Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 0.0e+00 2266.1 1154 100.0
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 0.0e+00 2218.7 1154 97.8
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 0.0e+00 2218.7 1154 97.8
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 0.0e+00 2163.7 1155 95.5
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 0.0e+00 1801.6 1151 80.4
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 0.0e+00 1783.5 1128 80.6
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 0.0e+00 1243.4 870 74.4
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 7.3e-284 981.1 1177 47.8
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 1.2e-281 973.8 1178 47.5
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 1.4e-255 887.1 1172 43.3
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 2.6e-249 866.3 1167 43.9
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 4.5e-249 865.5 1167 43.6
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 7.2e-247 858.2 1178 43.4
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 4.4e-244 849.0 1182 42.4
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 7.4e-244 848.2 1182 42.0
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 1.7e-243 847.0 1155 44.0
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 2.2e-243 846.7 1183 43.0
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 2.8e-243 846.3 1182 43.1
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 4.1e-242 842.4 1182 41.1
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 1.3e-240 837.4 1187 42.2
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 8.5e-240 834.7 1166 42.8
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 4.2e-239 832.4 1169 42.9
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 3.3e-236 822.8 1173 42.3
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 2.6e-228 796.6 1172 41.2
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 5.9e-225 785.4 1164 39.9
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 4.9e-219 765.8 445 88.1
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 1.7e-216 757.3 1177 39.1
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 1.6e-214 750.7 1185 38.8
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 1.6e-214 750.7 1181 39.0
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 2.1e-214 750.4 1153 40.4
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 5.2e-213 745.7 1195 38.7
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 1.8e-210 737.3 1178 38.1
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 8.0e-206 721.8 1180 37.0
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 5.2e-205 719.2 1171 37.8
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 1.5e-204 717.6 1143 38.0
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 3.2e-202 709.9 1216 36.2
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 9.2e-202 708.4 1191 38.0
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 1.6e-201 707.6 1213 36.2
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 2.0e-201 707.2 1187 37.2
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 6.6e-200 702.2 1166 38.3
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 3.6e-198 696.4 1184 36.4
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 1.8e-197 694.1 1172 38.5
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 5.2e-197 692.6 1182 36.7
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 4.4e-196 689.5 1196 36.9
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 7.5e-196 688.7 1169 38.4
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 1.7e-195 687.6 1183 36.9
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 2.2e-195 687.2 1176 37.9
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 4.9e-195 686.0 1157 37.4
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 2.1e-193 680.6 1177 37.3
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 2.7e-193 680.2 1181 38.1
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.0e-192 678.3 1179 38.0
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 1.3e-192 677.9 1169 38.1
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 3.9e-192 676.4 1184 37.2
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 1.5e-191 674.5 1131 37.4
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 6.4e-187 659.1 1176 37.2
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 8.4e-187 658.7 1185 36.8
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 1.9e-186 657.5 1178 37.4
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 5.6e-183 646.0 1260 35.8
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 3.1e-181 640.2 1159 36.4
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 1.2e-180 638.3 1169 34.9
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 2.2e-179 634.0 1169 34.6
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 2.2e-179 634.0 1174 36.2
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 4.9e-179 632.9 1175 35.1
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 8.4e-179 632.1 1177 37.1
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 7.1e-178 629.0 1175 36.4
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 9.3e-178 628.6 1111 36.2
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 2.3e-176 624.0 992 39.5
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 1.9e-175 620.9 1114 37.3
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 2.5e-175 620.5 1168 34.1
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 9.6e-175 618.6 1174 34.8
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 1.5e-172 611.3 1000 38.2
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 2.0e-172 610.9 1170 34.4
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 2.0e-172 610.9 1172 36.0
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 4.2e-170 603.2 1173 35.1
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 1.1e-167 595.1 1165 34.2
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 5.6e-167 592.8 1174 33.7
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 2.1e-166 590.9 1126 35.1
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 4.8e-166 589.7 1160 34.7
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 1.1e-165 588.6 1053 37.2
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 1.8e-165 587.8 1175 33.8
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 9.0e-165 585.5 1164 34.7
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 7.6e-164 582.4 1165 33.6
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 1.3e-163 581.6 1168 33.6
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 3.9e-160 570.1 1167 32.7
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 1.8e-157 561.2 1223 33.2
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 1.0e-155 555.4 1165 33.8
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 1.4e-154 551.6 1175 32.7
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 4.1e-149 533.5 1218 31.7
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 1.3e-147 528.5 921 36.8
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 6.1e-145 519.6 947 36.1
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.0e-139 502.3 993 35.5
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 1.5e-135 488.4 922 33.9
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 4.4e-127 460.3 1266 28.8
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 2.6e-124 451.1 274 86.1
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 1.5e-119 435.3 974 33.2
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 1.8e-117 428.3 676 39.1
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 5.3e-117 426.8 1245 27.8
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 1.1e-90 339.3 1302 25.7
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 2.0e-87 328.6 432 41.9
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 3.3e-82 311.2 1267 25.3
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 6.8e-80 303.5 310 50.0
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 3.4e-79 301.2 1164 25.4
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 1.7e-78 298.9 894 28.4
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 1.1e-74 286.2 320 49.4
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 1.2e-73 282.7 320 49.1
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 2.8e-73 281.6 320 49.1
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.4e-72 278.5 320 46.9
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 4.0e-72 277.7 320 48.1
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 1.2e-71 276.2 800 29.1
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 1.2e-63 249.6 302 46.4
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 5.8e-63 247.3 228 54.4
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 2.2e-62 245.4 314 42.7
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 1.4e-61 242.7 314 42.7
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 9.3e-61 240.0 234 53.0
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 2.7e-60 238.4 890 26.9
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 1.4e-56 226.1 1156 24.2
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 4.9e-54 217.6 354 38.7
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 9.3e-53 213.4 193 55.4
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 7.4e-50 203.8 421 33.5
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 9.6e-50 203.4 176 56.8
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 9.0e-48 196.8 176 56.2
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 6.0e-44 184.1 176 54.0
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 3.0e-43 181.8 176 52.3
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 4.8e-41 174.5 169 53.8
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 1.5e-39 169.5 188 46.8
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 4.1e-32 144.8 358 29.3
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 2.1e-28 132.5 260 34.2
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 2.2e-25 122.5 153 47.7
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 2.6e-23 115.5 445 27.2
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 4.7e-20 104.8 282 29.8
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 3.3e-18 98.6 224 28.6
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 9.7e-18 97.1 492 24.6
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 2.8e-17 95.5 295 28.8
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.6e-15 89.0 125 39.2
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 8.5e-14 84.0 111 43.2
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 3.2e-13 82.0 127 37.0
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.4e-11 76.6 219 27.9
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.1e-08 67.0 88 40.9
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 3.1e-08 65.5 79 48.1
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 4.1e-08 65.1 78 48.7
SHI28140 Sapria himalayana HOM05D004959 ORTHO05D005961 7.0e-08 64.3 64 53.1
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 2.0e-07 62.8 46 58.7
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 2.0e-07 62.8 50 54.0
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 2.6e-07 62.4 107 37.4
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 4.5e-07 61.6 46 56.5


User provided reference genes

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