Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 3.0e-145 518.5 255 100.0
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 6.4e-140 500.7 255 96.5
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 9.4e-115 417.2 262 81.3
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 2.6e-96 355.9 231 72.7
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 3.3e-96 355.5 241 72.6
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 1.3e-95 353.6 244 71.3
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 1.8e-94 349.7 255 68.6
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 3.1e-94 349.0 201 81.1
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 9.1e-94 347.4 260 68.1
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 5.9e-93 344.7 218 75.2
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 7.7e-93 344.4 198 78.8
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.7e-92 343.2 201 78.1
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 5.0e-92 341.7 244 68.4
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 6.5e-92 341.3 240 68.3
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 1.1e-91 340.5 239 68.6
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 1.1e-91 340.5 243 67.9
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 1.5e-91 340.1 230 71.7
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 1.5e-91 340.1 211 75.8
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 1.5e-91 340.1 250 68.0
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 2.5e-91 339.3 264 65.5
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 3.2e-91 339.0 249 69.9
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 4.2e-91 338.6 200 79.5
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 4.2e-91 338.6 200 77.5
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 4.2e-91 338.6 257 68.1
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 5.5e-91 338.2 223 71.3
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 7.2e-91 337.8 251 67.3
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 1.2e-90 337.0 223 73.5
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.1e-90 336.3 256 67.2
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 2.7e-90 335.9 237 69.2
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 6.1e-90 334.7 232 71.1
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 6.1e-90 334.7 253 64.0
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 8.0e-90 334.3 261 65.9
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 1.0e-89 334.0 249 65.5
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 1.8e-89 333.2 224 71.0
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 1.8e-89 333.2 259 64.9
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 1.2e-88 330.5 261 65.1
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.5e-88 330.1 251 67.7
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 2.0e-88 329.7 265 63.8
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 2.0e-88 329.7 260 63.8
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 2.0e-88 329.7 239 66.9
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 2.0e-88 329.7 220 70.9
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 3.4e-88 328.9 203 74.9
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 4.4e-88 328.6 251 65.7
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 4.4e-88 328.6 207 74.4
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 4.4e-88 328.6 251 64.9
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 5.7e-88 328.2 207 73.9
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 5.7e-88 328.2 245 68.2
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 5.7e-88 328.2 255 64.7
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 1.7e-87 326.6 250 64.0
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 1.7e-87 326.6 245 66.9
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 2.2e-87 326.2 241 65.6
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 2.8e-87 325.9 259 65.3
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.8e-87 325.9 207 73.4
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 3.7e-87 325.5 230 69.1
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.8e-87 325.1 256 66.4
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 6.3e-87 324.7 266 69.2
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 8.3e-87 324.3 227 69.6
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 1.4e-86 323.6 256 63.3
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 3.1e-86 322.4 224 70.1
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 3.1e-86 322.4 248 64.1
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 4.1e-86 322.0 253 64.8
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 5.3e-86 321.6 161 92.5
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 7.0e-86 321.2 200 73.0
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 7.0e-86 321.2 211 70.6
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 9.1e-86 320.9 200 72.5
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 1.2e-85 320.5 269 67.3
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 2.0e-85 319.7 243 64.2
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 2.0e-85 319.7 245 67.3
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 3.5e-85 318.9 203 73.9
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 4.5e-85 318.5 256 65.2
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.5e-85 318.5 256 65.2
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 7.7e-85 317.8 240 63.8
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 1.0e-84 317.4 252 64.7
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 1.3e-84 317.0 206 70.9
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 1.3e-84 317.0 245 64.1
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 5.0e-84 315.1 203 70.9
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 5.0e-84 315.1 216 68.5
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 6.5e-84 314.7 264 61.4
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 8.5e-84 314.3 266 62.4
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 1.1e-83 313.9 255 62.7
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 1.9e-83 313.2 240 65.0
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 2.5e-83 312.8 252 64.3
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 4.2e-83 312.0 226 65.5
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 4.2e-83 312.0 196 70.9
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 7.2e-83 311.2 220 67.3
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 1.2e-82 310.5 198 73.2
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 2.7e-82 309.3 253 60.1
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 3.6e-82 308.9 192 74.5
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 6.1e-82 308.1 194 70.6
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 6.1e-82 308.1 194 70.6
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 8.0e-82 307.8 233 63.9
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 4.0e-81 305.4 194 70.1
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 4.0e-81 305.4 194 70.1
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 5.2e-81 305.1 194 71.6
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 6.8e-81 304.7 194 70.1
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 6.8e-81 304.7 192 73.4
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 3.4e-80 302.4 192 72.4
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 7.5e-80 301.2 192 71.9
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 7.5e-80 301.2 206 67.5
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.2e-79 299.7 160 85.0
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 7.0e-78 294.7 157 85.4
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 1.6e-77 293.5 168 77.4
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.6e-77 293.5 189 73.5
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 4.5e-77 292.0 225 66.2
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 2.3e-76 289.7 205 68.3
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 2.3e-76 289.7 232 64.7
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 5.0e-76 288.5 197 68.0
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 5.0e-76 288.5 231 63.2
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 1.5e-75 287.0 200 68.5
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 3.3e-75 285.8 256 60.2
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 9.5e-75 284.3 258 59.3
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 2.8e-74 282.7 249 59.0
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 6.1e-74 281.6 202 68.3
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 4.0e-73 278.9 192 69.3
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 2.6e-72 276.2 254 56.7
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.8e-70 270.0 256 58.6
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 2.4e-70 269.6 159 79.2
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 4.3e-67 258.8 184 62.0
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 1.5e-59 233.8 182 53.8
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 1.2e-58 230.7 243 53.9
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 1.2e-56 224.2 148 70.9
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 6.6e-52 208.4 238 44.1
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 1.5e-51 207.2 129 67.4
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 7.3e-51 204.9 192 56.2
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.9e-47 193.0 103 81.6
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.7e-45 186.4 152 63.2
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 5.1e-44 182.2 102 78.4
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 1.2e-37 161.0 108 66.7
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.4e-33 147.5 123 61.0
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 2.6e-32 143.3 100 67.0
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 2.4e-30 136.7 91 68.1
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.7e-28 130.6 101 62.4
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.3e-27 125.9 197 38.6
Sopen08g016900 Solanum pennellii HOM05D004917 ORTHO05D005954 5.8e-24 115.5 71 87.3
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 3.8e-23 112.8 159 37.7
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 1.9e-22 110.5 156 44.9
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 7.1e-22 108.6 221 31.7
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 3.5e-21 106.3 69 75.4
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 3.5e-21 106.3 232 31.0
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 4.6e-21 105.9 193 32.1
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 4.6e-21 105.9 232 30.6
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 4.3e-19 99.4 232 29.3
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 8.1e-18 95.1 176 33.5
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 2.4e-17 93.6 53 79.2
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 6.9e-17 92.0 140 40.0
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 9.0e-17 91.7 89 58.4
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 5.8e-16 89.0 145 35.2
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 1.7e-15 87.4 174 32.8
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 4.9e-15 85.9 172 29.7
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 7.9e-13 78.6 132 33.3
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 2.3e-12 77.0 208 26.9
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 3.3e-11 73.2 55 61.8
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 4.1e-09 66.2 102 45.1
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 9.0e-09 65.1 37 75.7
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 4.5e-08 62.8 110 34.5
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 1.0e-07 61.6 128 37.5
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 2.2e-07 60.5 115 33.9


User provided reference genes

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