Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g012950 Solanum pennellii HOM05D003331 ORTHO05D003264 2.7e-99 365.5 213 100.0
Solyc02g061990.3 Solanum lycopersicum HOM05D003331 ORTHO05D003264 2.6e-62 242.7 146 88.4
PGSC0003DMG400023897 Solanum tuberosum HOM05D003331 ORTHO05D003264 4.8e-56 221.9 151 82.1
CAN.G225.18 Capsicum annuum HOM05D000004 ORTHO05D000002 5.2e-42 175.3 185 64.9
Nitab4.5_0002337g0180 Nicotiana tabacum HOM05D003331 ORTHO05D003264 3.6e-27 125.9 160 56.2
CAN.G890.4 Capsicum annuum HOM05D003331 ORTHO05D003264 4.4e-25 119.0 160 51.9
Nitab4.5_0001789g0110 Nicotiana tabacum HOM05D003331 ORTHO05D003264 4.4e-25 119.0 161 50.3
Nitab4.5_0000188g0190 Nicotiana tabacum HOM05D003331 ORTHO05D003264 1.8e-23 113.6 158 55.1
Solyc02g083520.2 Solanum lycopersicum HOM05D003331 ORTHO05D003264 3.5e-22 109.4 159 50.9
Sopen02g028310 Solanum pennellii HOM05D003331 ORTHO05D003264 7.8e-22 108.2 160 48.8
Thecc.01G013300 Theobroma cacao HOM05D003331 ORTHO05D003264 1.3e-21 107.5 164 50.0
Hma1.2p1_0561F.1_g178920 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 1.7e-21 107.1 152 48.7
Cfa007016 Carpinus fangiana HOM05D003331 ORTHO05D003264 6.6e-21 105.1 168 48.2
Oeu020389.1 Olea europaea HOM05D003331 ORTHO05D003264 3.3e-20 102.8 144 50.0
COL.COLO4_22478 Corchorus olitorius HOM05D003331 ORTHO05D003264 4.3e-20 102.4 150 48.7
Duzib147G1072 Durio zibethinus HOM05D003331 ORTHO05D003264 4.3e-20 102.4 162 48.1
QL06p051331 Quercus lobata HOM05D003331 ORTHO05D003264 9.5e-20 101.3 171 45.6
CiPaw.08G127600 Carya illinoinensis HOM05D003331 ORTHO05D003264 1.4e-18 97.4 168 46.4
Sabra05G0089800 Salix brachista HOM05D003331 ORTHO05D003264 3.1e-18 96.3 180 43.9
Manes.18G012121 Manihot esculenta HOM05D003331 ORTHO05D003264 5.2e-18 95.5 154 44.8
Manes.02G109000 Manihot esculenta HOM05D003331 ORTHO05D003264 2.6e-17 93.2 176 40.3
Gorai.007G191800 Gossypium raimondii HOM05D003331 ORTHO05D003264 1.3e-16 90.9 160 45.0
Manes.01G149900 Manihot esculenta HOM05D003331 ORTHO05D003264 2.9e-16 89.7 160 43.8
Peaxi162Scf00439g00042 Petunia axillaris HOM05D003331 ORTHO05D003264 2.9e-16 89.7 155 47.1
Cc07_g11170 Coffea canephora HOM05D003331 ORTHO05D003264 3.7e-16 89.4 176 42.6
Peaxi162Scf00328g00414 Petunia axillaris HOM05D003331 ORTHO05D003264 3.7e-16 89.4 176 40.9
Duzib264G0309 Durio zibethinus HOM05D003331 ORTHO05D003264 1.1e-15 87.8 161 46.6
Gohir.A11G172900 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.1e-15 87.8 158 46.2
Gohir.D11G179900 Gossypium hirsutum HOM05D003331 ORTHO05D003264 2.4e-15 86.7 158 44.3
Nn2g14480 Nelumbo nucifera HOM05D003331 ORTHO05D003264 3.2e-15 86.3 183 36.6
GSVIVG01009970001 Vitis vinifera HOM05D003331 ORTHO05D003264 3.2e-15 86.3 151 42.4
Haze_03715 Corylus avellana HOM05D003331 ORTHO05D003264 4.1e-15 85.9 157 41.4
Potri.005G109500 Populus trichocarpa HOM05D003331 ORTHO05D003264 5.4e-15 85.5 180 41.1
THA.LOC104819740 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 5.4e-15 85.5 163 43.6
