Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g016670 Solanum pennellii HOM05D006434 ORTHO05D008069 1.8e-190 669.1 339 100.0
Solyc02g067540.3 Solanum lycopersicum HOM05D006434 ORTHO05D008069 5.3e-190 667.5 339 99.7
PGSC0003DMG400006900 Solanum tuberosum HOM05D006434 ORTHO05D008069 8.7e-185 650.2 339 97.1
CAN.G1128.11 Capsicum annuum HOM05D006434 ORTHO05D008069 1.1e-171 606.7 339 90.6
Nitab4.5_0001727g0150 Nicotiana tabacum HOM05D006434 ORTHO05D008069 5.5e-171 604.4 338 89.9
Peaxi162Scf00059g00128 Petunia axillaris HOM05D006434 ORTHO05D008069 1.1e-147 526.9 336 81.2
Dinv35002 Davidia involucrata HOM05D006434 ORTHO05D008069 1.0e-129 467.2 323 74.0
Actinidia06053 Actinidia chinensis HOM05D006434 ORTHO05D008069 4.6e-125 451.8 324 71.6
CSS0040499 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.0e-124 450.7 336 71.1
CSS0004781 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.3e-124 450.3 325 73.2
TAR629G3263 Trochodendron aralioides HOM05D006434 ORTHO05D008069 1.5e-123 446.8 335 69.6
vmacro05779 Vaccinium macrocarpon HOM05D006434 ORTHO05D008069 1.5e-123 446.8 323 70.6
Rhsim10G0029400 Rhododendron simsii HOM05D006434 ORTHO05D008069 1.9e-123 446.4 325 71.1
Hma1.2p1_0136F.1_g062090 Hydrangea macrophylla HOM05D006434 ORTHO05D008069 2.3e-121 439.5 265 81.1
Oeu022866.3 Olea europaea HOM05D006434 ORTHO05D008069 5.8e-120 434.9 357 64.4
Migut.H00876 Erythranthe guttata HOM05D006434 ORTHO05D008069 9.8e-120 434.1 321 71.7
Sed0011674 Sechium edule HOM05D006434 ORTHO05D008069 1.3e-119 433.7 330 66.7
GSVIVG01032566001 Vitis vinifera HOM05D006434 ORTHO05D008069 1.3e-119 433.7 322 69.9
Cc07_g02850 Coffea canephora HOM05D006434 ORTHO05D008069 1.7e-119 433.3 320 69.1
Cfa007492 Carpinus fangiana HOM05D006434 ORTHO05D008069 4.1e-118 428.7 327 69.7
Nn1g08819 Nelumbo nucifera HOM05D006434 ORTHO05D008069 9.2e-118 427.6 314 69.7
Atru.chr8.2465 Acer truncatum HOM05D006434 ORTHO05D008069 2.1e-117 426.4 280 74.6
CANSAT64G2331 Cannabis sativa HOM05D006434 ORTHO05D008069 1.5e-115 420.2 324 67.6
Eucgr.I01896 Eucalyptus grandis HOM05D006434 ORTHO05D008069 1.5e-115 420.2 275 74.2
MELO3C021484.2 Cucumis melo HOM05D006434 ORTHO05D008069 2.5e-115 419.5 315 67.3
PGR142G2438 Punica granatum HOM05D006434 ORTHO05D008069 4.3e-115 418.7 317 65.9
CsaV3_5G037720 Cucumis sativus L. HOM05D006434 ORTHO05D008069 2.1e-114 416.4 319 66.5
MD09G1042700 Malus domestica HOM05D006434 ORTHO05D008069 2.8e-114 416.0 328 67.7
MSTRG.23964 Avicennia marina HOM05D006434 ORTHO05D008069 8.1e-114 414.5 271 76.8
Ciclev10012231m.g Citrus clementina HOM05D006434 ORTHO05D008069 1.1e-113 414.1 309 68.6
