Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g015710 Solanum pennellii HOM05D006999 ORTHO05D008936 0.0e+00 1173.7 654 100.0
Solyc02g065510.1 Solanum lycopersicum HOM05D006999 ORTHO05D008936 0.0e+00 1144.8 654 97.4
PGSC0003DMG400001186 Solanum tuberosum HOM05D006999 ORTHO05D008936 0.0e+00 1140.9 654 97.1
Nitab4.5_0000090g0200 Nicotiana tabacum HOM05D006999 ORTHO05D008936 2.6e-278 961.8 656 84.0
CAN.G93.18 Capsicum annuum HOM05D006999 ORTHO05D008936 2.4e-276 955.3 654 83.5
Nitab4.5_0004292g0030 Nicotiana tabacum HOM05D006999 ORTHO05D008936 3.5e-275 951.4 656 83.5
Peaxi162Scf00019g00154 Petunia axillaris HOM05D006999 ORTHO05D008936 1.2e-246 856.7 658 71.0
MSTRG.15411 Avicennia marina HOM05D006999 ORTHO05D008936 4.2e-220 768.5 650 62.3
Cc05_g07730 Coffea canephora HOM05D006999 ORTHO05D008936 1.2e-219 766.9 652 61.0
Oeu049309.1 Olea europaea HOM05D006999 ORTHO05D008936 7.3e-212 741.1 653 59.6
Oeu049321.1 Olea europaea HOM05D006999 ORTHO05D008936 7.3e-212 741.1 653 59.7
Migut.K00852 Erythranthe guttata HOM05D006999 ORTHO05D008936 1.6e-206 723.4 650 58.5
Dinv39939 Davidia involucrata HOM05D006999 ORTHO05D008936 4.3e-204 715.3 651 58.5
Dinv29387 Davidia involucrata HOM05D006999 ORTHO05D008936 2.1e-203 713.0 626 59.6
SalBow1G0035 Salvia bowleyana HOM05D006999 ORTHO05D008936 4.7e-203 711.8 621 60.1
CSS0009159 Camellia sinensis var. sinensis HOM05D006999 ORTHO05D008936 6.8e-202 708.0 656 57.3
CSS0003698 Camellia sinensis var. sinensis HOM05D006999 ORTHO05D008936 3.4e-201 705.7 656 57.2
DCAR_026261 Daucus carota HOM05D006999 ORTHO05D008936 3.9e-197 692.2 644 59.0
SGA_v2.0_scaffold62G21537 Striga asiatica HOM05D006999 ORTHO05D008936 1.2e-195 687.2 658 55.8
Oeu049317.1 Olea europaea HOM05D006999 ORTHO05D008936 2.9e-184 649.4 549 62.3
QL06p044626 Quercus lobata HOM05D006999 ORTHO05D008936 2.4e-183 646.4 624 55.9
Prupe.7G147200 Prunus persica HOM05D006999 ORTHO05D008936 1.7e-181 640.2 621 61.2
Cpa.g.sc15.132 Carica papaya HOM05D006999 ORTHO05D008936 6.2e-179 631.7 657 52.8
Sc03g0001020 Simmondsia chinensis HOM05D006999 ORTHO05D008936 3.1e-178 629.4 631 60.7
RcHm_v2.0_Chr2g0102951 Rosa chinensis HOM05D006999 ORTHO05D008936 2.0e-177 626.7 630 54.0
ECA232G3871 Erigeron canadensis HOM05D006999 ORTHO05D008936 3.4e-177 625.9 631 59.3
GSVIVG01019040001 Vitis vinifera HOM05D006999 ORTHO05D008936 5.4e-175 618.6 649 51.8
vmacro00136 Vaccinium macrocarpon HOM05D006999 ORTHO05D008936 6.0e-174 615.1 653 59.1
CANSAT01G1763 Cannabis sativa HOM05D006999 ORTHO05D008936 1.3e-173 614.0 646 51.2
Aqoxy6G01000 Aquilegia oxysepala HOM05D006999 ORTHO05D008936 3.9e-173 612.5 630 53.2
