Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g013800 Solanum pennellii HOM05D006100 ORTHO05D007539 2.7e-62 241.9 126 100.0
Solyc02g062770.2 Solanum lycopersicum HOM05D006100 ORTHO05D007539 1.0e-58 229.9 125 96.8
PGSC0003DMG400015478 Solanum tuberosum HOM05D006100 ORTHO05D007539 3.4e-49 198.4 122 86.1
Nitab4.5_0003233g0010 Nicotiana tabacum HOM05D006100 ORTHO05D007539 1.2e-38 163.3 130 71.5
Nitab4.5_0000136g0440 Nicotiana tabacum HOM05D006100 ORTHO05D007539 2.1e-35 152.5 160 59.4
Peaxi162Scf00515g00519 Petunia axillaris HOM05D006100 ORTHO05D007539 3.9e-29 131.7 126 57.9
Nitab4.5_0001385g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 7.3e-28 127.5 128 60.2
Nitab4.5_0000434g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 4.0e-26 121.7 128 57.8
Peaxi162Scf00008g03716 Petunia axillaris HOM05D006100 ORTHO05D007539 2.6e-25 119.0 126 56.3
CAN.G358.97 Capsicum annuum HOM05D006100 ORTHO05D007539 4.9e-24 114.8 129 54.3
Sopen02g030020 Solanum pennellii HOM05D006100 ORTHO05D007539 2.1e-19 99.4 127 52.8
SGA_v2.0_scaffold276G46633 Striga asiatica HOM05D006100 ORTHO05D007539 1.8e-18 96.3 146 49.3
Actinidia19182 Actinidia chinensis HOM05D006100 ORTHO05D007539 2.4e-18 95.9 126 48.4
Gohir.A10G094900 Gossypium hirsutum HOM05D006100 ORTHO05D007539 3.4e-17 92.0 121 51.2
COL.COLO4_22086 Corchorus olitorius HOM05D006100 ORTHO05D007539 4.4e-17 91.7 121 48.8
Sed0016253 Sechium edule HOM05D006100 ORTHO05D007539 4.4e-17 91.7 134 44.8
HanXRQChr11g0324821 Helianthus annuus HOM05D006100 ORTHO05D007539 5.8e-17 91.3 94 58.5
Oeu009416.1 Olea europaea HOM05D006100 ORTHO05D007539 7.6e-17 90.9 115 48.7
Haze_15098 Corylus avellana HOM05D006100 ORTHO05D007539 1.3e-16 90.1 116 47.4
Oeu041448.1 Olea europaea HOM05D006100 ORTHO05D007539 1.3e-16 90.1 115 47.8
Solyc02g085330.1 Solanum lycopersicum HOM05D006100 ORTHO05D007539 2.9e-16 89.0 105 56.2
ClCG01G019510 Citrullus lanatus HOM05D006100 ORTHO05D007539 1.1e-15 87.0 135 44.4
Dinv39980 Davidia involucrata HOM05D006100 ORTHO05D007539 1.1e-15 87.0 131 46.6
Lsat_1_v5_gn_4_148381 Lactuca sativa HOM05D006100 ORTHO05D007539 1.9e-15 86.3 96 52.1
MD15G1262900 Malus domestica HOM05D006100 ORTHO05D007539 2.4e-15 85.9 135 43.7
Prupe.7G153900 Prunus persica HOM05D006100 ORTHO05D007539 2.4e-15 85.9 108 49.1
Thecc.01G036600 Theobroma cacao HOM05D006100 ORTHO05D007539 3.2e-15 85.5 124 49.2
ECA232G0790 Erigeron canadensis HOM05D006100 ORTHO05D007539 4.2e-15 85.1 101 53.5
Duzib147G1001 Durio zibethinus HOM05D006100 ORTHO05D007539 5.4e-15 84.7 118 44.9
CSS0018588 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 9.3e-15 84.0 132 44.7
THA.LOC104821276 Tarenaya hassleriana HOM05D006100 ORTHO05D007539 9.3e-15 84.0 128 44.5
TWI09G0021 Tripterygium wilfordii HOM05D006100 ORTHO05D007539 9.3e-15 84.0 114 48.2
Cfa004303 Carpinus fangiana HOM05D006100 ORTHO05D007539 2.1e-14 82.8 126 46.8
FvH4_1g13390 Fragaria vesca HOM05D006100 ORTHO05D007539 2.1e-14 82.8 118 44.1
FAN19G3207 Fragaria x ananassa HOM05D006100 ORTHO05D007539 2.1e-14 82.8 118 44.1
MSTRG.2759 Avicennia marina HOM05D006100 ORTHO05D007539 3.5e-14 82.0 136 41.9
