Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g017370 Solanum pennellii HOM05D006312 ORTHO05D007843 2.9e-94 348.6 183 100.0
Solyc02g068270.4 Solanum lycopersicum HOM05D006312 ORTHO05D007843 5.5e-93 344.4 182 97.8
CAN.G883.25 Capsicum annuum HOM05D006312 ORTHO05D007843 1.1e-72 276.9 187 80.7
Nitab4.5_0003878g0040 Nicotiana tabacum HOM05D006312 ORTHO05D007843 2.2e-65 252.7 180 74.4
Nitab4.5_0003141g0020 Nicotiana tabacum HOM05D006312 ORTHO05D007843 1.2e-63 246.9 180 73.3
Peaxi162Scf00981g00214 Petunia axillaris HOM05D006312 ORTHO05D007843 1.4e-56 223.4 186 70.4
Cc07_g12330 Coffea canephora HOM05D006312 ORTHO05D007843 6.0e-55 218.0 192 66.1
Oeu024786.1 Olea europaea HOM05D006312 ORTHO05D007843 2.5e-53 212.6 198 63.6
MSTRG.3652 Avicennia marina HOM05D006312 ORTHO05D007843 1.1e-51 207.2 137 76.6
CSS0005301 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 4.4e-50 201.8 190 62.1
Migut.K01209 Erythranthe guttata HOM05D006312 ORTHO05D007843 4.4e-50 201.8 179 64.2
CSS0026635 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 2.2e-49 199.5 190 61.6
SGA_v2.0_scaffold132G34566 Striga asiatica HOM05D006312 ORTHO05D007843 4.9e-49 198.4 150 69.3
Rhsim08G0025300 Rhododendron simsii HOM05D006312 ORTHO05D007843 2.4e-48 196.1 139 73.4
HanXRQChr16g0532211 Helianthus annuus HOM05D006312 ORTHO05D007843 5.4e-48 194.9 116 78.4
Actinidia28758 Actinidia chinensis HOM05D006312 ORTHO05D007843 9.2e-48 194.1 194 58.8
SalBow5G1176 Salvia bowleyana HOM05D006312 ORTHO05D007843 9.2e-48 194.1 121 76.0
ECA246G0189 Erigeron canadensis HOM05D006312 ORTHO05D007843 1.2e-47 193.7 114 80.7
arahy.Tifrunner.gnm1.ann1.YWP2KZ Arachis hypogaea HOM05D006312 ORTHO05D007843 4.6e-47 191.8 148 66.9
Manes.02G117611 Manihot esculenta HOM05D006312 ORTHO05D007843 4.6e-47 191.8 143 69.9
arahy.Tifrunner.gnm1.ann1.Y34PHS Arachis hypogaea HOM05D006312 ORTHO05D007843 1.0e-46 190.7 148 66.9
TPR.G19116 Trifolium pratense HOM05D006312 ORTHO05D007843 1.0e-46 190.7 136 69.9
DCAR_016700 Daucus carota HOM05D006312 ORTHO05D007843 1.3e-46 190.3 186 57.5
Eucgr.J02573 Eucalyptus grandis HOM05D006312 ORTHO05D007843 1.7e-46 189.9 136 72.8
COL.COLO4_27421 Corchorus olitorius HOM05D006312 ORTHO05D007843 2.3e-46 189.5 151 66.2
Hund13396 Selenicereus undatus HOM05D006312 ORTHO05D007843 3.0e-46 189.1 153 65.4
Actinidia35692 Actinidia chinensis HOM05D006312 ORTHO05D007843 3.9e-46 188.7 188 58.0
Ca_08638_v3 Cicer arietinum L. HOM05D006312 ORTHO05D007843 5.1e-46 188.3 138 68.8
Sed0011609 Sechium edule HOM05D006312 ORTHO05D007843 6.6e-46 188.0 161 62.1
VMungo1383G0261 Vigna mungo HOM05D006312 ORTHO05D007843 6.6e-46 188.0 140 69.3