CiPaw.01G031400 Carya illinoinensis HOM05D006999 ORTHO05D008936 1.3e-171 607.4 636 52.4
Thecc.01G043300 Theobroma cacao HOM05D006999 ORTHO05D008936 3.6e-171 605.9 651 51.2
Rhsim02G0229300 Rhododendron simsii HOM05D006999 ORTHO05D008936 6.2e-171 605.1 657 57.4
MD15G1270900 Malus domestica HOM05D006999 ORTHO05D008936 9.0e-170 601.3 606 53.5
Phvul.002G025400 Phaseolus vulgaris HOM05D006999 ORTHO05D008936 3.4e-169 599.4 627 58.4
arahy.Tifrunner.gnm1.ann1.ZB5P2M Arachis hypogaea HOM05D006999 ORTHO05D008936 2.2e-168 596.7 623 53.9
FAN23G0790 Fragaria x ananassa HOM05D006999 ORTHO05D008936 2.2e-168 596.7 647 57.5
Gohir.D12G067100 Gossypium hirsutum HOM05D006999 ORTHO05D008936 3.8e-168 595.9 647 50.1
Manes.13G134700 Manihot esculenta HOM05D006999 ORTHO05D008936 3.8e-168 595.9 651 50.5
Gorai.008G070500 Gossypium raimondii HOM05D006999 ORTHO05D008936 8.4e-168 594.7 647 50.1
Lj2g0003627 Lotus japonicus HOM05D006999 ORTHO05D008936 1.9e-167 593.6 654 49.5
Duzib147G0594 Durio zibethinus HOM05D006999 ORTHO05D008936 6.0e-166 588.6 647 49.9
VMungo1215G1670 Vigna mungo HOM05D006999 ORTHO05D008936 6.0e-166 588.6 625 57.9
PSO541G6186 Papaver somniferum HOM05D006999 ORTHO05D008936 7.9e-166 588.2 636 49.8
Lj4P134T41 Lonicera japonica HOM05D006999 ORTHO05D008936 3.9e-165 585.9 512 59.4
Rhsim02G0225000 Rhododendron simsii HOM05D006999 ORTHO05D008936 5.6e-164 582.0 556 55.9
TAR381G1039 Trochodendron aralioides HOM05D006999 ORTHO05D008936 9.6e-164 581.3 654 56.0
Gohir.A12G066700 Gossypium hirsutum HOM05D006999 ORTHO05D008936 4.8e-163 578.9 647 49.3
Sabra05G0104700 Salix brachista HOM05D006999 ORTHO05D008936 6.2e-163 578.6 660 49.4
AUR62008030 Chenopodium quinoa HOM05D006999 ORTHO05D008936 3.1e-162 576.2 651 55.1
Cfa004253 Carpinus fangiana HOM05D006999 ORTHO05D008936 3.4e-161 572.8 642 50.3
Potri.005G128600 Populus trichocarpa HOM05D006999 ORTHO05D008936 2.2e-160 570.1 630 50.3
FvH4_2g07140 Fragaria vesca HOM05D006999 ORTHO05D008936 8.4e-160 568.2 633 49.1
Nn5g29479 Nelumbo nucifera HOM05D006999 ORTHO05D008936 1.6e-158 563.9 644 49.1
Ca_24822_v3 Cicer arietinum L. HOM05D006999 ORTHO05D008936 2.3e-157 560.1 635 48.5
Aa31LG1G15180 Aethionema arabicum HOM05D006999 ORTHO05D008936 6.7e-157 558.5 628 48.9
TWI73G1021 Tripterygium wilfordii HOM05D006999 ORTHO05D008936 3.3e-156 556.2 638 53.3
AT5G66631 Arabidopsis thaliana HOM05D006999 ORTHO05D008936 3.7e-155 552.7 654 48.8
Ah.02g126330 Amaranthus hybridus HOM05D006999 ORTHO05D008936 4.0e-154 549.3 639 53.8
THA.LOC104826827 Tarenaya hassleriana HOM05D006999 ORTHO05D008936 6.9e-154 548.5 657 47.5
