Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 2.3e-263 911.8 478 100.0
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.9e-230 802.4 449 94.4
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 5.3e-220 767.7 451 88.9
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.4e-172 610.1 471 73.7
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 7.2e-169 597.8 450 73.6
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 4.3e-161 572.0 545 62.2
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 5.8e-126 455.3 482 57.1
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 7.7e-78 295.4 429 45.5
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 2.8e-72 276.9 451 46.3
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 4.8e-72 276.2 418 44.5
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.4e-71 274.6 420 45.2
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 1.5e-65 254.6 438 44.1
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 3.0e-50 203.8 304 46.1
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 8.9e-50 202.2 315 43.5
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 2.6e-49 200.7 397 35.8
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 2.6e-49 200.7 400 37.8
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 5.7e-49 199.5 322 42.2
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 1.8e-47 194.5 308 40.3
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 1.8e-47 194.5 323 43.7
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 2.4e-47 194.1 324 42.0
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.4e-47 194.1 322 41.0
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 3.2e-47 193.7 426 35.0
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 5.4e-47 193.0 343 38.5
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 9.2e-47 192.2 309 42.4
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 9.2e-47 192.2 314 42.0
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 5.9e-46 189.5 459 37.5
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 5.9e-46 189.5 347 40.1
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 7.8e-46 189.1 307 43.0
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.3e-45 188.3 328 39.9
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 8.6e-45 185.7 304 43.1
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.5e-44 184.1 312 41.3
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 7.3e-44 182.6 297 41.1
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 9.5e-44 182.2 348 39.1
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.1e-43 181.0 302 41.4
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 2.8e-43 180.6 335 39.7
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 6.2e-43 179.5 291 41.6
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 3.1e-42 177.2 322 39.1
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 2.0e-41 174.5 300 40.7
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 4.4e-41 173.3 309 40.5
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 5.8e-41 172.9 304 40.8
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 9.8e-41 172.2 301 40.9
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 9.8e-41 172.2 355 39.2
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 2.9e-40 170.6 329 38.3
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 8.3e-40 169.1 354 37.3
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 1.1e-39 168.7 357 37.5
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 4.1e-39 166.8 353 37.4
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 2.0e-38 164.5 303 40.3
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 3.5e-38 163.7 335 40.3
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 6.0e-38 162.9 353 38.0
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.3e-37 161.8 299 40.8
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 3.0e-37 160.6 298 39.9
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.0e-37 160.6 303 38.6
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 3.9e-37 160.2 305 38.7
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.3e-36 157.1 175 52.6
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 4.3e-36 156.8 300 41.7
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 4.3e-36 156.8 311 40.8
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 9.5e-36 155.6 315 39.7
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 9.5e-36 155.6 320 38.4
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 9.5e-36 155.6 326 35.9
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 2.1e-35 154.5 355 35.2
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 2.8e-35 154.1 294 41.2
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 2.8e-35 154.1 302 39.7
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 3.6e-35 153.7 314 38.2
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 3.6e-35 153.7 333 36.6
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 1.1e-34 152.1 309 35.0
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.1e-34 152.1 302 40.1
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.4e-34 151.8 302 38.4
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 3.1e-34 150.6 211 45.5
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.0e-34 150.2 315 35.2
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 1.2e-33 148.7 299 36.1
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 1.5e-33 148.3 179 51.4
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 2.0e-33 147.9 309 35.9
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 2.0e-33 147.9 293 38.6
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 2.6e-33 147.5 275 37.8
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 4.4e-33 146.7 362 34.8
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 5.8e-33 146.4 294 38.4
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 7.5e-33 146.0 231 41.6
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 9.8e-33 145.6 288 39.9
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 2.2e-32 144.4 381 34.1
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 3.7e-32 143.7 305 36.1
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 3.7e-32 143.7 366 34.2
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 3.7e-32 143.7 310 37.7
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 4.9e-32 143.3 288 36.8
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 1.1e-31 142.1 143 53.8
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 2.4e-31 141.0 314 34.7
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 5.4e-31 139.8 296 40.9
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 5.4e-31 139.8 284 38.4
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.2e-30 138.7 244 39.3
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 2.1e-30 137.9 321 38.3
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.3e-29 135.2 268 38.1
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 3.9e-29 133.7 285 35.1
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 3.9e-29 133.7 285 35.1
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 5.1e-29 133.3 288 35.8
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.9e-28 131.3 145 51.0
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 9.5e-28 129.0 285 33.3
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 9.5e-28 129.0 285 33.3
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 1.6e-27 128.3 299 33.4
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 2.1e-27 127.9 341 32.3
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 4.7e-27 126.7 318 33.6
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 1.1e-26 125.6 286 32.5
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.4e-26 125.2 288 35.4
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 8.9e-26 122.5 285 35.1
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 5.8e-25 119.8 281 33.5
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 9.9e-25 119.0 285 32.6
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 2.2e-24 117.9 234 41.9
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 2.2e-24 117.9 342 32.7
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 2.9e-24 117.5 295 33.6
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 6.4e-24 116.3 325 33.5
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 6.4e-24 116.3 284 35.2
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 3.2e-23 114.0 280 35.0
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 5.4e-23 113.2 308 31.8
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 9.2e-23 112.5 286 34.3
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 9.2e-23 112.5 311 32.5
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 6.0e-22 109.8 139 41.7
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.7e-21 108.2 208 39.9
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 1.1e-20 105.5 308 32.1
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 1.1e-20 105.5 337 32.0
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 1.5e-20 105.1 318 31.8
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 7.3e-20 102.8 181 39.8
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 6.2e-19 99.8 88 52.3
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 1.8e-18 98.2 281 31.7
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 4.0e-18 97.1 308 29.2
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.0e-17 94.7 293 31.4
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.6e-17 94.4 114 51.8
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 4.4e-17 93.6 365 29.9
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 7.6e-17 92.8 265 33.2
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 9.9e-17 92.4 354 28.2
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 9.9e-17 92.4 294 31.3
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 1.3e-16 92.0 248 31.9
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.2e-16 91.3 89 49.4
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 4.2e-15 87.0 85 49.4
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 9.3e-15 85.9 265 32.8
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.2e-14 85.5 292 28.4
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 2.1e-14 84.7 175 36.0
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 1.3e-13 82.0 164 34.8
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.1e-12 79.0 182 33.5
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 2.5e-12 77.8 242 30.6
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 2.5e-12 77.8 121 40.5
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 4.3e-12 77.0 237 32.9
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 4.3e-12 77.0 298 25.8
Lsat_1_v5_gn_3_132580 Lactuca sativa HOM05D000186 ORTHO05D004739 4.8e-11 73.6 194 35.6
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.1e-10 72.4 66 59.1
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 1.1e-10 72.4 83 44.6
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 1.1e-10 72.4 62 54.8
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.4e-10 71.2 196 29.6
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 5.3e-10 70.1 230 28.3
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 1.5e-09 68.6 90 47.8
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 1.5e-09 68.6 225 31.6
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 2.0e-09 68.2 225 31.6
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.4e-09 67.4 216 30.6
Lj4A466T15 Lonicera japonica HOM05D004112 ORTHO05D004739 9.3e-07 59.3 103 39.8
Actinidia26737 Actinidia chinensis HOM05D004112 ORTHO05D004739 4.6e-06 57.0 198 29.8


User provided reference genes

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