Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 1.6e-167 592.8 323 100.0
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 5.8e-162 574.3 324 97.5
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 1.6e-148 529.6 327 86.9
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 2.5e-125 452.6 344 73.8
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.4e-112 410.2 329 71.7
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.3e-94 349.7 335 61.2
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 3.8e-89 332.4 344 58.4
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 7.2e-88 328.2 257 72.8
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 1.2e-85 320.9 333 59.2
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 2.4e-83 313.2 335 57.6
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 1.6e-82 310.5 337 59.1
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 4.3e-80 302.4 322 56.2
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 2.8e-79 299.7 244 68.0
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 1.8e-78 297.0 316 53.8
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 3.2e-75 286.2 322 55.0
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 3.2e-75 286.2 320 56.2
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 4.1e-75 285.8 318 52.8
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 1.6e-74 283.9 320 55.0
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 1.7e-73 280.4 324 56.8
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 1.7e-73 280.4 319 53.0
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 3.0e-73 279.6 226 65.5
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 5.0e-73 278.9 313 55.6
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 1.1e-72 277.7 302 57.6
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 1.1e-72 277.7 327 53.8
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 7.3e-72 275.0 318 52.5
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 1.2e-71 274.2 322 53.1
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 2.1e-71 273.5 318 56.6
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 6.2e-71 271.9 303 54.1
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 8.0e-71 271.6 317 51.7
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 8.0e-71 271.6 317 51.7
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 1.4e-70 270.8 226 62.8
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 5.2e-70 268.9 224 67.4
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 5.2e-70 268.9 318 50.0
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 1.5e-69 267.3 217 65.9
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 3.4e-69 266.2 232 62.9
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 5.8e-69 265.4 330 49.4
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 7.5e-69 265.0 316 57.3
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 7.5e-69 265.0 340 50.9
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 9.8e-69 264.6 318 56.0
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 1.3e-68 264.2 318 56.0
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.7e-68 263.8 320 49.4
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 2.2e-68 263.5 318 55.7
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 2.9e-68 263.1 319 51.1
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 3.7e-68 262.7 320 50.0
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 4.9e-68 262.3 321 48.9
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 8.3e-68 261.5 227 65.6
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 1.4e-67 260.8 230 61.3
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 1.4e-67 260.8 320 48.8
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 4.1e-67 259.2 307 53.1
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 5.4e-67 258.8 328 54.3
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 7.0e-67 258.5 222 64.4
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 9.2e-67 258.1 322 51.9
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 2.7e-66 256.5 324 50.0
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 3.5e-66 256.1 238 63.9
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 4.6e-66 255.8 312 55.8
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 4.6e-66 255.8 320 49.4
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 4.6e-66 255.8 210 64.8
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 6.0e-66 255.4 318 49.7
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 2.3e-65 253.4 332 48.5
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 3.9e-65 252.7 325 56.3
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 5.0e-65 252.3 310 50.0
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 6.6e-65 251.9 318 50.6
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 1.1e-64 251.1 322 49.4
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 7.3e-64 248.4 304 51.0
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 1.2e-63 247.7 301 53.2
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 1.6e-63 247.3 314 48.4
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 1.6e-63 247.3 324 48.5
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 4.7e-63 245.7 328 54.3
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.1e-62 244.6 320 48.8
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 2.3e-62 243.4 322 52.8
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 4.0e-62 242.7 360 48.3
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 4.0e-62 242.7 319 47.0
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 4.0e-62 242.7 320 48.4
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 5.2e-62 242.3 319 47.0
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 6.8e-62 241.9 343 47.8
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 6.8e-62 241.9 319 48.3
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 7.5e-61 238.4 222 64.0
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 2.9e-60 236.5 320 47.5
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 1.4e-59 234.2 263 53.6
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 3.2e-59 233.0 348 47.4
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 3.2e-59 233.0 323 47.7
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 5.4e-59 232.3 319 53.3
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 5.4e-59 232.3 248 55.6
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 5.4e-59 232.3 322 48.4
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 1.6e-58 230.7 308 49.0
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 3.5e-58 229.6 320 45.9
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 2.3e-57 226.9 314 48.1
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 3.9e-57 226.1 307 49.8
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 6.6e-57 225.3 344 46.2
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 1.9e-56 223.8 309 45.0
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 1.9e-56 223.8 248 55.6
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 3.3e-56 223.0 323 46.7
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 4.3e-56 222.6 308 47.7
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.2e-55 221.1 325 47.1
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.6e-55 220.7 323 46.4
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.1e-55 220.3 325 46.5
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 4.7e-55 219.2 325 45.2
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 6.2e-55 218.8 312 49.4
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 1.5e-53 214.2 308 45.1
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 2.6e-53 213.4 319 43.9
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 9.9e-53 211.5 241 56.0
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 1.1e-51 208.0 327 50.2
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 7.1e-51 205.3 320 49.7
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 7.1e-51 205.3 234 54.7
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 7.1e-51 205.3 305 46.9
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 1.2e-50 204.5 234 54.7
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.6e-50 204.1 257 54.9
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 2.7e-50 203.4 234 55.6
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 3.5e-50 203.0 241 53.1
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 2.3e-49 200.3 234 50.9
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 2.3e-49 200.3 338 45.9
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 2.3e-49 200.3 243 50.6
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 6.6e-49 198.7 303 46.9
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 8.7e-49 198.4 312 43.6
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 8.7e-49 198.4 355 42.0
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.1e-48 198.0 175 59.4
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.5e-48 197.6 237 55.3
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 2.5e-48 196.8 336 45.8
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 4.3e-48 196.1 314 48.4
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 5.6e-48 195.7 338 45.6
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 5.6e-48 195.7 234 53.0
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 5.6e-48 195.7 234 53.0
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 5.6e-48 195.7 237 54.9
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 1.2e-47 194.5 238 53.8
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 1.2e-47 194.5 336 45.5
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 1.2e-47 194.5 310 42.6
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 1.6e-47 194.1 337 47.5
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 8.1e-47 191.8 237 53.2
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 3.1e-46 189.9 260 47.3
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 4.4e-45 186.0 304 42.4
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 7.6e-45 185.3 233 51.5
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 7.6e-45 185.3 233 51.5
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 2.9e-44 183.3 227 52.4
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 8.4e-44 181.8 229 50.7
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.9e-43 180.6 220 54.1
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 2.4e-43 180.3 232 53.0
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 7.1e-43 178.7 228 52.2
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.6e-42 177.6 305 43.3
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 1.0e-41 174.9 249 49.4
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 1.3e-41 174.5 235 48.5
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 3.6e-39 166.4 169 53.8
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 6.9e-38 162.2 224 47.8
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 4.5e-37 159.5 309 39.2
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 9.9e-37 158.3 330 38.5
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 3.8e-36 156.4 269 41.3
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 2.7e-34 150.2 180 49.4
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 3.5e-34 149.8 248 44.0
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 4.6e-34 149.4 102 70.6
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 7.9e-34 148.7 220 45.5
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 1.0e-33 148.3 220 45.5
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 3.9e-33 146.4 307 37.5
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 6.7e-33 145.6 220 45.0
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 8.7e-33 145.2 220 45.0
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 3.7e-31 139.8 296 37.5
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 2.0e-29 134.0 102 69.6
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 3.4e-29 133.3 254 39.4
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 1.3e-28 131.3 244 38.5
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 2.5e-24 117.1 200 40.5
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 2.5e-24 117.1 152 51.3
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 7.6e-21 105.5 174 44.8
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 1.9e-16 90.9 63 77.8
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 2.2e-15 87.4 66 62.1


User provided reference genes

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