CARHR281110 Cardamine hirsuta HOM05D006999 ORTHO05D008936 3.8e-152 542.7 633 49.0
Actinidia36538 Actinidia chinensis HOM05D006999 ORTHO05D008936 4.9e-152 542.3 665 48.0
BcaC06g34726 Brassica carinata HOM05D006999 ORTHO05D008936 2.5e-151 540.0 664 47.3
Thhalv10005592m.g Eutrema salsugineum HOM05D006999 ORTHO05D008936 1.2e-150 537.7 664 47.1
AL8G44870 Arabidopsis lyrata HOM05D006999 ORTHO05D008936 6.0e-150 535.4 654 47.4
Lalb_Chr09g0322731 Lupinus albus HOM05D006999 ORTHO05D008936 1.1e-148 531.2 622 51.3
Sp2g30070 Schrenkiella parvula HOM05D006999 ORTHO05D008936 1.1e-148 531.2 636 47.6
BraA07t29457Z Brassica rapa HOM05D006999 ORTHO05D008936 1.5e-148 530.8 636 47.8
BcaB02g10006 Brassica carinata HOM05D006999 ORTHO05D008936 3.3e-148 529.6 639 47.7
HanXRQChr09g0265111 Helianthus annuus HOM05D006999 ORTHO05D008936 1.6e-147 527.3 642 46.0
A07p17310 Brassica napus HOM05D006999 ORTHO05D008936 1.4e-146 524.2 635 47.7
BolC7t43049H Brassica oleracea HOM05D006999 ORTHO05D008936 2.0e-145 520.4 633 47.7
Medtr5g019030 Medicago truncatula HOM05D006999 ORTHO05D008936 4.5e-145 519.2 629 53.6
Glyma.11G063000 Glycine max HOM05D006999 ORTHO05D008936 5.0e-144 515.8 623 53.3
EL10Ac6g14872 Beta vulgaris HOM05D006999 ORTHO05D008936 1.5e-140 504.2 648 49.8
TPR.G34465 Trifolium pratense HOM05D006999 ORTHO05D008936 4.1e-138 496.1 656 45.1
Eucgr.I02485 Eucalyptus grandis HOM05D006999 ORTHO05D008936 9.1e-138 495.0 627 45.0
FvH4_1g14280 Fragaria vesca HOM05D006999 ORTHO05D008936 2.6e-137 493.4 508 51.6
Carub.0008s2788 Capsella rubella HOM05D006999 ORTHO05D008936 1.2e-134 484.6 510 51.6
MBI16_g10978_MAGBIO Magnolia biondii HOM05D006999 ORTHO05D003554 1.2e-134 484.6 623 50.6
Atru.chr3.494 Acer truncatum HOM05D006999 ORTHO05D008936 4.7e-134 482.6 502 51.4
Hma1.2p1_2980F.1_g331210 Hydrangea macrophylla HOM05D006999 ORTHO05D008936 9.1e-130 468.4 539 49.0
Psat2g162640 Pisum sativum HOM05D006999 ORTHO05D008936 3.4e-129 466.5 627 49.1
C07p25190 Brassica napus HOM05D006999 ORTHO05D008936 1.0e-128 464.9 543 48.3
HPP92_025826 Vanilla planifolia HOM05D006999 ORTHO05D008936 5.0e-128 462.6 635 41.9
Haze_15147 Corylus avellana HOM05D000909 ORTHO05D000928 4.7e-126 456.1 655 43.2
Ciclev10027580m.g Citrus clementina HOM05D006999 ORTHO05D008936 3.0e-125 453.4 636 49.1
RcHm_v2.0_Chr2g0102871 Rosa chinensis HOM05D006999 ORTHO05D008936 9.7e-124 448.4 491 50.9
CDE01G0819 Ceratophyllum demersum HOM05D006999 ORTHO05D008936 3.7e-123 446.4 639 41.5
unitig_748.g8403 Utricularia gibba HOM05D006999 ORTHO05D008936 2.2e-115 420.6 384 56.2
ATR0782G111 Amborella trichopoda HOM05D006999 ORTHO05D008936 5.5e-111 406.0 681 37.4
