Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 3.7e-188 661.4 334 100.0
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 1.3e-180 636.3 334 97.3
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 1.9e-176 622.5 334 94.0
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 2.1e-151 539.3 335 81.8
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 3.2e-147 525.4 337 80.7
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 3.0e-137 492.3 334 74.9
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 2.3e-81 306.6 352 48.6
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 7.8e-69 265.0 343 45.2
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 4.3e-67 259.2 324 46.0
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 3.6e-66 256.1 358 44.4
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 4.4e-64 249.2 357 43.1
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 7.5e-64 248.4 337 44.5
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 9.8e-64 248.1 329 43.8
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 8.3e-63 245.0 329 42.6
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 1.3e-60 237.7 315 46.7
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 1.1e-59 234.6 331 43.8
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 1.9e-59 233.8 321 43.3
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 1.6e-58 230.7 334 38.3
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 1.6e-58 230.7 379 39.1
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 2.3e-57 226.9 326 42.0
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 1.5e-56 224.2 336 41.4
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 2.0e-56 223.8 325 42.5
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 9.9e-56 221.5 331 42.0
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 1.3e-55 221.1 337 40.4
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 2.1e-53 213.8 332 39.8
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 2.7e-53 213.4 343 42.6
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 5.1e-52 209.1 252 47.2
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 2.5e-51 206.8 324 39.8
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 7.3e-51 205.3 334 38.3
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 1.1e-49 201.4 322 39.1
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 1.1e-49 201.4 329 39.2
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 1.8e-49 200.7 324 38.9
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 2.0e-48 197.2 342 39.8
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 9.9e-48 194.9 328 38.1
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 1.3e-47 194.5 332 39.2
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 2.2e-47 193.7 318 39.3
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 4.9e-47 192.6 333 38.4
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 1.9e-46 190.7 318 38.7
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 7.1e-46 188.7 328 38.1
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 2.7e-45 186.8 331 38.1
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 3.5e-45 186.4 336 38.7
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 1.9e-43 180.6 329 39.8
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 1.9e-43 180.6 329 39.8
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 3.3e-43 179.9 329 38.6
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 7.3e-43 178.7 329 35.3
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 7.3e-43 178.7 330 36.7
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 2.1e-42 177.2 371 32.3
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 3.6e-42 176.4 320 37.2
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 4.8e-42 176.0 354 33.6
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 4.8e-42 176.0 321 37.1
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 6.2e-42 175.6 323 37.5
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.8e-41 174.1 324 35.8
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 4.0e-41 172.9 322 36.0