Sabra05G0188500 Salix brachista HOM05D003331 ORTHO05D003264 7.0e-15 85.1 190 37.4
Potri.005G243400 Populus trichocarpa HOM05D003331 ORTHO05D003264 9.2e-15 84.7 176 40.3
Oeu033812.1 Olea europaea HOM05D003331 ORTHO05D003264 1.2e-14 84.3 149 44.3
Phvul.002G105700 Phaseolus vulgaris HOM05D003331 ORTHO05D003264 1.6e-14 84.0 143 45.5
MBI08_g06420_MAGBIO Magnolia biondii HOM05D003331 ORTHO05D003264 2.7e-14 83.2 197 38.6
Glyma.02G045500 Glycine max HOM05D003331 ORTHO05D003264 4.6e-14 82.4 158 39.2
Cfa013989 Carpinus fangiana HOM05D003331 ORTHO05D003264 1.0e-13 81.3 174 39.7
Carub.0003s3191 Capsella rubella HOM05D003331 ORTHO05D003264 1.3e-13 80.9 154 39.6
CANSAT01G0941 Cannabis sativa HOM05D003331 ORTHO05D003264 3.0e-13 79.7 177 36.2
VMungo1215G2112 Vigna mungo HOM05D003331 ORTHO05D003264 3.9e-13 79.3 151 43.0
Dinv08561 Davidia involucrata HOM05D003331 ORTHO05D003264 5.0e-13 79.0 170 41.2
Haze_22676 Corylus avellana HOM05D003331 ORTHO05D003264 6.6e-13 78.6 176 39.2
Manes.05G144400 Manihot esculenta HOM05D003331 ORTHO05D003264 6.6e-13 78.6 171 35.1
Dinv40128 Davidia involucrata HOM05D003331 ORTHO05D003264 8.6e-13 78.2 96 50.0
TWI09G0177 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 3.3e-12 76.3 154 42.9
BolC7t46566H Brassica oleracea HOM05D003331 ORTHO05D003264 4.3e-12 75.9 176 37.5
PGR102G0808 Punica granatum HOM05D003331 ORTHO05D003264 4.3e-12 75.9 177 40.1
PGSC0003DMG400003652 Solanum tuberosum HOM05D003331 ORTHO05D003264 7.3e-12 75.1 118 44.1
C07p61400 Brassica napus HOM05D003331 ORTHO05D003264 9.5e-12 74.7 177 37.3
Aa31LG6G12860 Aethionema arabicum HOM05D003331 ORTHO05D003264 1.2e-11 74.3 201 34.3
A03p63930 Brassica napus HOM05D003331 ORTHO05D003264 1.2e-11 74.3 172 36.6
BraA03t15462Z Brassica rapa HOM05D003331 ORTHO05D003264 1.2e-11 74.3 172 36.6
Lsat_1_v5_gn_4_145080 Lactuca sativa HOM05D003331 ORTHO05D003264 1.2e-11 74.3 164 39.0
AL3G50780 Arabidopsis lyrata HOM05D003331 ORTHO05D003264 1.6e-11 73.9 148 40.5
Actinidia02367 Actinidia chinensis HOM05D003331 ORTHO05D003264 2.1e-11 73.6 157 38.2
A08p21610 Brassica napus HOM05D003331 ORTHO05D003264 2.1e-11 73.6 192 34.9
BraA08t34108Z Brassica rapa HOM05D003331 ORTHO05D003264 2.1e-11 73.6 192 34.9
CARHR108160 Cardamine hirsuta HOM05D003331 ORTHO05D003264 2.1e-11 73.6 149 40.3
TAR625G0644 Trochodendron aralioides HOM05D003331 ORTHO05D003264 2.1e-11 73.6 175 38.3
Glyma.16G123451 Glycine max HOM05D003331 ORTHO05D003264 2.8e-11 73.2 158 39.9
Gohir.A02G173200 Gossypium hirsutum HOM05D003331 ORTHO05D003264 3.6e-11 72.8 166 39.8
MD02G1125100 Malus domestica HOM05D003331 ORTHO05D003264 3.6e-11 72.8 194 35.6
Oeu012566.1 Olea europaea HOM05D003331 ORTHO05D003264 3.6e-11 72.8 150 44.7
GSVIVG01006332001 Vitis vinifera HOM05D003331 ORTHO05D003264 4.7e-11 72.4 142 43.0
Glyma.01G163500 Glycine max HOM05D003331 ORTHO05D003264 6.2e-11 72.0 147 38.8
THA.LOC104807508 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 6.2e-11 72.0 166 35.5
