Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g016170 Solanum pennellii HOM05D007413 ORTHO05D009357 7.6e-50 200.3 108 100.0
Solyc02g066970.1 Solanum lycopersicum HOM05D007413 ORTHO05D009357 2.5e-45 185.3 108 93.5
PGSC0003DMG400025144 Solanum tuberosum HOM05D007413 ORTHO05D009357 2.8e-44 181.8 108 89.8
CAN.G398.10 Capsicum annuum HOM05D007413 ORTHO05D009357 3.1e-19 98.6 90 63.3
Sopen02g033450 Solanum pennellii HOM05D007413 ORTHO05D009357 6.5e-17 90.9 104 54.8
Solyc02g088740.1 Solanum lycopersicum HOM05D007413 ORTHO05D009357 3.2e-16 88.6 104 54.8
CAN.G206.219 Capsicum annuum HOM05D007413 ORTHO05D009357 5.5e-16 87.8 87 58.6
Nitab4.5_0010051g0020 Nicotiana tabacum HOM05D007413 ORTHO05D009357 1.2e-15 86.7 94 55.3
Nitab4.5_0000565g0230 Nicotiana tabacum HOM05D007413 ORTHO05D009357 2.1e-15 85.9 102 54.9
Oeu062157.1 Olea europaea HOM05D007413 ORTHO05D009357 2.7e-15 85.5 108 49.1
Nitab4.5_0005916g0020 Nicotiana tabacum HOM05D007413 ORTHO05D009357 3.0e-14 82.0 85 57.6
Migut.K01283 Erythranthe guttata HOM05D007413 ORTHO05D009357 1.3e-12 76.6 100 52.0
Hma1.2p1_0481F.1_g162070 Hydrangea macrophylla HOM05D007413 ORTHO05D009357 1.3e-12 76.6 120 45.8
Oeu007062.1 Olea europaea HOM05D007413 ORTHO05D009357 3.7e-12 75.1 108 47.2
SalBow1G6503 Salvia bowleyana HOM05D007413 ORTHO05D009357 8.2e-12 73.9 49 65.3
Actinidia26249 Actinidia chinensis HOM05D007413 ORTHO05D009357 7.0e-11 70.9 53 62.3
CSS0009905 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 7.0e-11 70.9 109 44.0
SGA_v2.0_scaffold148G36473 Striga asiatica HOM05D007413 ORTHO05D009357 7.0e-11 70.9 65 58.5
CSS0018085 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 9.1e-11 70.5 109 44.0
Cc07_g04120 Coffea canephora HOM05D007413 ORTHO05D009357 9.1e-11 70.5 108 44.4
Duzib147G0133 Durio zibethinus HOM05D007413 ORTHO05D009357 2.6e-10 68.9 59 57.6
CSS0018963 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 5.9e-10 67.8 112 42.9
Aqoxy3G03598 Aquilegia oxysepala HOM05D007413 ORTHO05D009357 7.7e-10 67.4 105 41.0
COL.COLO4_00052 Corchorus olitorius HOM05D007413 ORTHO05D009357 1.0e-09 67.0 64 54.7
Lj2g0007962 Lotus japonicus HOM05D007413 ORTHO05D009357 1.0e-09 67.0 49 63.3
Thecc.04G093400 Theobroma cacao HOM05D007413 ORTHO05D009357 1.0e-09 67.0 109 39.4
Potri.004G119600 Populus trichocarpa HOM05D007413 ORTHO05D009357 2.2e-09 65.9 84 53.6
Sabra04G0069100 Salix brachista HOM05D007413 ORTHO05D009357 2.2e-09 65.9 54 63.0
Manes.01G097200 Manihot esculenta HOM05D007413 ORTHO05D009357 2.9e-09 65.5 95 42.1
Nn3g17420 Nelumbo nucifera HOM05D007413 ORTHO05D009357 5.0e-09 64.7 89 47.2
CANSAT64G0406 Cannabis sativa HOM05D007413 ORTHO05D009357 8.5e-09 63.9 102 44.1
TPR.G10008 Trifolium pratense HOM05D007413 ORTHO05D009357 8.5e-09 63.9 59 54.2
Lalb_Chr06g0174991 Lupinus albus HOM05D007413 ORTHO05D009357 1.1e-08 63.5 50 62.0
Oeu010247.1 Olea europaea HOM05D007413 ORTHO05D009357 1.1e-08 63.5 98 40.8
Psat1g067640 Pisum sativum HOM05D007413 ORTHO05D009357 1.1e-08 63.5 47 66.0
QL02p067998 Quercus lobata HOM05D007413 ORTHO05D009357 1.1e-08 63.5 89 46.1
Medtr6g015150 Medicago truncatula HOM05D007413 ORTHO05D009357 1.5e-08 63.2 55 54.5