Hma1.2p1_0034F.1_g021580 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 1.1e-45 187.2 185 61.6
PGR102G2008 Punica granatum HOM05D006312 ORTHO05D007843 1.5e-45 186.8 148 68.2
Sabra16G0308500 Salix brachista HOM05D006312 ORTHO05D007843 1.5e-45 186.8 190 58.9
MD02G1107600 Malus domestica HOM05D006312 ORTHO05D007843 1.9e-45 186.4 143 66.4
Thecc.05G202100 Theobroma cacao HOM05D006312 ORTHO05D007843 2.5e-45 186.0 151 66.2
EL10Ac2g02752 Beta vulgaris HOM05D006312 ORTHO05D007843 3.3e-45 185.7 118 78.8
Phvul.001G155800 Phaseolus vulgaris HOM05D006312 ORTHO05D007843 4.3e-45 185.3 138 68.8
Lsat_1_v5_gn_3_68340 Lactuca sativa HOM05D006312 ORTHO05D007843 5.6e-45 184.9 151 62.3
Cpa.g.sc178.37 Carica papaya HOM05D006312 ORTHO05D007843 7.3e-45 184.5 136 69.1
Psat3g060840 Pisum sativum HOM05D006312 ORTHO05D007843 9.6e-45 184.1 137 67.2
Gorai.013G007100 Gossypium raimondii HOM05D006312 ORTHO05D007843 1.2e-44 183.7 128 69.5
Potri.001G455900 Populus trichocarpa HOM05D006312 ORTHO05D007843 1.2e-44 183.7 190 57.9
Prupe.7G188400 Prunus persica HOM05D006312 ORTHO05D007843 1.2e-44 183.7 171 57.9
CANSAT21G2119 Cannabis sativa HOM05D006312 ORTHO05D007843 2.8e-44 182.6 146 65.1
Atru.chr2.1887 Acer truncatum HOM05D006312 ORTHO05D007843 3.6e-44 182.2 151 62.3
Glyma.19G160500 Glycine max HOM05D006312 ORTHO05D007843 3.6e-44 182.2 155 60.6
Gohir.A13G006700 Gossypium hirsutum HOM05D006312 ORTHO05D007843 4.7e-44 181.8 190 58.4
Glyma.03G158200 Glycine max HOM05D006312 ORTHO05D007843 6.2e-44 181.4 181 57.5
Aqoxy6G03048 Aquilegia oxysepala HOM05D006312 ORTHO05D007843 8.1e-44 181.0 142 65.5
RcHm_v2.0_Chr2g0096661 Rosa chinensis HOM05D006312 ORTHO05D007843 8.1e-44 181.0 140 66.4
Sc10g0004590 Simmondsia chinensis HOM05D006312 ORTHO05D007843 1.4e-43 180.3 133 66.9
TWI34G0319 Tripterygium wilfordii HOM05D006312 ORTHO05D007843 1.4e-43 180.3 135 68.1
Gohir.D13G006900 Gossypium hirsutum HOM05D006312 ORTHO05D007843 1.8e-43 179.9 190 57.9
ATR0605G230 Amborella trichopoda HOM05D006312 ORTHO05D007843 2.4e-43 179.5 134 64.9
Ciclev10012864m.g Citrus clementina HOM05D006312 ORTHO05D007843 3.1e-43 179.1 195 52.8
TAR376G0343 Trochodendron aralioides HOM05D006312 ORTHO05D007843 5.2e-43 178.3 160 60.0
Lj1g0018795 Lotus japonicus HOM05D006312 ORTHO05D007843 1.2e-42 177.2 119 73.1
Potri.011G146200 Populus trichocarpa HOM05D006312 ORTHO05D007843 1.5e-42 176.8 112 74.1
MBI04_g11525_MAGBIO Magnolia biondii HOM05D006312 ORTHO05D007843 2.0e-42 176.4 194 54.6
AUR62031725 Chenopodium quinoa HOM05D006312 ORTHO05D007843 2.6e-42 176.0 116 74.1
MELO3C007014.2 Cucumis melo HOM05D006312 ORTHO05D007843 2.6e-42 176.0 140 62.1
AT3G51510 Arabidopsis thaliana HOM05D006312 ORTHO05D007843 9.9e-42 174.1 140 62.9