BolC3t20356H Brassica oleracea HOM05D003331 ORTHO05D003264 8.1e-11 71.6 184 35.3
COL.COLO4_26108 Corchorus olitorius HOM05D003331 ORTHO05D003264 1.1e-10 71.2 156 35.9
Aqoxy6G02126 Aquilegia oxysepala HOM05D003331 ORTHO05D003264 1.4e-10 70.9 173 37.6
BcaC01g00527 Brassica carinata HOM05D003331 ORTHO05D003264 1.8e-10 70.5 184 35.3
RcHm_v2.0_Chr2g0098731 Rosa chinensis HOM05D003331 ORTHO05D003264 3.1e-10 69.7 181 37.0
Thecc.08G048800 Theobroma cacao HOM05D003331 ORTHO05D003264 3.1e-10 69.7 172 36.6
TWI53G1588 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 3.1e-10 69.7 165 39.4
AT2G17770 Arabidopsis thaliana HOM05D003331 ORTHO05D003264 4.0e-10 69.3 151 39.1
BcaNung00784 Brassica carinata HOM05D003331 ORTHO05D003264 5.2e-10 68.9 168 36.9
Duzib093G0576 Durio zibethinus HOM05D003331 ORTHO05D003264 6.8e-10 68.6 187 35.3
HanXRQChr15g0487141 Helianthus annuus HOM05D003331 ORTHO05D003264 8.9e-10 68.2 150 40.0
Sp7g33680 Schrenkiella parvula HOM05D003331 ORTHO05D003264 8.9e-10 68.2 191 33.0
C01p03140 Brassica napus HOM05D003331 ORTHO05D003264 1.2e-09 67.8 168 36.3
C03p80970 Brassica napus HOM05D003331 ORTHO05D003264 1.2e-09 67.8 184 34.8
HanXRQChr05g0133741 Helianthus annuus HOM05D003331 ORTHO05D003264 1.2e-09 67.8 150 37.3
Thhalv10025822m.g Eutrema salsugineum HOM05D003331 ORTHO05D003264 1.5e-09 67.4 180 35.0
Medtr5g022780 Medicago truncatula HOM05D003331 ORTHO05D003264 2.0e-09 67.0 206 35.4
BolC1t00299H Brassica oleracea HOM05D003331 ORTHO05D003264 2.6e-09 66.6 166 36.1
Rhsim10G0207400 Rhododendron simsii HOM05D003331 ORTHO05D003264 2.6e-09 66.6 170 40.0
MD15G1240800 Malus domestica HOM05D003331 ORTHO05D003264 3.4e-09 66.2 221 32.1
A09p11560 Brassica napus HOM05D003331 ORTHO05D003264 4.4e-09 65.9 147 36.7
Eucgr.J02482 Eucalyptus grandis HOM05D003331 ORTHO05D003264 4.4e-09 65.9 163 40.5
AT4G35900 Arabidopsis thaliana HOM05D003331 ORTHO05D003264 5.8e-09 65.5 177 32.8
FAN23G2926 Fragaria x ananassa HOM05D003331 ORTHO05D003264 7.5e-09 65.1 177 37.3
Prupe.7G173300 Prunus persica HOM05D003331 ORTHO05D003264 7.5e-09 65.1 201 34.3
Gohir.D03G006700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 9.8e-09 64.7 166 37.3
A01p02810 Brassica napus HOM05D003331 ORTHO05D003264 1.3e-08 64.3 164 36.0
BraA01t00264Z Brassica rapa HOM05D003331 ORTHO05D003264 1.3e-08 64.3 164 36.0
Lalb_Chr16g0377411 Lupinus albus HOM05D003331 ORTHO05D003264 1.7e-08 63.9 166 37.3
BcaB07g31705 Brassica carinata HOM05D003331 ORTHO05D003264 2.2e-08 63.5 147 35.4
FAN19G3075 Fragaria x ananassa HOM05D003331 ORTHO05D003264 2.9e-08 63.2 190 36.3
Hma1.2p1_0315F.1_g122420 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 2.9e-08 63.2 158 39.9
Rhsim08G0031400 Rhododendron simsii HOM05D003331 ORTHO05D003264 2.9e-08 63.2 166 38.0
Sed0019142 Sechium edule HOM05D003331 ORTHO05D003264 2.9e-08 63.2 130 42.3
BcaNung04885 Brassica carinata HOM05D003331 ORTHO05D003264 3.7e-08 62.8 170 35.3
FAN26G3159 Fragaria x ananassa HOM05D003331 ORTHO05D003264 3.7e-08 62.8 180 36.1
