Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g015910 Solanum pennellii HOM05D006288 ORTHO05D007416 5.3e-139 497.7 249 100.0
Solyc02g065690.3 Solanum lycopersicum HOM05D006288 ORTHO05D007416 1.9e-56 223.4 115 100.0
PGSC0003DMG400026550 Solanum tuberosum HOM05D006288 ORTHO05D007416 1.8e-54 216.9 115 97.4
Peaxi162Scf00019g00316 Petunia axillaris HOM05D006288 ORTHO05D007416 8.7e-49 198.0 113 92.0
Nitab4.5_0003203g0060 Nicotiana tabacum HOM05D006288 ORTHO05D007416 2.8e-47 193.0 112 91.1
vmacro18118 Vaccinium macrocarpon HOM05D006288 ORTHO05D007416 5.3e-46 188.7 114 84.2
Rhsim10G0068900 Rhododendron simsii HOM05D006288 ORTHO05D007416 2.0e-45 186.8 114 82.5
GSVIVG01036516001 Vitis vinifera HOM05D006288 ORTHO05D007416 7.6e-45 184.9 112 83.0
CSS0015874 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 1.7e-44 183.7 114 80.7
CSS0028097 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 1.7e-44 183.7 114 80.7
Rhsim08G0078400 Rhododendron simsii HOM05D006288 ORTHO05D007416 1.7e-44 183.7 114 81.6
Cc07_g04640 Coffea canephora HOM05D006288 ORTHO05D007416 2.2e-44 183.3 114 81.6
Dinv34894 Davidia involucrata HOM05D006288 ORTHO05D007416 3.8e-44 182.6 116 80.2
Migut.K00879 Erythranthe guttata HOM05D006288 ORTHO05D007416 3.8e-44 182.6 112 83.9
Oeu007090.1 Olea europaea HOM05D006288 ORTHO05D007416 4.9e-44 182.2 112 82.1
Gohir.A12G056700 Gossypium hirsutum HOM05D006288 ORTHO05D007416 1.1e-43 181.0 113 81.4
Hma1.2p1_0304F.1_g119265 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 1.4e-43 180.6 114 79.8
Hma1.2p1_0304F.1_g119270 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 1.4e-43 180.6 114 79.8
Duzib133G0644 Durio zibethinus HOM05D006288 ORTHO05D007416 1.9e-43 180.3 113 80.5
Duzib133G1254 Durio zibethinus HOM05D006288 ORTHO05D007416 1.9e-43 180.3 113 80.5
Gohir.D12G056100 Gossypium hirsutum HOM05D006288 ORTHO05D007416 1.9e-43 180.3 113 81.4
Gorai.008G059200 Gossypium raimondii HOM05D006288 ORTHO05D007416 1.9e-43 180.3 113 81.4
TAR629G2245 Trochodendron aralioides HOM05D006288 ORTHO05D007416 1.9e-43 180.3 114 81.6
Thecc.10G108100 Theobroma cacao HOM05D005170 ORTHO05D007416 2.5e-43 179.9 112 82.1
SGA_v2.0_scaffold30G12393 Striga asiatica HOM05D006288 ORTHO05D007416 7.1e-43 178.3 118 76.3
Manes.01G106000 Manihot esculenta HOM05D006288 ORTHO05D007416 2.7e-42 176.4 111 79.3
Psat5g210920 Pisum sativum HOM05D006288 ORTHO05D007416 1.0e-41 174.5 121 72.7
CSS0029131 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 1.3e-41 174.1 114 77.2
PSO832G2920 Papaver somniferum HOM05D006288 ORTHO05D007416 3.0e-41 172.9 112 78.6
PSO210G6985 Papaver somniferum HOM05D006288 ORTHO05D007416 3.9e-41 172.6 112 77.7
Psat5g210840 Pisum sativum HOM05D006288 ORTHO05D007416 3.9e-41 172.6 121 71.9