THA.LOC104808852 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 9.9e-42 174.1 147 64.6
AUR62032612 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.7e-41 173.3 130 68.5
QL06p053470 Quercus lobata HOM05D006312 ORTHO05D007843 1.7e-41 173.3 189 54.5
Zm00001eb291320 Zea mays HOM05D006312 ORTHO05D007843 2.9e-41 172.6 143 65.0
BcaNung00380 Brassica carinata HOM05D006312 ORTHO05D007843 3.8e-41 172.2 138 63.0
A01p23400 Brassica napus HOM05D006312 ORTHO05D007843 3.8e-41 172.2 138 63.8
C01p29030 Brassica napus HOM05D006312 ORTHO05D007843 3.8e-41 172.2 138 64.5
BolC1t02835H Brassica oleracea HOM05D006312 ORTHO05D007843 3.8e-41 172.2 138 64.5
BraA01t02247Z Brassica rapa HOM05D006312 ORTHO05D007843 3.8e-41 172.2 138 63.8
AL5G31950 Arabidopsis lyrata HOM05D006312 ORTHO05D007843 4.9e-41 171.8 140 62.1
CsaV3_6G052950 Cucumis sativus L. HOM05D006312 ORTHO05D007843 6.4e-41 171.4 178 52.8
THA.LOC104815359 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 6.4e-41 171.4 116 70.7
BcaB01g00508 Brassica carinata HOM05D006312 ORTHO05D007843 1.1e-40 170.6 140 62.9
Cfa007119 Carpinus fangiana HOM05D006312 ORTHO05D007843 1.1e-40 170.6 195 51.3
ClCG01G025710 Citrullus lanatus HOM05D006312 ORTHO05D007843 1.1e-40 170.6 156 57.1
C08p26760 Brassica napus HOM05D006312 ORTHO05D007843 1.9e-40 169.9 144 61.1
BolC8t50289H Brassica oleracea HOM05D006312 ORTHO05D007843 1.9e-40 169.9 144 61.1
Dinv28290 Davidia involucrata HOM05D006312 ORTHO05D007843 2.4e-40 169.5 124 68.5
Dinv24398 Davidia involucrata HOM05D006312 ORTHO05D007843 3.2e-40 169.1 123 68.3
A09p44660 Brassica napus HOM05D006312 ORTHO05D007843 4.2e-40 168.7 140 62.1
Carub.0005s1789 Capsella rubella HOM05D006312 ORTHO05D007843 4.2e-40 168.7 138 61.6
CARHR161090 Cardamine hirsuta HOM05D006312 ORTHO05D007843 4.2e-40 168.7 154 57.8
Thhalv10010756m.g Eutrema salsugineum HOM05D006312 ORTHO05D007843 4.2e-40 168.7 167 55.1
PSO675G2564 Papaver somniferum HOM05D006312 ORTHO05D007843 5.4e-40 168.3 166 53.0
HPP92_005603 Vanilla planifolia HOM05D006312 ORTHO05D007843 7.1e-40 167.9 122 63.9
SEGI_12518 Sequoiadendron giganteum HOM05D006312 ORTHO05D007843 9.3e-40 167.5 153 58.2
Os05g0490900 Oryza sativa ssp. japonica HOM05D006312 ORTHO05D007843 1.2e-39 167.2 135 65.9
BraA09t39926Z Brassica rapa HOM05D006312 ORTHO05D007843 2.7e-39 166.0 169 55.0
FAN23G3058 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.7e-39 166.0 140 63.6
FAN19G0451 Fragaria x ananassa HOM05D006312 ORTHO05D007843 3.5e-39 165.6 140 63.6
FAN23G0139 Fragaria x ananassa HOM05D006312 ORTHO05D007843 3.5e-39 165.6 140 63.6
FAN26G2993 Fragaria x ananassa HOM05D006312 ORTHO05D007843 3.5e-39 165.6 140 63.6