COL.COLO4_36989 Corchorus olitorius HOM05D006434 ORTHO05D008069 4.0e-113 412.1 324 68.2
Potri.001G349800 Populus trichocarpa HOM05D006434 ORTHO05D008069 4.0e-113 412.1 323 68.1
FAN14G5872 Fragaria x ananassa HOM05D006434 ORTHO05D008069 5.2e-113 411.8 326 69.6
FvH4_6g49670 Fragaria vesca HOM05D006434 ORTHO05D008069 2.0e-112 409.8 324 69.1
FAN02G4063 Fragaria x ananassa HOM05D006434 ORTHO05D008069 3.4e-112 409.1 327 69.1
RcHm_v2.0_Chr2g0169691 Rosa chinensis HOM05D006434 ORTHO05D008069 7.5e-112 407.9 281 73.7
TWI56G0494 Tripterygium wilfordii HOM05D006434 ORTHO05D008069 2.2e-111 406.4 318 65.7
Duzib264G0249 Durio zibethinus HOM05D006434 ORTHO05D008069 3.7e-111 405.6 328 67.4
QL02p079411 Quercus lobata HOM05D006434 ORTHO05D008069 3.7e-111 405.6 318 67.9
Gohir.D07G223600 Gossypium hirsutum HOM05D006434 ORTHO05D008069 8.3e-111 404.4 328 67.1
Gorai.001G257900 Gossypium raimondii HOM05D006434 ORTHO05D008069 8.3e-111 404.4 328 67.1
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 1.4e-110 403.7 291 70.4
Sabra16G0229200 Salix brachista HOM05D006434 ORTHO05D008069 1.4e-110 403.7 322 67.4
FAN05G1688 Fragaria x ananassa HOM05D006434 ORTHO05D008069 1.9e-110 403.3 325 68.3
Aqoxy3G00846 Aquilegia oxysepala HOM05D006434 ORTHO05D008069 3.2e-110 402.5 323 65.3
Gohir.A07G216800 Gossypium hirsutum HOM05D006434 ORTHO05D008069 4.1e-110 402.1 328 67.1
Manes.15G178000 Manihot esculenta HOM05D006434 ORTHO05D008069 4.1e-110 402.1 304 67.8
PSO161G0076 Papaver somniferum HOM05D006434 ORTHO05D008069 4.1e-110 402.1 316 66.1
PSO478G2838 Papaver somniferum HOM05D006434 ORTHO05D008069 7.8e-109 397.9 267 73.0
HanXRQChr15g0488521 Helianthus annuus HOM05D006434 ORTHO05D008069 1.0e-108 397.5 253 77.5
SGA_v2.0_scaffold205G41750 Striga asiatica HOM05D006434 ORTHO05D008069 1.0e-108 397.5 281 69.8
Lsat_1_v5_gn_4_180280 Lactuca sativa HOM05D006434 ORTHO05D008069 1.3e-108 397.1 320 66.2
AUR62018326 Chenopodium quinoa HOM05D006434 ORTHO05D008069 3.9e-108 395.6 307 65.5
Thecc.04G069300 Theobroma cacao HOM05D006434 ORTHO05D008069 2.1e-106 389.8 275 71.6
Sc10g0004040 Simmondsia chinensis HOM05D006434 ORTHO05D008069 8.1e-106 387.9 254 74.0
Phvul.004G023900 Phaseolus vulgaris HOM05D006434 ORTHO05D008069 1.4e-105 387.1 291 69.8
ATR0665G567 Amborella trichopoda HOM05D006434 ORTHO05D008069 8.9e-105 384.4 328 62.8
Lj2g0012157 Lotus japonicus HOM05D006434 ORTHO05D008069 1.2e-104 384.0 286 69.6
TPR.G32608 Trifolium pratense HOM05D006434 ORTHO05D008069 7.6e-104 381.3 305 64.9
EL10Ac2g02902 Beta vulgaris HOM05D006434 ORTHO05D008069 3.8e-103 379.0 347 60.5
arahy.Tifrunner.gnm1.ann1.X2C98S Arachis hypogaea HOM05D006434 ORTHO05D008069 1.4e-102 377.1 329 65.3