Os01g0167750 Oryza sativa ssp. japonica HOM05D006999 ORTHO05D008936 1.2e-102 378.3 631 37.1
Dinv18613 Davidia involucrata HOM05D006999 ORTHO05D008936 9.8e-100 368.6 626 39.0
Dinv26229 Davidia involucrata HOM05D006999 ORTHO05D008936 9.8e-100 368.6 626 39.0
Haze_25752 Corylus avellana HOM05D006999 ORTHO05D008936 1.5e-92 344.7 676 35.1
SEGI_35610 Sequoiadendron giganteum HOM05D006999 ORTHO05D008936 2.6e-92 344.0 662 34.7
Zm00001eb123240 Zea mays HOM05D006999 ORTHO05D008936 7.0e-90 335.9 619 36.0
Cfa021547 Carpinus fangiana HOM05D006999 ORTHO05D008936 4.6e-81 306.6 654 35.5
Cfa003411 Carpinus fangiana HOM05D006999 ORTHO05D008936 7.1e-58 229.6 643 29.5
unitig_748.g8404 Utricularia gibba HOM05D006999 ORTHO05D008936 7.6e-52 209.5 236 50.8
Glyma.01G179251 Glycine max HOM05D006999 ORTHO05D008936 8.4e-51 206.1 274 43.1
Glyma.01G179201 Glycine max HOM05D006999 ORTHO05D008936 3.1e-45 187.6 227 68.3
FAN28G3023 Fragaria x ananassa HOM05D006999 ORTHO05D008936 1.2e-44 185.7 178 51.1
COL.COLO4_22153 Corchorus olitorius HOM05D000225 ORTHO05D003554 1.8e-32 145.2 229 38.4
Actinidia12102 Actinidia chinensis HOM05D006999 ORTHO05D008936 6.1e-25 120.2 154 46.8
MD02G1156600 Malus domestica HOM05D006999 ORTHO05D008936 4.5e-20 104.0 153 44.4
HanXRQChr09g0268161 Helianthus annuus HOM05D006999 ORTHO05D008936 8.5e-19 99.8 151 39.7
Aa31LG1G15170 Aethionema arabicum HOM05D000909 ORTHO05D008936 2.7e-17 94.7 149 41.6
Pp3c4_14140 Physcomitrium patens HOM05D006999 ORTHO05D008936 1.4e-13 82.4 175 28.0
Mapoly0001s0055 Marchantia polymorpha HOM05D004079 ORTHO05D005437 5.0e-11 73.9 171 27.5
ATR0003G004 Amborella trichopoda HOM05D002986 ORTHO05D003966 1.0e-08 66.2 153 32.0
AagrBONN_evm.TU.Sc2ySwM_344.143 Anthoceros agrestis HOM05D004079 ORTHO05D008936 1.0e-08 66.2 120 30.8
FvH4_1g14250 Fragaria vesca HOM05D000909 ORTHO05D000928 1.8e-08 65.5 162 30.9
EL10Ac6g14214 Beta vulgaris HOM05D006999 ORTHO05D008936 3.0e-08 64.7 138 30.4
FAN18G2707 Fragaria x ananassa HOM05D002453 ORTHO05D002107 8.8e-08 63.2 235 22.6
Mapoly0026s0011 Marchantia polymorpha HOM05D006999 ORTHO05D008936 1.1e-07 62.8 96 33.3
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 1.1e-07 62.8 206 24.8
Pp3c5_2770 Physcomitrium patens HOM05D061868 ORTHO05D007285 1.5e-07 62.4 157 23.6
Cfa016202 Carpinus fangiana HOM05D000001 ORTHO05D010669 2.0e-07 62.0 115 28.7
FvH4_5g15040 Fragaria vesca HOM05D002453 ORTHO05D002107 2.6e-07 61.6 235 22.1
FAN08G1232 Fragaria x ananassa HOM05D002453 ORTHO05D002107 2.6e-07 61.6 235 22.6
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 2.6e-07 61.6 206 24.3
