Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g017720 Solanum pennellii HOM05D000320 ORTHO05D000532 2.6e-127 458.8 237 100.0
PGSC0003DMG400010445 Solanum tuberosum HOM05D000320 ORTHO05D000532 4.2e-93 345.1 238 79.4
CAN.G149.5 Capsicum annuum HOM05D000320 ORTHO05D000532 7.2e-93 344.4 246 78.5
Peaxi162Scf00199g00027 Petunia axillaris HOM05D000320 ORTHO05D000532 7.4e-74 281.2 243 67.5
Nitab4.5_0000443g0040 Nicotiana tabacum HOM05D000320 ORTHO05D000532 2.0e-71 273.1 243 67.1
Nitab4.5_0006786g0020 Nicotiana tabacum HOM05D000320 ORTHO05D000532 3.8e-62 242.3 243 61.3
Nitab4.5_0002305g0030 Nicotiana tabacum HOM05D000320 ORTHO05D000532 3.6e-52 209.1 243 53.1
Nitab4.5_0000138g0080 Nicotiana tabacum HOM05D000320 ORTHO05D000532 2.0e-50 203.4 243 52.7
Peaxi162Scf00198g00084 Petunia axillaris HOM05D000320 ORTHO05D000532 3.4e-50 202.6 240 52.1
Solyc02g031860.3 Solanum lycopersicum HOM05D000320 ORTHO05D000532 6.3e-49 198.4 243 49.8
Sopen02g010140 Solanum pennellii HOM05D000320 ORTHO05D000532 2.4e-48 196.4 243 49.4
Solyc02g031910.2 Solanum lycopersicum HOM05D000320 ORTHO05D000532 1.3e-46 190.7 213 52.6
Sopen02g010190 Solanum pennellii HOM05D000320 ORTHO05D000532 6.6e-46 188.3 213 51.6
Cc09_g05830 Coffea canephora HOM05D000320 ORTHO05D000532 1.1e-29 134.4 204 42.6
Dinv09065 Davidia involucrata HOM05D000320 ORTHO05D000532 1.4e-27 127.5 260 39.2
Oeu041456.1 Olea europaea HOM05D000320 ORTHO05D000532 1.7e-25 120.6 240 35.0
FAN21G2730 Fragaria x ananassa HOM05D000320 ORTHO05D000532 2.1e-23 113.6 243 37.4
Duzib132G0663 Durio zibethinus HOM05D000320 ORTHO05D000532 3.5e-23 112.8 225 34.7
FAN16G3018 Fragaria x ananassa HOM05D000320 ORTHO05D000532 7.8e-23 111.7 259 35.5
FvH4_3g12590 Fragaria vesca HOM05D000320 ORTHO05D000532 3.9e-22 109.4 252 35.7
Thecc.02G006800 Theobroma cacao HOM05D000320 ORTHO05D000532 3.9e-22 109.4 223 35.4
QL11p013513 Quercus lobata HOM05D000320 ORTHO05D000532 8.6e-22 108.2 242 36.4
FAN25G2399 Fragaria x ananassa HOM05D000320 ORTHO05D000532 1.1e-21 107.8 252 35.7
Rhsim13G0170400 Rhododendron simsii HOM05D000320 ORTHO05D000532 4.3e-21 105.9 250 36.0
MD05G1249500 Malus domestica HOM05D000320 ORTHO05D000532 1.2e-20 104.4 229 36.7
GSVIVG01012116001 Vitis vinifera HOM05D000320 ORTHO05D000532 1.4e-19 100.9 240 36.2
Gohir.D12G046700 Gossypium hirsutum HOM05D000320 ORTHO05D000532 6.8e-19 98.6 224 34.4
Eucgr.D00034 Eucalyptus grandis HOM05D000320 ORTHO05D000532 8.9e-19 98.2 209 38.8
Gorai.008G049200 Gossypium raimondii HOM05D000320 ORTHO05D000532 8.9e-19 98.2 224 34.4
Oeu052643.3 Olea europaea HOM05D000320 ORTHO05D000532 8.9e-19 98.2 229 35.4
CiPaw.09G075200 Carya illinoinensis HOM05D000320 ORTHO05D000532 1.5e-18 97.4 232 35.8
Duzib052G0109 Durio zibethinus HOM05D000320 ORTHO05D000532 2.0e-18 97.1 234 33.8
Gohir.A12G047900 Gossypium hirsutum HOM05D000320 ORTHO05D000532 2.0e-18 97.1 222 33.3
Potri.001G123500 Populus trichocarpa HOM05D000320 ORTHO05D000532 2.6e-18 96.7 205 35.6
CiPaw.10G063400 Carya illinoinensis HOM05D000320 ORTHO05D000532 7.6e-18 95.1 226 34.5
Potri.003G110000 Populus trichocarpa HOM05D000320 ORTHO05D000532 1.3e-17 94.4 205 35.6