Medtr6g009400 Medicago truncatula HOM05D006434 ORTHO05D008069 1.9e-102 376.7 279 71.3
Glyma.13G066900 Glycine max HOM05D006434 ORTHO05D008069 1.2e-101 374.0 266 71.8
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 2.1e-101 373.2 295 66.4
CiPaw.03G032300 Carya illinoinensis HOM05D006434 ORTHO05D008069 1.0e-100 370.9 296 67.9
DCAR_006717 Daucus carota HOM05D006434 ORTHO05D008069 1.0e-100 370.9 223 78.9
arahy.Tifrunner.gnm1.ann1.ICRE53 Arachis hypogaea HOM05D006434 ORTHO05D008069 1.3e-100 370.5 327 64.8
AL5G18090 Arabidopsis lyrata HOM05D006434 ORTHO05D008069 2.3e-100 369.8 275 66.9
BcaC06g33735 Brassica carinata HOM05D006434 ORTHO05D008069 6.6e-100 368.2 298 64.1
Thhalv10004634m.g Eutrema salsugineum HOM05D006434 ORTHO05D008069 6.6e-100 368.2 273 68.5
Aa31LG2G4610 Aethionema arabicum HOM05D006434 ORTHO05D008069 1.1e-99 367.5 319 62.4
Carub.0005s0699 Capsella rubella HOM05D006434 ORTHO05D008069 1.5e-99 367.1 284 64.1
FAN09G0258 Fragaria x ananassa HOM05D006434 ORTHO05D008069 1.5e-99 367.1 308 66.9
unitig_744.g24344 Utricularia gibba HOM05D006434 ORTHO05D008069 1.9e-99 366.7 268 69.4
CARHR292500 Cardamine hirsuta HOM05D006434 ORTHO05D008069 4.3e-99 365.5 272 67.3
AUR62030560 Chenopodium quinoa HOM05D006434 ORTHO05D008069 4.3e-99 365.5 331 58.9
Lalb_Chr21g0319131 Lupinus albus HOM05D006434 ORTHO05D008069 5.6e-99 365.2 327 63.3
VMungo0464G0451 Vigna mungo HOM05D006434 ORTHO05D008069 9.6e-99 364.4 289 66.1
Sp2g17230 Schrenkiella parvula HOM05D006434 ORTHO05D008069 1.6e-98 363.6 275 67.6
BolC7t44265H Brassica oleracea HOM05D006434 ORTHO05D008069 1.4e-97 360.5 309 62.5
C07p37520 Brassica napus HOM05D006434 ORTHO05D008069 5.3e-97 358.6 296 63.5
THA.LOC104823923 Tarenaya hassleriana HOM05D006434 ORTHO05D008069 5.3e-97 358.6 249 70.7
A06p40510 Brassica napus HOM05D006434 ORTHO05D008069 5.8e-96 355.1 303 62.0
BraA06t26970Z Brassica rapa HOM05D006434 ORTHO05D008069 5.8e-96 355.1 303 62.0
CDE02G1577 Ceratophyllum demersum HOM05D006434 ORTHO05D008069 7.6e-96 354.8 323 57.6
Psat1g076480 Pisum sativum HOM05D006434 ORTHO05D008069 4.9e-95 352.1 277 66.1
HPP92_023566 Vanilla planifolia HOM05D006434 ORTHO05D008069 6.4e-95 351.7 252 67.9
Prupe.3G275100 Prunus persica HOM05D006434 ORTHO05D008069 1.3e-92 344.0 277 67.1
Nitab4.5_0003431g0070 Nicotiana tabacum HOM05D006434 ORTHO05D008069 6.6e-92 341.7 176 93.8
CSS0001127 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 2.5e-91 339.7 222 74.8
Haze_14607 Corylus avellana HOM05D006434 ORTHO05D008069 4.3e-91 339.0 296 64.2
Glyma.19G017500 Glycine max HOM05D006434 ORTHO05D008069 1.8e-89 333.6 197 81.2