Nn4g23392 Nelumbo nucifera HOM05D007413 ORTHO05D009357 1.5e-08 63.2 95 46.3
Phvul.004G035200 Phaseolus vulgaris HOM05D007413 ORTHO05D009357 1.5e-08 63.2 62 50.0
Migut.H00635 Erythranthe guttata HOM05D007413 ORTHO05D009357 1.9e-08 62.8 101 46.5
Gorai.012G049200 Gossypium raimondii HOM05D007413 ORTHO05D009357 1.9e-08 62.8 56 57.1
Manes.02G054200 Manihot esculenta HOM05D007413 ORTHO05D009357 1.9e-08 62.8 103 41.7
ClCG11G004700 Citrullus lanatus HOM05D007413 ORTHO05D009357 3.2e-08 62.0 102 45.1
Gohir.D04G043900 Gossypium hirsutum HOM05D007413 ORTHO05D009357 3.2e-08 62.0 56 57.1
Cfa007655 Carpinus fangiana HOM05D007413 ORTHO05D009357 4.2e-08 61.6 99 45.5
Lalb_Chr02g0158971 Lupinus albus HOM05D007413 ORTHO05D009357 4.2e-08 61.6 50 62.0
Lsat_1_v5_gn_2_87601 Lactuca sativa HOM05D007413 ORTHO05D009357 5.5e-08 61.2 110 39.1
Potri.017G093000 Populus trichocarpa HOM05D007413 ORTHO05D009357 9.4e-08 60.5 110 41.8
unitig_62.g23378 Utricularia gibba HOM05D007413 ORTHO05D009357 9.4e-08 60.5 101 41.6
Prupe.3G256400 Prunus persica HOM05D007413 ORTHO05D009357 1.6e-07 59.7 65 52.3
TWI34G0597 Tripterygium wilfordii HOM05D007413 ORTHO05D009357 1.6e-07 59.7 88 44.3
Cpa.g.sc3362.1 Carica papaya HOM05D007413 ORTHO05D009357 2.1e-07 59.3 53 56.6
FAN02G2783 Fragaria x ananassa HOM05D007413 ORTHO05D009357 2.1e-07 59.3 61 49.2
Sabra17G0082000 Salix brachista HOM05D007413 ORTHO05D009357 2.1e-07 59.3 103 43.7
VMungo0464G1276 Vigna mungo HOM05D007413 ORTHO05D009357 2.7e-07 58.9 92 42.4
Glyma.13G057000 Glycine max HOM05D007413 ORTHO05D009357 3.6e-07 58.5 102 38.2
Rhsim08G0074700 Rhododendron simsii HOM05D007413 ORTHO05D009357 4.7e-07 58.2 39 74.4
Eucgr.I02025 Eucalyptus grandis HOM05D007413 ORTHO05D009357 8.0e-07 57.4 77 42.9
SalBow1G0329 Salvia bowleyana HOM05D007413 ORTHO05D009357 8.0e-07 57.4 102 38.2
AT3G29370 Arabidopsis thaliana HOM05D007413 ORTHO05D009357 1.4e-06 56.6 92 39.1
Carub.0005s0809 Capsella rubella HOM05D007413 ORTHO05D009357 1.4e-06 56.6 103 34.0
FAN05G2048 Fragaria x ananassa HOM05D007413 ORTHO05D009357 1.4e-06 56.6 61 47.5
Ciclev10013609m.g Citrus clementina HOM05D007413 ORTHO05D009357 1.8e-06 56.2 110 40.9
MD09G1064600 Malus domestica HOM05D007413 ORTHO05D009357 1.8e-06 56.2 105 42.9
ATR0064G025 Amborella trichopoda HOM05D007413 ORTHO05D009357 2.3e-06 55.8 76 47.4
CDE10G0699 Ceratophyllum demersum HOM05D007413 ORTHO05D009357 2.3e-06 55.8 109 35.8
Sc14g0006230 Simmondsia chinensis HOM05D007413 ORTHO05D009357 2.3e-06 55.8 63 52.4
DCAR_011043 Daucus carota HOM05D007413 ORTHO05D009357 3.0e-06 55.5 82 39.0
Gohir.A05G371900 Gossypium hirsutum HOM05D007413 ORTHO05D009357 4.0e-06 55.1 101 39.6
MELO3C022028.2 Cucumis melo HOM05D007413 ORTHO05D009357 6.7e-06 54.3 104 38.5
RcHm_v2.0_Chr2g0166071 Rosa chinensis HOM05D007413 ORTHO05D009357 6.7e-06 54.3 101 41.6
Sed0019528 Sechium edule HOM05D007413 ORTHO05D009357 6.7e-06 54.3 61 52.5
Aa31LG2G3920 Aethionema arabicum HOM05D007413 ORTHO05D009357 8.8e-06 53.9 109 36.7
CiPaw.03G089400 Carya illinoinensis HOM05D007413 ORTHO05D009357 8.8e-06 53.9 97 41.2
MD17G1057900 Malus domestica HOM05D007413 ORTHO05D009357 8.8e-06 53.9 107 41.1


User provided reference genes

Program Settings