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.5e-40 171.0 321 35.2
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 4.5e-40 169.5 324 36.4
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 6.4e-39 165.6 356 34.0
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 1.1e-38 164.9 320 36.2
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 1.1e-38 164.9 321 34.3
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 1.9e-38 164.1 317 37.2
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 3.2e-38 163.3 319 35.1
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 5.4e-38 162.5 355 32.7
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 5.4e-38 162.5 322 33.2
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 7.9e-37 158.7 319 34.2
Hund23035 Selenicereus undatus HOM05D006554 ORTHO05D008778 2.1e-34 150.6 309 36.9
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 9.9e-32 141.7 294 37.4
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 1.3e-31 141.4 334 32.3
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 1.7e-31 141.0 284 35.9
Psat7g108920 Pisum sativum HOM05D006554 ORTHO05D008778 1.7e-31 141.0 250 40.4
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 2.2e-31 140.6 314 34.1
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 7.1e-30 135.6 117 55.6
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 2.3e-28 130.6 326 31.3
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 5.6e-27 125.9 221 38.5
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 3.7e-26 123.2 103 58.3
Lj7A603G61 Lonicera japonica HOM05D006554 ORTHO05D008778 5.8e-24 115.9 157 45.9
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 1.9e-22 110.9 102 53.9
DCAR_002966 Daucus carota HOM05D006554 ORTHO05D008778 5.1e-20 102.8 232 32.3
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 1.1e-19 101.7 331 27.8
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 4.3e-19 99.8 326 25.5
Ca_06565_v3 Cicer arietinum L. HOM05D006554 ORTHO05D008778 5.7e-19 99.4 192 38.0
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 2.1e-18 97.4 326 24.8
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 2.1e-18 97.4 331 25.7
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 2.1e-18 97.4 326 24.8
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 2.8e-18 97.1 331 26.3
VMungo1383G3169 Vigna mungo HOM05D006554 ORTHO05D008778 3.7e-18 96.7 170 41.2
Atru.chr6.2450 Acer truncatum HOM05D006554 ORTHO05D008778 4.8e-18 96.3 193 35.8
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 6.3e-18 95.9 327 26.3
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 8.2e-18 95.5 331 24.8
SEGI_16878 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 8.2e-18 95.5 383 24.0
CDE02G2727 Ceratophyllum demersum HOM05D003393 ORTHO05D003916 1.8e-17 94.4 120 38.3
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 2.4e-17 94.0 326 27.0
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 4.1e-17 93.2 161 34.8
CDE09G0234 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 9.0e-17 92.0 124 38.7
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 1.5e-16 91.3 330 26.4
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 2.0e-16 90.9 127 37.0
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 2.0e-16 90.9 126 34.1
Carub.0005s0577 Capsella rubella HOM05D006554 ORTHO05D008778 5.9e-16 89.4 321 28.0
HPP92_003738 Vanilla planifolia HOM05D006554 ORTHO05D008778 5.9e-16 89.4 267 31.5
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 1.0e-15 88.6 129 35.7
SHI53794 Sapria himalayana HOM05D006554 ORTHO05D008778 1.3e-15 88.2 106 45.3
Cpa.g.sc130.63 Carica papaya HOM05D006554 ORTHO05D008778 1.7e-15 87.8 133 39.1
COL.COLO4_29198 Corchorus olitorius HOM05D006554 ORTHO05D008778 1.7e-15 87.8 230 32.6
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 9.3e-14 82.0 71 50.7
FAN09G3965 Fragaria x ananassa HOM05D000664 ORTHO05D000491 9.3e-14 82.0 159 36.5
Thhalv10004828m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 2.7e-13 80.5 255 29.8
Sp2g16620 Schrenkiella parvula HOM05D006554 ORTHO05D008778 2.7e-13 80.5 332 28.3