SalBow1G5247 Salvia bowleyana HOM05D006434 ORTHO05D008069 3.1e-89 332.8 299 60.2
CSS0033350 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 4.0e-89 332.4 214 76.2
Os03g0736400 Oryza sativa ssp. japonica HOM05D006434 ORTHO05D008069 4.5e-88 328.9 322 55.9
Lj7A404T37 Lonicera japonica HOM05D006434 ORTHO05D008069 1.2e-80 304.3 237 67.5
AT3G28460 Arabidopsis thaliana HOM05D006434 ORTHO05D008069 1.5e-80 303.9 253 61.3
Cpa.g.sc14.62 Carica papaya HOM05D006434 ORTHO05D008069 4.2e-78 295.8 176 81.2
Ca_04243_v3 Cicer arietinum L. HOM05D006434 ORTHO05D008069 9.6e-75 284.6 231 63.6
Zm00001eb215320 Zea mays HOM05D006434 ORTHO05D008069 9.6e-75 284.6 287 54.0
CSS0043817 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 2.2e-71 273.5 189 72.5
Pp3c7_630 Physcomitrium patens HOM05D006434 ORTHO05D008069 1.0e-63 248.1 231 56.3
AagrBONN_evm.TU.Sc2ySwM_344.3988 Anthoceros agrestis HOM05D006434 ORTHO05D008069 1.7e-63 247.3 198 60.6
SMO171G0075 Selaginella moellendorffii HOM05D006434 ORTHO05D008069 5.0e-63 245.7 200 58.5
MBI01_g13068_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 2.7e-61 240.0 212 59.9
Hund13291 Selenicereus undatus HOM05D006434 ORTHO05D008069 2.5e-59 233.4 230 56.1
Mapoly0140s0031 Marchantia polymorpha HOM05D006434 ORTHO05D008069 4.1e-57 226.1 207 55.1
CBR_g31858 Chara braunii HOM05D006434 ORTHO05D008069 1.3e-50 204.5 235 48.1
SEGI_25544 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 1.0e-44 184.9 164 56.1
Cre13.g566300 Chlamydomonas reinhardtii HOM05D006434 ORTHO05D008069 1.1e-41 174.9 251 38.6
PRCOL_00006620 Prasinoderma coloniale HOM05D006434 ORTHO05D008069 2.0e-40 170.6 206 42.2
SEGI_38692 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 4.5e-40 169.5 125 63.2
Solyc01g057060.1 Solanum lycopersicum HOM05D006434 ORTHO05D008069 5.2e-36 156.0 99 78.8
Sopen01g021310 Solanum pennellii HOM05D006434 ORTHO05D008069 5.9e-32 142.5 87 81.6
MBI01_g13070_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 8.5e-31 138.7 83 77.1
MCO03G139 Micromonas commoda HOM05D006434 ORTHO05D008069 1.0e-28 131.7 120 51.7
MD17G1044100 Malus domestica HOM05D006434 ORTHO05D008069 7.2e-22 109.0 60 88.3
TAR371G0222 Trochodendron aralioides HOM05D006434 ORTHO05D008069 4.0e-20 103.2 75 70.7
Lsat_1_v5_gn_7_34121 Lactuca sativa HOM05D006434 ORTHO05D008069 1.6e-08 64.7 37 81.1
Lj7A404T38 Lonicera japonica HOM05D006434 ORTHO05D008069 2.3e-07 60.8 146 31.5
Cpa.g.sc14.61 Carica papaya HOM05D006434 ORTHO05D008069 5.0e-07 59.7 119 39.5
Actinidia36050 Actinidia chinensis HOM05D006434 ORTHO05D053052 7.3e-06 55.8 26 84.6


User provided reference genes

Program Settings