Lalb_Chr21g0318141 Lupinus albus HOM05D006288 ORTHO05D007416 5.1e-41 172.2 126 69.0
Prupe.3G247000 Prunus persica HOM05D006288 ORTHO05D007416 6.7e-41 171.8 115 75.7
Hund16253 Selenicereus undatus HOM05D006288 ORTHO05D007416 8.7e-41 171.4 120 72.5
TPR.G14566 Trifolium pratense HOM05D006288 ORTHO05D007416 8.7e-41 171.4 121 71.1
Cfa007713 Carpinus fangiana HOM05D006288 ORTHO05D007416 1.1e-40 171.0 111 78.4
Ca_13697_v3 Cicer arietinum L. HOM05D006288 ORTHO05D007416 1.5e-40 170.6 116 74.1
Phvul.004G044700 Phaseolus vulgaris HOM05D006288 ORTHO05D007416 1.9e-40 170.2 116 74.1
SalBow7G0779 Salvia bowleyana HOM05D006288 ORTHO05D007416 1.9e-40 170.2 112 78.6
Glyma.19G037000 Glycine max HOM05D006288 ORTHO05D007416 2.5e-40 169.9 117 73.5
Lj3g0015520 Lotus japonicus HOM05D006288 ORTHO05D007416 2.5e-40 169.9 117 72.6
Medtr3g034300 Medicago truncatula HOM05D006288 ORTHO05D007416 2.5e-40 169.9 121 70.2
Glyma.13G051400 Glycine max HOM05D006288 ORTHO05D007416 3.3e-40 169.5 117 72.6
CSS0016762 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 5.7e-40 168.7 114 77.2
CSS0047986 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 5.7e-40 168.7 114 77.2
TWI60G1717 Tripterygium wilfordii HOM05D006288 ORTHO05D007416 7.4e-40 168.3 112 75.9
CiPaw.03G081300 Carya illinoinensis HOM05D006288 ORTHO05D007416 9.7e-40 167.9 111 79.3
Sc11g0008960 Simmondsia chinensis HOM05D006288 ORTHO05D007416 9.7e-40 167.9 116 74.1
PGR004G0851 Punica granatum HOM05D006288 ORTHO05D007416 1.3e-39 167.5 115 73.9
Ah.16g100880 Amaranthus hybridus HOM05D006288 ORTHO05D007416 1.6e-39 167.2 112 75.0
VMungo0464G1523 Vigna mungo HOM05D006288 ORTHO05D007416 1.6e-39 167.2 116 72.4
PSO675G0562 Papaver somniferum HOM05D006288 ORTHO05D007416 2.8e-39 166.4 112 76.8
arahy.Tifrunner.gnm1.ann1.J0I6JM Arachis hypogaea HOM05D006288 ORTHO05D007416 3.7e-39 166.0 119 69.7
RcHm_v2.0_Chr2g0164421 Rosa chinensis HOM05D006288 ORTHO05D007416 4.8e-39 165.6 110 73.6
ATR0691G027 Amborella trichopoda HOM05D006288 ORTHO05D007416 6.3e-39 165.2 113 72.6
Cpa.g.sc14.255 Carica papaya HOM05D006288 ORTHO05D007416 8.2e-39 164.9 114 74.6
Manes.02G062500 Manihot esculenta HOM05D006288 ORTHO05D007416 1.1e-38 164.5 110 76.4
CAN.G93.47 Capsicum annuum HOM05D006288 ORTHO05D007416 4.1e-38 162.5 114 76.3
MD09G1077100 Malus domestica HOM05D006288 ORTHO05D007416 4.1e-38 162.5 116 69.0
Psat5g212400 Pisum sativum HOM05D006288 ORTHO05D007416 4.1e-38 162.5 117 69.2
Atru.chr8.595 Acer truncatum HOM05D006288 ORTHO05D007416 6.9e-38 161.8 114 70.2
PSO541G1058 Papaver somniferum HOM05D006288 ORTHO05D007416 6.9e-38 161.8 118 71.2
Lsat_1_v5_gn_4_174040 Lactuca sativa HOM05D006288 ORTHO05D007416 3.4e-37 159.5 111 73.0
QL09p029462 Quercus lobata HOM05D006288 ORTHO05D007416 4.5e-37 159.1 110 73.6
MD17G1067500 Malus domestica HOM05D006288 ORTHO05D007416 1.3e-36 157.5 114 66.7
