Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g017030 Solanum pennellii HOM05D007617 ORTHO05D007195 5.6e-60 234.2 126 100.0
Solyc02g067910.1 Solanum lycopersicum HOM05D007617 ORTHO05D007195 3.0e-58 228.4 126 96.8
PGSC0003DMG400006919 Solanum tuberosum HOM05D007617 ORTHO05D007195 6.6e-53 210.7 125 89.6
CAN.G1057.14 Capsicum annuum HOM05D007617 ORTHO05D007195 4.7e-43 177.9 130 76.2
Nitab4.5_0004496g0030 Nicotiana tabacum HOM05D007617 ORTHO05D007195 3.0e-37 158.7 133 70.7
Nitab4.5_0000040g0620 Nicotiana tabacum HOM05D007617 ORTHO05D007195 2.0e-33 146.0 133 69.2
PGSC0003DMG400012616 Solanum tuberosum HOM05D007617 ORTHO05D007195 1.2e-25 120.2 140 60.7
Sopen02g038090 Solanum pennellii HOM05D007617 ORTHO05D007195 2.7e-22 109.0 140 56.4
Nitab4.5_0014774g0010 Nicotiana tabacum HOM05D007617 ORTHO05D007195 5.1e-21 104.8 134 56.7
Peaxi162Scf00080g00151 Petunia axillaris HOM05D007617 ORTHO05D007195 8.7e-21 104.0 124 54.0
DCAR_011273 Daucus carota HOM05D007617 ORTHO05D007195 4.4e-17 91.7 132 51.5
Lsat_1_v5_gn_2_94241 Lactuca sativa HOM05D007617 ORTHO05D007195 4.4e-17 91.7 135 51.1
Lsat_1_v5_gn_2_91001 Lactuca sativa HOM05D007617 ORTHO05D007195 1.4e-15 86.7 135 49.6
Aqoxy5G03650 Aquilegia oxysepala HOM05D007617 ORTHO05D007195 2.4e-15 85.9 69 75.4
Hma1.2p1_0818F.1_g223400 Hydrangea macrophylla HOM05D007617 ORTHO05D007195 2.4e-15 85.9 136 50.0
vmacro18302 Vaccinium macrocarpon HOM05D007617 ORTHO05D007195 2.7e-14 82.4 128 45.3
Prupe.3G296000 Prunus persica HOM05D007617 ORTHO05D007195 1.1e-12 77.0 64 68.8
Potri.012G090700 Populus trichocarpa HOM05D007617 ORTHO05D007195 1.5e-12 76.6 127 45.7
Ciclev10022896m.g Citrus clementina HOM05D007617 ORTHO05D007195 1.9e-12 76.3 134 45.5
QL02p073546 Quercus lobata HOM05D007617 ORTHO05D007195 1.9e-12 76.3 131 45.8
Oeu023836.1 Olea europaea HOM05D007617 ORTHO05D007195 2.5e-12 75.9 158 43.0
Ciclev10017789m.g Citrus clementina HOM05D007617 ORTHO05D007195 4.3e-12 75.1 67 68.7
Cc07_g00130 Coffea canephora HOM05D007617 ORTHO05D007195 4.3e-12 75.1 122 46.7
Oeu054643.1 Olea europaea HOM05D007617 ORTHO05D007195 4.3e-12 75.1 133 44.4
Sed0018064 Sechium edule HOM05D007617 ORTHO05D007195 4.3e-12 75.1 140 45.7
SGA_v2.0_scaffold47G17524 Striga asiatica HOM05D007617 ORTHO05D007195 4.3e-12 75.1 131 48.1
Dinv33408 Davidia involucrata HOM05D007617 ORTHO05D007195 1.3e-11 73.6 110 49.1
TPR.G31739 Trifolium pratense HOM05D007617 ORTHO05D007195 1.6e-11 73.2 104 43.3
Medtr1g093790 Medicago truncatula HOM05D007617 ORTHO05D007195 3.6e-11 72.0 104 44.2
MD06G1161600 Malus domestica HOM05D007617 ORTHO05D007195 6.2e-11 71.2 136 45.6
Lsat_1_v5_gn_3_30061 Lactuca sativa HOM05D007617 ORTHO05D007195 8.1e-11 70.9 129 47.3
Psat6g179560 Pisum sativum HOM05D007617 ORTHO05D007195 2.4e-10 69.3 104 43.3
FvH4_5g06710 Fragaria vesca HOM05D007617 ORTHO05D007195 3.1e-10 68.9 128 43.0
ATR1145G009 Amborella trichopoda HOM05D007617 ORTHO05D007195 4.0e-10 68.6 97 50.5
FAN08G2040 Fragaria x ananassa HOM05D007617 ORTHO05D007195 5.3e-10 68.2 130 43.1
Manes.14G057300 Manihot esculenta HOM05D007617 ORTHO05D007195 5.3e-10 68.2 130 45.4
Oeu050454.1 Olea europaea HOM05D007617 ORTHO05D007195 6.9e-10 67.8 133 41.4
FAN13G2538 Fragaria x ananassa HOM05D007617 ORTHO05D007195 9.0e-10 67.4 129 43.4
Lalb_Chr21g0317701 Lupinus albus HOM05D007617 ORTHO05D007195 1.2e-09 67.0 131 45.0
FAN18G3066 Fragaria x ananassa HOM05D007617 ORTHO05D007195 1.5e-09 66.6 128 43.0
Atru.chr6.2453 Acer truncatum HOM05D007617 ORTHO05D007195 2.0e-09 66.2 65 64.6