CSS0032305 Camellia sinensis var. sinensis HOM05D000320 ORTHO05D000532 2.2e-17 93.6 221 33.5
Cfa000690 Carpinus fangiana HOM05D000320 ORTHO05D000532 2.2e-17 93.6 233 35.2
TAR627G0806 Trochodendron aralioides HOM05D000320 ORTHO05D000532 2.2e-17 93.6 198 38.9
ClCG03G004250 Citrullus lanatus HOM05D000320 ORTHO05D000532 4.9e-17 92.4 223 36.3
Ciclev10014052m.g Citrus clementina HOM05D000320 ORTHO05D000532 6.4e-17 92.0 234 33.3
COL.COLO4_17643 Corchorus olitorius HOM05D000320 ORTHO05D000532 2.4e-16 90.1 230 33.0
MD10G1229900 Malus domestica HOM05D000320 ORTHO05D000532 2.4e-16 90.1 221 35.7
Sed0019644 Sechium edule HOM05D000320 ORTHO05D000532 2.4e-16 90.1 212 35.8
MELO3C002407.2 Cucumis melo HOM05D000320 ORTHO05D000532 5.4e-16 89.0 213 36.6
Prupe.4G114600 Prunus persica HOM05D000320 ORTHO05D000532 5.4e-16 89.0 230 35.2
MSTRG.16361 Avicennia marina HOM05D000320 ORTHO05D000532 7.1e-16 88.6 217 30.9
Haze_06101 Corylus avellana HOM05D000320 ORTHO05D000532 7.1e-16 88.6 209 38.3
TAR629G1940 Trochodendron aralioides HOM05D000320 ORTHO05D000532 9.3e-16 88.2 195 36.4
CSS0018266 Camellia sinensis var. sinensis HOM05D000320 ORTHO05D000532 1.6e-15 87.4 227 32.2
FAN16G3642 Fragaria x ananassa HOM05D000320 ORTHO05D000532 1.0e-14 84.7 203 36.9
Sabra03G0076200 Salix brachista HOM05D000320 ORTHO05D000532 1.3e-14 84.3 220 31.8
Hma1.2p1_0181F.1_g079990 Hydrangea macrophylla HOM05D000320 ORTHO05D000532 3.0e-14 83.2 229 31.0
Sabra01G0095300 Salix brachista HOM05D000320 ORTHO05D000532 3.0e-14 83.2 190 34.2
CsaV3_1G010200 Cucumis sativus L. HOM05D000320 ORTHO05D000532 3.9e-14 82.8 213 35.7
Nn7g38211 Nelumbo nucifera HOM05D000320 ORTHO05D000532 5.1e-14 82.4 217 35.5
RcHm_v2.0_Chr5g0020551 Rosa chinensis HOM05D000320 ORTHO05D000532 6.6e-14 82.0 240 31.2
CANSAT64G0182 Cannabis sativa HOM05D000320 ORTHO05D000532 3.3e-13 79.7 214 32.2
Migut.M01991 Erythranthe guttata HOM05D000320 ORTHO05D000532 1.6e-12 77.4 204 32.4
Actinidia22417 Actinidia chinensis HOM05D000320 ORTHO05D000532 2.8e-12 76.6 194 31.4
Dinv42473 Davidia involucrata HOM05D000320 ORTHO05D000532 1.4e-11 74.3 201 33.3
TWI38G1777 Tripterygium wilfordii HOM05D000320 ORTHO05D000532 1.8e-11 73.9 226 32.7
Aqoxy5G00191 Aquilegia oxysepala HOM05D000320 ORTHO05D000532 5.3e-11 72.4 161 36.0
Rhsim06G0242800 Rhododendron simsii HOM05D000320 ORTHO05D000532 1.2e-10 71.2 144 36.1
SalBow1G3755 Salvia bowleyana HOM05D000320 ORTHO05D000532 1.2e-10 71.2 199 30.7
SalBow8G3874 Salvia bowleyana HOM05D000320 ORTHO05D000532 1.2e-10 71.2 199 30.7
Atru.chr1.90 Acer truncatum HOM05D000320 ORTHO05D000532 1.5e-10 70.9 185 33.0
TWI63G1416 Tripterygium wilfordii HOM05D000320 ORTHO05D000532 1.5e-10 70.9 222 29.7
Atru.chr10.477 Acer truncatum HOM05D000320 ORTHO05D000532 2.6e-10 70.1 222 28.4
TAR626G0759 Trochodendron aralioides HOM05D000320 ORTHO05D000532 4.4e-10 69.3 201 32.8
Hma1.2p1_0334F.1_g128500 Hydrangea macrophylla HOM05D000320 ORTHO05D000532 7.6e-10 68.6 164 36.0
Haze_07814 Corylus avellana HOM05D000320 ORTHO05D000532 4.9e-09 65.9 123 42.3