Psat2g188440 Pisum sativum HOM05D000424 ORTHO05D000355 3.3e-07 61.2 106 34.0
SalBow1G1508 Salvia bowleyana HOM05D006596 ORTHO05D008497 3.3e-07 61.2 406 23.4
SHI10915 Sapria himalayana HOM05D006749 ORTHO05D008352 3.3e-07 61.2 186 27.4
Hma1.2p1_0180F.1_g079710 Hydrangea macrophylla HOM05D002986 ORTHO05D003966 4.4e-07 60.8 176 27.3
Prupe.2G122500 Prunus persica HOM05D000104 ORTHO05D009920 4.4e-07 60.8 232 23.7
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 5.7e-07 60.5 207 24.2
DCAR_021786 Daucus carota HOM05D000424 ORTHO05D002854 5.7e-07 60.5 253 22.5
Peaxi162Scf00675g00062 Petunia axillaris HOM05D006596 ORTHO05D008497 5.7e-07 60.5 361 22.4
Sed0007804 Sechium edule HOM05D006596 ORTHO05D008497 7.4e-07 60.1 406 21.2
HPP92_000532 Vanilla planifolia HOM05D007352 ORTHO05D009389 7.4e-07 60.1 152 27.0
MD01G1088700 Malus domestica HOM05D002391 ORTHO05D003966 9.7e-07 59.7 164 27.4
SEGI_18978 Sequoiadendron giganteum HOM05D007352 ORTHO05D009389 9.7e-07 59.7 116 29.3
Pp3c1_6490 Physcomitrium patens HOM05D006749 ORTHO05D008352 1.3e-06 59.3 140 27.9
Haze_00254 Corylus avellana HOM05D000001 ORTHO05D010669 1.7e-06 58.9 115 28.7
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 2.2e-06 58.5 404 21.5
TWI79G0176 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 2.2e-06 58.5 103 31.1
TWI79G1119 Tripterygium wilfordii HOM05D005362 ORTHO05D000355 2.8e-06 58.2 107 29.9
CAN.G911.26 Capsicum annuum HOM05D006596 ORTHO05D008497 3.7e-06 57.8 156 29.5
Gohir.A12G248000 Gossypium hirsutum HOM05D000001 ORTHO05D010669 3.7e-06 57.8 90 30.0
Gohir.D02G188900 Gossypium hirsutum HOM05D007202 ORTHO05D009125 3.7e-06 57.8 176 27.3
MBI04_g06993_MAGBIO Magnolia biondii HOM05D007352 ORTHO05D009389 3.7e-06 57.8 157 27.4
MSTRG.12369 Avicennia marina HOM05D002391 ORTHO05D003966 4.8e-06 57.4 155 27.7
BraA10t45038Z Brassica rapa HOM05D006596 ORTHO05D008497 4.8e-06 57.4 175 25.7
ClCG04G012320 Citrullus lanatus HOM05D002453 ORTHO05D002107 4.8e-06 57.4 214 23.8
Gorai.008G266900 Gossypium raimondii HOM05D000001 ORTHO05D010669 4.8e-06 57.4 90 30.0
TAR371G0278 Trochodendron aralioides HOM05D002453 ORTHO05D002107 4.8e-06 57.4 206 22.8
BolC3t13510H Brassica oleracea HOM05D007661 ORTHO05D009671 8.2e-06 56.6 157 25.5
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 8.2e-06 56.6 167 24.0
Cc09_g04270 Coffea canephora HOM05D006232 ORTHO05D007746 8.2e-06 56.6 161 29.2
Nitab4.5_0007282g0060 Nicotiana tabacum HOM05D004079 ORTHO05D005437 8.2e-06 56.6 84 32.1
VMungo0251G1276 Vigna mungo HOM05D007661 ORTHO05D009671 8.2e-06 56.6 150 28.0


User provided reference genes

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