaria x ananassa HOM05D007312 ORTHO05D009209 9.8e-17 90.5 83 63.9
Sed0015339 Sechium edule HOM05D007312 ORTHO05D009209 4.9e-16 88.2 84 60.7
COL.COLO4_17652 Corchorus olitorius HOM05D007312 ORTHO05D009209 6.4e-16 87.8 84 57.1
Lalb_Chr09g0328681 Lupinus albus HOM05D007312 ORTHO05D009209 1.9e-15 86.3 41 90.2
Sabra12G0063500 Salix brachista HOM05D007312 ORTHO05D009209 5.4e-15 84.7 54 81.5
Potri.015G124601 Populus trichocarpa HOM05D007312 ORTHO05D009209 1.7e-08 63.2 42 69.0
Lalb_Chr09g0328671 Lupinus albus HOM05D007312 ORTHO05D009209 7.1e-07 57.8 87 46.0


User provided reference genes

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