Manes.14G010100 Manihot esculenta HOM05D000320 ORTHO05D000532 4.9e-09 65.9 197 32.0
Potri.005G095200 Populus trichocarpa HOM05D000320 ORTHO05D000532 6.4e-09 65.5 147 32.0
PGR004G2218 Punica granatum HOM05D000320 ORTHO05D000532 2.4e-08 63.5 202 32.2
PSO541G0727 Papaver somniferum HOM05D000320 ORTHO05D000532 3.2e-08 63.2 147 35.4
Actinidia24663 Actinidia chinensis HOM05D000320 ORTHO05D000532 4.2e-08 62.8 220 33.6
vmacro11693 Vaccinium macrocarpon HOM05D000320 ORTHO05D000532 4.2e-08 62.8 65 56.9
Prupe.4G132000 Prunus persica HOM05D000320 ORTHO05D000532 5.4e-08 62.4 195 29.7
Thecc.07G183000 Theobroma cacao HOM05D000320 ORTHO05D000532 5.4e-08 62.4 171 34.5
GSVIVG01036758001 Vitis vinifera HOM05D000320 ORTHO05D000532 5.4e-08 62.4 166 31.9
Aa31LG7G800 Aethionema arabicum HOM05D000320 ORTHO05D000532 7.1e-08 62.0 140 35.0
ECA240G3650 Erigeron canadensis HOM05D000320 ORTHO05D000532 9.3e-08 61.6 107 41.1
CiPaw.11G061500 Carya illinoinensis HOM05D000320 ORTHO05D000532 1.2e-07 61.2 197 31.0
Ciclev10004181m.g Citrus clementina HOM05D000320 ORTHO05D000532 1.2e-07 61.2 147 36.7
Sabra07G0057000 Salix brachista HOM05D000320 ORTHO05D000532 2.1e-07 60.5 144 31.2
MSTRG.13081 Avicennia marina HOM05D000320 ORTHO05D000532 2.7e-07 60.1 91 41.8
BolC8t52000H Brassica oleracea HOM05D000320 ORTHO05D000532 2.7e-07 60.1 176 32.4
C08p44540 Brassica napus HOM05D000320 ORTHO05D000532 7.9e-07 58.5 176 32.4
Cfa019407 Carpinus fangiana HOM05D000320 ORTHO05D000532 1.0e-06 58.2 221 29.4
Thhalv10006624m.g Eutrema salsugineum HOM05D000320 ORTHO05D000532 1.0e-06 58.2 124 37.1
Gohir.D01G084300 Gossypium hirsutum HOM05D000320 ORTHO05D000532 1.0e-06 58.2 209 30.6
PSO675G7467 Papaver somniferum HOM05D000320 ORTHO05D000532 1.0e-06 58.2 186 32.3
BraA07t30350Z Brassica rapa HOM05D000320 ORTHO05D000532 1.3e-06 57.8 153 33.3
Glyma.08G165800 Glycine max HOM05D000320 ORTHO05D000532 1.3e-06 57.8 196 29.1
AL1G28390 Arabidopsis lyrata HOM05D000320 ORTHO05D000532 2.3e-06 57.0 198 30.3
CARHR016740 Cardamine hirsuta HOM05D000320 ORTHO05D000532 3.9e-06 56.2 156 32.7
Gorai.002G110000 Gossypium raimondii HOM05D000320 ORTHO05D000532 3.9e-06 56.2 166 30.7
AT1G16270 Arabidopsis thaliana HOM05D000320 ORTHO05D000532 5.1e-06 55.8 209 29.2
A09p60960 Brassica napus HOM05D000320 ORTHO05D000532 5.1e-06 55.8 176 33.0
FAN16G3402 Fragaria x ananassa HOM05D000320 ORTHO05D000532 5.1e-06 55.8 183 30.6
HanXRQChr03g0078161 Helianthus annuus HOM05D000320 ORTHO05D000532 5.1e-06 55.8 166 32.5
Lj8C157T3 Lonicera japonica HOM05D000320 ORTHO05D000532 5.1e-06 55.8 218 28.9
C06p29800 Brassica napus HOM05D000320 ORTHO05D000532 6.6e-06 55.5 143 34.3
BolC6t38141H Brassica oleracea HOM05D000320 ORTHO05D000532 6.6e-06 55.5 143 34.3
Carub.0001s1601 Capsella rubella HOM05D000320 ORTHO05D000532 8.7e-06 55.1 206 29.1
FAN11G3815 Fragaria x ananassa HOM05D000320 ORTHO05D000532 8.7e-06 55.1 179 30.7
MD10G1208700 Malus domestica HOM05D000320 ORTHO05D000532 8.7e-06 55.1 198 28.3
RcHm_v2.0_Chr5g0024161 Rosa chinensis HOM05D000320 ORTHO05D000532 8.7e-06 55.1 191 29.3


User provided reference genes

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