Gohir.D10G093000 Gossypium hirsutum HOM05D006100 ORTHO05D007539 3.5e-14 82.0 123 48.0
VMungo1215G0978 Vigna mungo HOM05D006100 ORTHO05D007539 4.6e-14 81.6 109 46.8
Ciclev10026748m.g Citrus clementina HOM05D006100 ORTHO05D007539 6.0e-14 81.3 123 45.5
CsaV3_6G046200 Cucumis sativus L. HOM05D006100 ORTHO05D007539 3.0e-13 79.0 135 43.7
AT5G66780 Arabidopsis thaliana HOM05D006100 ORTHO05D007539 5.1e-13 78.2 125 44.8
Lj2g0016254 Lotus japonicus HOM05D006100 ORTHO05D007539 5.1e-13 78.2 129 45.0
FAN28G1903 Fragaria x ananassa HOM05D006100 ORTHO05D007539 6.6e-13 77.8 118 41.5
QL06p045927 Quercus lobata HOM05D006100 ORTHO05D007539 8.7e-13 77.4 132 44.7
Phvul.002G029900 Phaseolus vulgaris HOM05D006100 ORTHO05D007539 1.1e-12 77.0 111 46.8
FAN23G1739 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.9e-12 76.3 131 43.5
Lalb_Chr09g0322441 Lupinus albus HOM05D006100 ORTHO05D007539 2.5e-12 75.9 103 44.7
EL10Ac6g15568 Beta vulgaris HOM05D006100 ORTHO05D007539 3.3e-12 75.5 130 44.6
arahy.Tifrunner.gnm1.ann1.L1JEHI Arachis hypogaea HOM05D006100 ORTHO05D007539 4.3e-12 75.1 135 40.7
Migut.H00995 Erythranthe guttata HOM05D006100 ORTHO05D007539 4.3e-12 75.1 131 47.3
GSVIVG01018974001 Vitis vinifera HOM05D006100 ORTHO05D007539 4.3e-12 75.1 117 43.6
AL8G44670 Arabidopsis lyrata HOM05D006100 ORTHO05D007539 5.6e-12 74.7 87 52.9
Rhsim08G0115500 Rhododendron simsii HOM05D006100 ORTHO05D007539 9.6e-12 73.9 135 41.5
RcHm_v2.0_Chr2g0101751 Rosa chinensis HOM05D006100 ORTHO05D007539 1.3e-11 73.6 118 39.8
BcaB07g29655 Brassica carinata HOM05D006100 ORTHO05D007539 1.6e-11 73.2 87 52.9
RcHm_v2.0_Chr2g0101741 Rosa chinensis HOM05D006100 ORTHO05D007539 1.6e-11 73.2 132 38.6
Nn5g29589 Nelumbo nucifera HOM05D006100 ORTHO05D007539 2.1e-11 72.8 127 39.4
CARHR280920 Cardamine hirsuta HOM05D006100 ORTHO05D007539 2.8e-11 72.4 122 45.1
Psat2g159960 Pisum sativum HOM05D006100 ORTHO05D007539 2.8e-11 72.4 104 44.2
Carub.0008s2773 Capsella rubella HOM05D006100 ORTHO05D007539 3.6e-11 72.0 96 49.0
Glyma.11G067900 Glycine max HOM05D006100 ORTHO05D007539 3.6e-11 72.0 124 41.9
Medtr5g020060 Medicago truncatula HOM05D006100 ORTHO05D007539 3.6e-11 72.0 125 41.6
Sp2g29900 Schrenkiella parvula HOM05D006100 ORTHO05D007539 3.6e-11 72.0 125 44.0
PGR119G0418 Punica granatum HOM05D006100 ORTHO05D007539 4.8e-11 71.6 128 42.2
PGR102G3048 Punica granatum HOM05D006100 ORTHO05D007539 1.1e-10 70.5 88 53.4
Aa31LG1G15340 Aethionema arabicum HOM05D006100 ORTHO05D007539 1.8e-10 69.7 68 57.4
arahy.Tifrunner.gnm1.ann1.IKK69W Arachis hypogaea HOM05D006100 ORTHO05D007539 2.4e-10 69.3 135 39.3
BcaB02g09991 Brassica carinata HOM05D006100 ORTHO05D007539 2.4e-10 69.3 66 60.6
A02p44400 Brassica napus HOM05D006100 ORTHO05D007539 2.4e-10 69.3 97 44.3
BraA02t09357Z Brassica rapa HOM05D006100 ORTHO05D007539 2.4e-10 69.3 97 44.3
Thhalv10005154m.g Eutrema salsugineum HOM05D006100 ORTHO05D007539 2.4e-10 69.3 79 54.4
FvH4_1g13380 Fragaria vesca HOM05D006100 ORTHO05D007539 2.4e-10 69.3 133 39.8
BcaC06g34744 Brassica carinata HOM05D006100 ORTHO05D007539 4.0e-10 68.6 86 48.8
C07p25000 Brassica napus HOM05D006100 ORTHO05D007539 4.0e-10 68.6 86 48.8
MD02G1148700 Malus domestica HOM05D006100 ORTHO05D007539 4.0e-10 68.6 122 38.5
