Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 8.9e-128 460.3 235 100.0
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 5.8e-127 457.6 235 99.1
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 4.7e-121 438.0 235 95.7
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 2.7e-108 395.6 235 86.4
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 7.8e-100 367.5 235 80.0
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.3e-91 340.1 235 75.7
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 9.6e-90 334.0 235 73.6
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 1.2e-84 317.0 235 70.2
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.1e-82 310.5 235 68.9
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.5e-82 309.3 236 69.5
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 1.2e-76 290.4 263 62.0
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.6e-76 290.0 225 68.0
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 5.1e-75 285.0 207 69.6
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 4.3e-74 282.0 211 64.9
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 5.7e-74 281.6 217 65.4
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 7.4e-74 281.2 207 68.1
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.8e-73 279.3 205 67.8
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 3.7e-73 278.9 201 69.7
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 6.3e-73 278.1 225 64.0
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 2.4e-72 276.2 211 65.9
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 6.9e-72 274.6 222 64.9
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 6.9e-72 274.6 221 62.9
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 1.5e-71 273.5 224 62.9
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 3.4e-71 272.3 235 60.9
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 4.5e-71 271.9 207 67.1
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 4.5e-71 271.9 217 65.4
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.7e-70 270.0 221 62.0
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.4e-69 266.9 230 61.7
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 5.5e-69 265.0 208 63.0
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 9.3e-69 264.2 183 70.5
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 4.6e-68 261.9 212 62.7
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 4.6e-68 261.9 221 60.2
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 4.6e-68 261.9 221 60.2
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 7.9e-68 261.2 221 60.2
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 1.9e-66 256.5 229 60.7
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 1.9e-66 256.5 180 70.0
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 1.9e-66 256.5 188 69.7
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 2.5e-66 256.1 230 60.0
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 2.5e-66 256.1 220 61.8
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 4.3e-66 255.4 222 59.5
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 7.4e-66 254.6 207 61.4
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.3e-65 253.8 156 79.5
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.3e-65 253.8 201 62.7
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.6e-65 253.4 186 68.3
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 2.8e-65 252.7 219 60.7
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 3.7e-65 252.3 152 78.3
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 3.7e-65 252.3 152 78.9
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 3.7e-65 252.3 222 58.6
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 4.8e-65 251.9 220 59.1
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 8.2e-65 251.1 211 60.7
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 1.1e-64 250.8 223 59.6
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 1.1e-64 250.8 231 59.7
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 1.4e-64 250.4 208 63.9
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 2.4e-64 249.6 229 57.6
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 2.4e-64 249.6 211 59.7
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 3.1e-64 249.2 221 57.5
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 4.1e-64 248.8 230 58.3
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 5.3e-64 248.4 179 67.6
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 6.9e-64 248.1 229 58.1
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 6.9e-64 248.1 205 60.0
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 6.9e-64 248.1 200 62.0
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 9.0e-64 247.7 173 70.5
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 9.0e-64 247.7 173 70.5
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 9.0e-64 247.7 182 68.1
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 2.0e-63 246.5 221 57.5
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 2.6e-63 246.1 180 67.8
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 3.4e-63 245.7 207 60.4
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 5.9e-63 245.0 182 67.6
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 7.7e-63 244.6 188 63.8
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 1.0e-62 244.2 216 60.2
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.0e-62 244.2 197 61.9
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.0e-62 244.2 229 59.8
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 1.3e-62 243.8 150 77.3
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 1.3e-62 243.8 176 69.3
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 1.3e-62 243.8 176 69.3
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 1.3e-62 243.8 176 69.3
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 1.3e-62 243.8 208 60.6
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.3e-62 243.8 207 62.3
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 1.7e-62 243.4 178 69.7
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 2.9e-62 242.7 224 56.7
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 3.8e-62 242.3 200 59.0
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 3.8e-62 242.3 200 59.0
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 3.8e-62 242.3 188 63.8
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 5.0e-62 241.9 188 64.4
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 5.0e-62 241.9 201 60.7
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 5.0e-62 241.9 221 58.8
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 6.5e-62 241.5 214 57.9
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 8.5e-62 241.1 150 77.3
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 8.5e-62 241.1 207 60.9
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 1.1e-61 240.7 215 60.0
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 1.4e-61 240.4 146 78.8
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.4e-61 240.4 207 61.8
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 1.9e-61 240.0 183 62.8
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 2.5e-61 239.6 207 58.0
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 2.5e-61 239.6 204 60.8
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.5e-61 239.6 222 56.8
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 3.2e-61 239.2 207 60.9
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 3.2e-61 239.2 216 58.8
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 4.2e-61 238.8 203 58.6
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 4.2e-61 238.8 224 58.0
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 5.5e-61 238.4 211 59.7
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 5.5e-61 238.4 207 56.5
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.6e-60 236.9 220 58.6
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 2.7e-60 236.1 167 70.1
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 3.6e-60 235.7 229 54.1
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 4.6e-60 235.3 196 61.2
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 7.9e-60 234.6 195 60.0
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 3.0e-59 232.6 255 51.4
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 3.0e-59 232.6 242 55.4
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 5.1e-59 231.9 206 58.3
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 5.1e-59 231.9 207 55.1
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 6.7e-59 231.5 240 54.2
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 1.1e-58 230.7 179 62.6
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 1.1e-58 230.7 144 75.0
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 2.0e-58 229.9 193 60.6
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 7.4e-58 228.0 162 67.3
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 9.7e-58 227.6 141 76.6
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 1.4e-56 223.8 187 59.4
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 2.6e-55 219.5 186 57.5
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 2.9e-54 216.1 174 59.8
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 5.0e-54 215.3 177 63.8
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 6.1e-52 208.4 150 62.0
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 1.1e-50 204.1 128 73.4
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 2.8e-49 199.5 160 63.1
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 5.9e-47 191.8 160 56.9
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 5.0e-46 188.7 169 58.0
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 1.5e-45 187.2 171 61.4
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.5e-45 187.2 184 53.3
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 2.1e-44 183.3 218 47.2
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.0e-43 181.0 199 49.7
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.5e-42 177.2 163 53.4
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 2.0e-42 176.8 160 61.2
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 2.0e-42 176.8 139 55.4
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 9.7e-42 174.5 217 46.5
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 2.4e-40 169.9 142 60.6
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 1.2e-39 167.5 174 54.0
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 2.2e-38 163.3 215 44.7
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 5.2e-35 152.1 127 63.8
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 3.4e-34 149.4 179 46.4
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 7.5e-34 148.3 146 54.8
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 1.7e-33 147.1 156 55.1
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 3.5e-31 139.4 223 40.8
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 2.0e-26 123.6 162 46.3
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.5e-21 107.5 79 60.8
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 1.2e-20 104.4 167 34.7
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.6e-20 104.0 154 45.5
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.4e-19 100.9 146 37.7
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 1.7e-17 94.0 131 37.4
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.9e-15 85.5 89 52.8
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 3.9e-14 82.8 144 35.4
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 4.3e-13 79.3 154 31.8
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.0e-11 74.7 122 32.8
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 3.1e-11 73.2 163 32.5
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 7.5e-10 68.6 83 47.0
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 1.3e-09 67.8 197 26.9
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.4e-08 64.3 83 51.8


User provided reference genes

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