CiPaw.07G145300 Carya illinoinensis HOM05D003331 ORTHO05D003264 4.9e-08 62.4 174 36.2
FAN28G0558 Fragaria x ananassa HOM05D003331 ORTHO05D003264 4.9e-08 62.4 176 37.5
Gorai.003G007000 Gossypium raimondii HOM05D003331 ORTHO05D003264 4.9e-08 62.4 166 36.7
Lalb_Chr09g0321511 Lupinus albus HOM05D003331 ORTHO05D003264 4.9e-08 62.4 164 37.8
Hund16511 Selenicereus undatus HOM05D003331 ORTHO05D003264 4.9e-08 62.4 175 34.9
QL02p012465 Quercus lobata HOM05D003331 ORTHO05D003264 6.4e-08 62.0 200 33.0
FvH4_1g11270 Fragaria vesca HOM05D003331 ORTHO05D003264 8.3e-08 61.6 181 36.5
BcaNung05055 Brassica carinata HOM05D003331 ORTHO05D003264 1.1e-07 61.2 166 34.3
Atru.chr13.244 Acer truncatum HOM05D003331 ORTHO05D003264 1.4e-07 60.8 207 31.4
Psat2g152560 Pisum sativum HOM05D003331 ORTHO05D003264 1.4e-07 60.8 198 31.3
RcHm_v2.0_Chr6g0303481 Rosa chinensis HOM05D003331 ORTHO05D003264 1.4e-07 60.8 181 34.3
Thhalv10023128m.g Eutrema salsugineum HOM05D003331 ORTHO05D003264 2.4e-07 60.1 146 37.7
Medtr8g075130 Medicago truncatula HOM05D003331 ORTHO05D003264 2.4e-07 60.1 158 34.2
Carub.0007s0433 Capsella rubella HOM05D003331 ORTHO05D003264 4.1e-07 59.3 177 33.9
ClCG10G000520 Citrullus lanatus HOM05D003331 ORTHO05D003264 4.1e-07 59.3 84 48.8
BolC9t54251H Brassica oleracea HOM05D003331 ORTHO05D003264 7.1e-07 58.5 171 32.2
CARHR244290 Cardamine hirsuta HOM05D003331 ORTHO05D003264 7.1e-07 58.5 178 33.1
BcaB03g16550 Brassica carinata HOM05D003331 ORTHO05D003264 9.2e-07 58.2 155 34.8
Gohir.A01G109700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 9.2e-07 58.2 152 36.8
SalBow3G1427 Salvia bowleyana HOM05D003331 ORTHO05D003264 1.6e-06 57.4 145 39.3
TAR628G1529 Trochodendron aralioides HOM05D003331 ORTHO05D003264 1.6e-06 57.4 182 34.6
Ciclev10003845m.g Citrus clementina HOM05D003331 ORTHO05D003264 2.1e-06 57.0 178 32.0
unitig_736.g22724 Utricularia gibba HOM05D003331 ORTHO05D003264 2.1e-06 57.0 139 39.6
A04p03570 Brassica napus HOM05D000531 ORTHO05D001630 2.7e-06 56.6 149 34.9
Potri.002G018400 Populus trichocarpa HOM05D003331 ORTHO05D003264 2.7e-06 56.6 159 33.3
VMungo0251G3205 Vigna mungo HOM05D003331 ORTHO05D003264 2.7e-06 56.6 139 38.1
BcaC04g22944 Brassica carinata HOM05D003331 ORTHO05D003264 3.5e-06 56.2 158 34.2
C09p13610 Brassica napus HOM05D003331 ORTHO05D003264 3.5e-06 56.2 158 34.2
BraA09t36802Z Brassica rapa HOM05D003331 ORTHO05D003264 3.5e-06 56.2 163 31.3
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 3.5e-06 56.2 126 37.3
BraA09t36795Z Brassica rapa HOM05D003331 ORTHO05D003264 4.6e-06 55.8 146 34.2
Cpa.g.sc6.298 Carica papaya HOM05D003331 ORTHO05D003264 4.6e-06 55.8 166 34.9
Gorai.002G122200 Gossypium raimondii HOM05D003331 ORTHO05D003264 4.6e-06 55.8 147 36.7
Gohir.A05G184500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 7.8e-06 55.1 168 32.7
Gohir.D01G096500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 7.8e-06 55.1 151 34.4


User provided reference genes

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