BolC7t43033H Brassica oleracea HOM05D006100 ORTHO05D007539 5.3e-10 68.2 86 48.8
FAN26G0501 Fragaria x ananassa HOM05D006100 ORTHO05D007539 5.3e-10 68.2 129 39.5
Oeu033643.1 Olea europaea HOM05D006100 ORTHO05D007539 5.3e-10 68.2 50 76.0
Atru.chr3.567 Acer truncatum HOM05D006100 ORTHO05D007539 6.9e-10 67.8 120 39.2
FAN19G2702 Fragaria x ananassa HOM05D006100 ORTHO05D007539 6.9e-10 67.8 133 39.1
MD02G1148600 Malus domestica HOM05D006100 ORTHO05D007539 6.9e-10 67.8 108 44.4
A07p17150 Brassica napus HOM05D006100 ORTHO05D007539 1.2e-09 67.0 86 47.7
BraA07t29442Z Brassica rapa HOM05D006100 ORTHO05D007539 1.2e-09 67.0 86 47.7
Cpa.g.sc6.110 Carica papaya HOM05D006100 ORTHO05D007539 1.2e-09 67.0 132 43.2
CiPaw.01G037400 Carya illinoinensis HOM05D006100 ORTHO05D007539 1.2e-09 67.0 107 43.9
MELO3C007824.2 Cucumis melo HOM05D006100 ORTHO05D007539 1.2e-09 67.0 105 42.9
Duzib264G0645 Durio zibethinus HOM05D006100 ORTHO05D007539 1.2e-09 67.0 79 54.4
FAN23G0264 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.2e-09 67.0 95 46.3
BcaC03g18400 Brassica carinata HOM05D006100 ORTHO05D007539 1.5e-09 66.6 70 55.7
C02p64790 Brassica napus HOM05D006100 ORTHO05D007539 1.5e-09 66.6 62 59.7
BolC2t12540H Brassica oleracea HOM05D006100 ORTHO05D007539 1.5e-09 66.6 62 59.7
PSO675G2321 Papaver somniferum HOM05D006100 ORTHO05D007539 1.5e-09 66.6 145 37.9
Aqoxy6G01099 Aquilegia oxysepala HOM05D006100 ORTHO05D007539 2.0e-09 66.2 116 38.8
Gorai.011G102200 Gossypium raimondii HOM05D006100 ORTHO05D007539 2.0e-09 66.2 82 48.8
PSO541G1538 Papaver somniferum HOM05D006100 ORTHO05D007539 2.6e-09 65.9 147 38.8
CSS0029658 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 3.4e-09 65.5 110 41.8
AUR62004046 Chenopodium quinoa HOM05D006100 ORTHO05D007539 5.8e-09 64.7 84 50.0
Gohir.A11G184500 Gossypium hirsutum HOM05D006100 ORTHO05D007539 7.6e-09 64.3 100 44.0
vmacro17841 Vaccinium macrocarpon HOM05D006100 ORTHO05D007539 1.3e-08 63.5 75 54.7
CiPaw.02G017200 Carya illinoinensis HOM05D006100 ORTHO05D007539 1.7e-08 63.2 88 45.5
AUR62007561 Chenopodium quinoa HOM05D006100 ORTHO05D007539 1.7e-08 63.2 84 51.2
Eucgr.I02450 Eucalyptus grandis HOM05D006100 ORTHO05D007539 1.7e-08 63.2 93 50.5
FAN28G0382 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.7e-08 63.2 62 58.1
FAN26G1330 Fragaria x ananassa HOM05D006100 ORTHO05D007539 2.9e-08 62.4 65 53.8
MD15G1262800 Malus domestica HOM05D006100 ORTHO05D007539 2.9e-08 62.4 68 51.5
Manes.01G135000 Manihot esculenta HOM05D006100 ORTHO05D007539 3.8e-08 62.0 75 49.3
CANSAT01G1084 Cannabis sativa HOM05D006100 ORTHO05D007539 6.4e-08 61.2 129 38.8
unitig_899.g14492 Utricularia gibba HOM05D006100 ORTHO05D007539 6.4e-08 61.2 82 47.6
Os03g0723400 Oryza sativa ssp. japonica HOM05D006100 ORTHO05D007539 8.4e-08 60.8 80 48.8
SalBow5G1753 Salvia bowleyana HOM05D006100 ORTHO05D007539 2.4e-07 59.3 99 40.4
TAR376G0804 Trochodendron aralioides HOM05D001794 ORTHO05D004177 1.2e-06 57.0 110 39.1
TPR.G34229 Trifolium pratense HOM05D006100 ORTHO05D007539 2.7e-06 55.8 110 39.1


User provided reference genes

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