Eucgr.F02878 Eucalyptus grandis HOM05D006288 ORTHO05D007416 2.2e-36 156.8 113 71.7
Os02g0190900 Oryza sativa ssp. japonica HOM05D006288 ORTHO05D007416 8.5e-36 154.8 112 70.5
THA.LOC104805112 Tarenaya hassleriana HOM05D006288 ORTHO05D007416 7.2e-35 151.8 109 68.8
SEGI_23755 Sequoiadendron giganteum HOM05D006288 ORTHO05D007416 1.2e-34 151.0 117 63.2
HPP92_018391 Vanilla planifolia HOM05D006288 ORTHO05D007416 1.2e-34 151.0 110 69.1
CANSAT64G2264 Cannabis sativa HOM05D005170 ORTHO05D007416 2.1e-34 150.2 115 66.1
Actinidia17612 Actinidia chinensis HOM05D006288 ORTHO05D007416 6.1e-34 148.7 104 75.0
CsaV3_4G009920 Cucumis sativus L. HOM05D006288 ORTHO05D007416 1.0e-33 147.9 115 67.0
FAN10G3625 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.0e-33 147.9 104 71.2
unitig_32.g10759 Utricularia gibba HOM05D006288 ORTHO05D007416 1.0e-33 147.9 115 63.5
Zm00001eb234970 Zea mays HOM05D006288 ORTHO05D007416 2.3e-33 146.7 109 66.1
EL10Ac2g04409 Beta vulgaris HOM05D006288 ORTHO05D007416 5.1e-33 145.6 112 67.0
AUR62023135 Chenopodium quinoa HOM05D006288 ORTHO05D007416 3.3e-32 142.9 115 61.7
Nitab4.5_0002249g0090 Nicotiana tabacum HOM05D006288 ORTHO05D007416 3.3e-32 142.9 76 96.1
FAN10G2886 Fragaria x ananassa HOM05D006288 ORTHO05D007416 8.2e-31 138.3 104 69.2
Nn4g23570 Nelumbo nucifera HOM05D006288 ORTHO05D007416 8.2e-31 138.3 113 65.5
Sabra17G0089200 Salix brachista HOM05D006288 ORTHO05D007416 1.1e-30 137.9 95 72.6
C07p39960 Brassica napus HOM05D006288 ORTHO05D007416 1.4e-30 137.5 104 64.4
BolC7t44529H Brassica oleracea HOM05D006288 ORTHO05D007416 1.4e-30 137.5 104 63.5
BraA06t26742Z Brassica rapa HOM05D006288 ORTHO05D007416 3.1e-30 136.3 104 63.5
Actinidia26277 Actinidia chinensis HOM05D006288 ORTHO05D007416 1.5e-29 134.0 114 60.5
Atru.BG.156.p Acer truncatum HOM05D006288 ORTHO05D007416 2.0e-29 133.7 94 68.1
FAN14G1171 Fragaria x ananassa HOM05D006288 ORTHO05D007416 2.0e-29 133.7 116 61.2
COL.COLO4_00228 Corchorus olitorius HOM05D006288 ORTHO05D007416 4.2e-27 125.9 77 83.1
DCAR_011002 Daucus carota HOM05D006288 ORTHO05D007416 5.5e-27 125.6 78 80.8
Hma1.2p1_2186F.1_g316383 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 7.2e-27 125.2 76 81.6
Hma1.2p1_3488F.1_g336360 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 7.2e-27 125.2 76 81.6
Lsat_1_v5_gn_4_173980 Lactuca sativa HOM05D006288 ORTHO05D007416 7.2e-27 125.2 111 58.6
CDE10G0042 Ceratophyllum demersum HOM05D006288 ORTHO05D007416 2.1e-26 123.6 89 67.4
Potri.017G106200 Populus trichocarpa HOM05D006288 ORTHO05D007416 2.3e-25 120.2 125 52.8
Carub.0008s0943 Capsella rubella HOM05D006288 ORTHO05D007416 5.1e-25 119.0 110 55.5
ECA232G4388 Erigeron canadensis HOM05D006288 ORTHO05D007416 3.3e-24 116.3 111 55.0