RcHm_v2.0_Chr7g0191931 Rosa chinensis HOM05D007617 ORTHO05D007195 2.0e-09 66.2 67 64.2
Glyma.05G114700 Glycine max HOM05D007617 ORTHO05D007195 2.6e-09 65.9 117 41.0
Thecc.03G118700 Theobroma cacao HOM05D011792 ORTHO05D007195 2.6e-09 65.9 90 53.3
Atru.chr9.1807 Acer truncatum HOM05D007617 ORTHO05D007195 3.4e-09 65.5 133 42.9
MSTRG.15542 Avicennia marina HOM05D007617 ORTHO05D007195 3.4e-09 65.5 132 43.2
PGR142G0897 Punica granatum HOM05D007617 ORTHO05D007195 3.4e-09 65.5 131 43.5
TAR374G0075 Trochodendron aralioides HOM05D007617 ORTHO05D007195 3.4e-09 65.5 67 61.2
Phvul.004G059700 Phaseolus vulgaris HOM05D007617 ORTHO05D007195 4.5e-09 65.1 132 41.7
Sc04g0009720 Simmondsia chinensis HOM05D007617 ORTHO05D007195 4.5e-09 65.1 68 63.2
CANSAT64G0294 Cannabis sativa HOM05D007617 ORTHO05D007195 9.9e-09 63.9 141 40.4
Hund06047 Selenicereus undatus HOM05D007617 ORTHO05D007195 1.3e-08 63.5 129 41.9
Lalb_Chr02g0158101 Lupinus albus HOM05D007617 ORTHO05D007195 2.2e-08 62.8 133 40.6
VMungo0464G0279 Vigna mungo HOM05D007617 ORTHO05D007195 2.2e-08 62.8 132 41.7
ClCG05G013140 Citrullus lanatus HOM05D007617 ORTHO05D007195 3.8e-08 62.0 119 41.2
Migut.K01418 Erythranthe guttata HOM05D007617 ORTHO05D007195 3.8e-08 62.0 135 41.5
SGA_v2.0_scaffold30G12404 Striga asiatica HOM05D007617 ORTHO05D007195 3.8e-08 62.0 141 41.1
EL10As2g23175 Beta vulgaris HOM05D007617 ORTHO05D007195 4.9e-08 61.6 127 44.9
Manes.06G112400 Manihot esculenta HOM05D007617 ORTHO05D007195 6.4e-08 61.2 138 39.1
Migut.K00629 Erythranthe guttata HOM05D007617 ORTHO05D007195 1.1e-07 60.5 66 59.1
Rhsim08G0047600 Rhododendron simsii HOM05D007617 ORTHO05D007195 1.1e-07 60.5 130 41.5
Aa31LG1G18820 Aethionema arabicum HOM05D010525 ORTHO05D007195 1.9e-07 59.7 138 38.4
Glyma.19G053100 Glycine max HOM05D007617 ORTHO05D007195 2.4e-07 59.3 127 40.9
AL5G27740 Arabidopsis lyrata HOM05D010525 ORTHO05D007195 3.2e-07 58.9 70 57.1
Haze_07632 Corylus avellana HOM05D007617 ORTHO05D007195 3.2e-07 58.9 144 37.5
MD02G1049300 Malus domestica HOM05D007617 ORTHO05D007195 3.2e-07 58.9 137 45.3
QL10p005918 Quercus lobata HOM05D007617 ORTHO05D007195 3.2e-07 58.9 141 37.6
MSTRG.549 Avicennia marina HOM05D007617 ORTHO05D007195 5.5e-07 58.2 63 58.7
CiPaw.03G047400 Carya illinoinensis HOM05D007617 ORTHO05D007195 7.1e-07 57.8 127 39.4
CiPaw.09G026700 Carya illinoinensis HOM05D007617 ORTHO05D007195 7.1e-07 57.8 127 39.4
FAN04G0785 Fragaria x ananassa HOM05D007617 ORTHO05D007195 7.1e-07 57.8 129 41.1
Lj2g0010313 Lotus japonicus HOM05D007617 ORTHO05D007195 7.1e-07 57.8 134 38.1
CARHR276990 Cardamine hirsuta HOM05D010525 ORTHO05D007195 1.6e-06 56.6 76 53.9
TWI39G0914 Tripterygium wilfordii HOM05D007617 ORTHO05D007195 1.6e-06 56.6 131 38.2
Thhalv10010898m.g Eutrema salsugineum HOM05D010525 ORTHO05D007195 2.1e-06 56.2 73 56.2
Ca_11155_v3 Cicer arietinum L. HOM05D007617 ORTHO05D007195 2.7e-06 55.8 103 40.8
Ca_11158_v3 Cicer arietinum L. HOM05D007617 ORTHO05D007195 2.7e-06 55.8 103 40.8
CsaV3_3G027400 Cucumis sativus L. HOM05D007617 ORTHO05D007195 2.7e-06 55.8 74 52.7
TWI23G0333 Tripterygium wilfordii HOM05D007617 ORTHO05D007195 4.6e-06 55.1 130 37.7
TAR371G0337 Trochodendron aralioides HOM05D007617 ORTHO05D007195 4.6e-06 55.1 140 37.1
Carub.0008s2391 Capsella rubella HOM05D010525 ORTHO05D007195 6.0e-06 54.7 139 38.1
MELO3C014838.2 Cucumis melo HOM05D007617 ORTHO05D007195 6.0e-06 54.7 128 39.8
Potri.001G340100 Populus trichocarpa HOM05D007617 ORTHO05D007195 7.9e-06 54.3 61 60.7


User provided reference genes

Program Settings