AT3G27420 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 6.1e-13 79.3 213 29.6
PSO210G7616 Papaver somniferum HOM05D006554 ORTHO05D008778 1.0e-12 78.6 102 46.1
Aa31LG9G1020 Aethionema arabicum HOM05D006554 ORTHO05D008778 2.3e-12 77.4 327 25.1
BcaB07g30158 Brassica carinata HOM05D006554 ORTHO05D008778 1.1e-11 75.1 139 38.8
BraA02t08548Z Brassica rapa HOM05D006554 ORTHO05D017433 2.2e-10 70.9 188 33.5
A02p35470 Brassica napus HOM05D006554 ORTHO05D017433 1.1e-09 68.6 188 33.0
CDE09G1186 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 1.1e-09 68.6 157 33.1
Cpa.g.sc130.62 Carica papaya HOM05D006554 ORTHO05D008778 1.8e-09 67.8 114 39.5
C02p54190 Brassica napus HOM05D006554 ORTHO05D008778 2.4e-09 67.4 181 32.6
BolC2t11482H Brassica oleracea HOM05D006554 ORTHO05D008778 2.4e-09 67.4 184 32.6
BcaC03g17463 Brassica carinata HOM05D006554 ORTHO05D017433 9.1e-09 65.5 183 31.1
CBR_g49972 Chara braunii HOM05D000336 ORTHO05D002705 9.1e-09 65.5 109 33.0
Mapoly0010s0030 Marchantia polymorpha HOM05D000336 ORTHO05D002705 9.1e-09 65.5 86 38.4
Eucgr.L02321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 4.5e-08 63.2 63 47.6
Eucgr.C03321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 1.0e-07 62.0 63 47.6
Pp3c22_7000 Physcomitrium patens HOM05D000336 ORTHO05D002705 1.0e-07 62.0 96 35.4
SEGI_39566 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 1.7e-07 61.2 123 30.9
Sc03g0007220 Simmondsia chinensis HOM05D006554 ORTHO05D008778 1.7e-07 61.2 192 32.3
SalBow3G1252 Salvia bowleyana HOM05D000336 ORTHO05D002705 2.9e-07 60.5 97 32.0
Eucgr.F01485 Eucalyptus grandis HOM05D006554 ORTHO05D008778 3.8e-07 60.1 78 38.5
Gohir.D10G116100 Gossypium hirsutum HOM05D006554 ORTHO05D008778 3.8e-07 60.1 107 40.2
Pp3c18_15420 Physcomitrium patens HOM05D000336 ORTHO05D002705 3.8e-07 60.1 96 36.5
MSTRG.4151 Avicennia marina HOM05D000336 ORTHO05D002705 5.0e-07 59.7 123 26.8
Potri.010G219200 Populus trichocarpa HOM05D000336 ORTHO05D002705 6.5e-07 59.3 119 31.1
MBI02_g34318_MAGBIO Magnolia biondii HOM05D000336 ORTHO05D002705 8.5e-07 58.9 123 28.5
Nitab4.5_0013605g0010 Nicotiana tabacum HOM05D000336 ORTHO05D002705 1.1e-06 58.5 123 26.0
Pp3c21_9250 Physcomitrium patens HOM05D000336 ORTHO05D002705 1.1e-06 58.5 105 32.4
TAR633G1495 Trochodendron aralioides HOM05D000336 ORTHO05D002705 1.1e-06 58.5 103 30.1
CAN.G220.42 Capsicum annuum HOM05D000336 ORTHO05D002705 1.4e-06 58.2 103 28.2
Psat4g111960 Pisum sativum HOM05D000336 ORTHO05D002705 1.4e-06 58.2 130 27.7
Lsat_1_v5_gn_1_75080 Lactuca sativa HOM05D000336 ORTHO05D002705 1.9e-06 57.8 117 26.5
Pp3c19_8020 Physcomitrium patens HOM05D000336 ORTHO05D002705 1.9e-06 57.8 66 42.4
Gorai.011G128000 Gossypium raimondii HOM05D006554 ORTHO05D008778 2.5e-06 57.4 107 39.3
Gorai.001G185000 Gossypium raimondii HOM05D004314 ORTHO05D018179 3.2e-06 57.0 106 38.7
Sc05g0003330 Simmondsia chinensis HOM05D000336 ORTHO05D002705 3.2e-06 57.0 123 27.6
Lj2g0014987 Lotus japonicus HOM05D000336 ORTHO05D002705 4.2e-06 56.6 97 29.9
Nitab4.5_0005460g0050 Nicotiana tabacum HOM05D000336 ORTHO05D002705 4.2e-06 56.6 117 28.2
Peaxi162Scf00602g00315 Petunia axillaris HOM05D000336 ORTHO05D002705 4.2e-06 56.6 123 25.2
Nitab4.5_0000233g0240 Nicotiana tabacum HOM05D000336 ORTHO05D002705 5.5e-06 56.2 117 28.2
Aqoxy2G01232 Aquilegia oxysepala HOM05D000336 ORTHO05D002705 7.2e-06 55.8 115 27.8
Gohir.A05G345700 Gossypium hirsutum HOM05D000336 ORTHO05D002705 7.2e-06 55.8 117 27.4
Gohir.D04G084800 Gossypium hirsutum HOM05D000336 ORTHO05D002705 7.2e-06 55.8 117 27.4
Gorai.012G094500 Gossypium raimondii HOM05D000336 ORTHO05D002705 7.2e-06 55.8 117 27.4
PSO384G0900 Papaver somniferum HOM05D000336 ORTHO05D002705 7.2e-06 55.8 123 25.2
Peaxi162Scf00108g00148 Petunia axillaris HOM05D000336 ORTHO05D002705 7.2e-06 55.8 104 28.8
Rhsim02G0042000 Rhododendron simsii HOM05D000336 ORTHO05D002705 7.2e-06 55.8 117 27.4
Manes.07G103100 Manihot esculenta HOM05D000336 ORTHO05D002705 9.4e-06 55.5 97 29.9
PSO339G5221 Papaver somniferum HOM05D000336 ORTHO05D002705 9.4e-06 55.5 117 25.6


User provided reference genes

Program Settings