TAR371G0310 Trochodendron aralioides HOM05D006288 ORTHO05D007416 4.8e-23 112.5 85 64.7
Aa31LG7G12050 Aethionema arabicum HOM05D006288 ORTHO05D007416 1.1e-22 111.3 112 51.8
FAN09G1057 Fragaria x ananassa HOM05D010582 ORTHO05D007416 1.1e-22 111.3 120 52.5
MELO3C018910.2 Cucumis melo HOM05D006288 ORTHO05D007416 7.0e-22 108.6 115 51.3
FAN02G0987 Fragaria x ananassa HOM05D006288 ORTHO05D007416 9.1e-22 108.2 116 52.6
FAN05G5526 Fragaria x ananassa HOM05D006288 ORTHO05D007416 2.0e-21 107.1 116 52.6
ClCG07G016140 Citrullus lanatus HOM05D006288 ORTHO05D007416 2.6e-21 106.7 111 52.3
Sed0021882 Sechium edule HOM05D006288 ORTHO05D007416 5.9e-21 105.5 83 62.7
HanXRQChr15g0464891 Helianthus annuus HOM05D006288 ORTHO05D007416 2.2e-20 103.6 93 57.0
Mapoly0015s0174 Marchantia polymorpha HOM05D006288 ORTHO05D007416 2.2e-20 103.6 105 46.7
FvH4_6g46100 Fragaria vesca HOM05D006288 ORTHO05D007416 4.2e-19 99.4 71 70.4
Eucgr.K01979 Eucalyptus grandis HOM05D006288 ORTHO05D007416 3.6e-18 96.3 91 62.6
CARHR287980 Cardamine hirsuta HOM05D006288 ORTHO05D007416 6.1e-18 95.5 108 47.2
AagrBONN_evm.TU.Sc2ySwM_344.2644 Anthoceros agrestis HOM05D006288 ORTHO05D007416 1.0e-17 94.7 106 43.4
AL8G23340 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 1.0e-17 94.7 110 45.5
Thhalv10005135m.g Eutrema salsugineum HOM05D006288 ORTHO05D007416 1.0e-17 94.7 74 62.2
FvH4_6g24710 Fragaria vesca HOM05D006288 ORTHO05D007416 1.4e-17 94.4 59 78.0
FAN14G4004 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.4e-17 94.4 59 78.0
Sp2g19860 Schrenkiella parvula HOM05D006288 ORTHO05D007416 2.3e-17 93.6 107 46.7
AL954U10010 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 3.0e-17 93.2 108 46.3
A09p04890 Brassica napus HOM05D006288 ORTHO05D007416 3.0e-17 93.2 73 63.0
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 3.0e-17 93.2 73 63.0
AT5G49550 Arabidopsis thaliana HOM05D006288 ORTHO05D007416 3.9e-17 92.8 110 45.5
BcaC04g23731 Brassica carinata HOM05D006288 ORTHO05D007416 6.7e-17 92.0 71 63.4
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 6.7e-17 92.0 71 63.4
BcaB04g19620 Brassica carinata HOM05D006288 ORTHO05D007416 1.5e-16 90.9 73 60.3
Pp3c21_3840 Physcomitrium patens HOM05D006288 ORTHO05D007416 2.2e-15 87.0 105 44.8
SHI46878 Sapria himalayana HOM05D006288 ORTHO05D007416 3.1e-14 83.2 73 47.9
SMO358G0122 Selaginella moellendorffii HOM05D006288 ORTHO05D007416 5.9e-13 79.0 97 40.2
Psat6g174640 Pisum sativum HOM05D006288 ORTHO05D007416 1.9e-11 73.9 62 59.7
FAN03G1360 Fragaria x ananassa HOM05D006288 ORTHO05D007416 6.7e-09 65.5 53 58.5
Haze_03283 Corylus avellana HOM05D002280 ORTHO05D002322 1.2e-08 64.7 43 74.4
FAN06G1951 Fragaria x ananassa HOM05D006288 ORTHO05D007416 5.3e-06 55.8 104 36.5


User provided reference genes

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