FAN28G0218 Fragaria x ananassa HOM05D006312 ORTHO05D007843 3.5e-39 165.6 140 63.6
PSO541G2566 Papaver somniferum HOM05D006312 ORTHO05D007843 3.5e-39 165.6 189 49.7
Medtr7g095930 Medicago truncatula HOM05D006312 ORTHO05D007843 4.6e-39 165.2 130 67.7
FAN23G0893 Fragaria x ananassa HOM05D006312 ORTHO05D007843 6.0e-39 164.9 108 75.0
Sp5g10730 Schrenkiella parvula HOM05D006312 ORTHO05D007843 6.0e-39 164.9 163 57.1
Lalb_Chr01g0019941 Lupinus albus HOM05D006312 ORTHO05D007843 1.0e-38 164.1 125 67.2
FvH4_1g09790 Fragaria vesca HOM05D006312 ORTHO05D007843 3.9e-38 162.2 177 54.2
CDE07G0026 Ceratophyllum demersum HOM05D006312 ORTHO05D007843 2.1e-36 156.4 155 57.4
CiPaw.08G182900 Carya illinoinensis HOM05D006312 ORTHO05D007843 8.1e-36 154.5 104 72.1
unitig_748.g7258 Utricularia gibba HOM05D006312 ORTHO05D007843 9.0e-35 151.0 141 56.7
GSVIVG01026613001 Vitis vinifera HOM05D006312 ORTHO05D007843 1.5e-34 150.2 93 80.6
Lj2A507T48 Lonicera japonica HOM05D006312 ORTHO05D007843 1.9e-32 143.3 161 54.0
MD15G1226900 Malus domestica HOM05D006312 ORTHO05D007843 3.2e-32 142.5 116 62.9
SMO356G0733 Selaginella moellendorffii HOM05D006312 ORTHO05D007843 3.2e-32 142.5 109 61.5
vmacro18480 Vaccinium macrocarpon HOM05D006312 ORTHO05D007843 4.2e-32 142.1 115 66.1
Hma1.2p1_0034F.1_g021590 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 2.3e-30 136.3 120 64.2
Mapoly0072s0008 Marchantia polymorpha HOM05D006312 ORTHO05D007843 3.3e-29 132.5 185 41.6
CBR_g16852 Chara braunii HOM05D006312 ORTHO05D007843 4.3e-29 132.1 132 53.0
Ah.12g058670 Amaranthus hybridus HOM05D006312 ORTHO05D007843 9.6e-29 131.0 94 68.1
Pp3c12_25230 Physcomitrium patens HOM05D006312 ORTHO05D007843 9.6e-29 131.0 172 44.8
AagrBONN_evm.TU.Sc2ySwM_117.3170 Anthoceros agrestis HOM05D006312 ORTHO05D007843 2.1e-28 129.8 188 40.4
Nn6g34643 Nelumbo nucifera HOM05D006312 ORTHO05D007843 4.8e-28 128.6 158 48.7
Haze_03648 Corylus avellana HOM05D006312 ORTHO05D007843 4.0e-27 125.6 169 45.6
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 9.0e-27 124.4 108 63.0
Cre16.g679300 Chlamydomonas reinhardtii HOM05D006312 ORTHO05D007843 3.8e-17 92.4 121 43.0
MCO03G312 Micromonas commoda HOM05D006312 ORTHO05D007843 1.9e-16 90.1 98 46.9
CSS0018042 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 3.3e-13 79.3 48 77.1
Aa31LG10G3290 Aethionema arabicum HOM05D001371 ORTHO05D001319 6.3e-12 75.1 123 44.7
CSS0013138 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 3.1e-11 72.8 61 60.7
Manes.01G158400 Manihot esculenta HOM05D006312 ORTHO05D007843 1.4e-06 57.4 65 52.3
PRCOL_00002065 Prasinoderma coloniale HOM05D006312 ORTHO05D007843 1.4e-06 57.4 81 43.2


User provided reference genes

Program Settings