Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 0.0e+00 1783.8 1125 100.0
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 8.1e-195 685.3 696 84.1
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.3e-181 640.6 444 71.8
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 1.8e-178 630.9 470 70.2
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 2.5e-164 583.9 465 67.5
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 8.5e-160 568.9 470 66.0
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.1e-148 531.9 365 77.5
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.0e-144 518.8 432 62.0
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 6.5e-136 489.6 466 60.1
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 6.1e-126 456.4 482 51.7
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 2.0e-100 371.7 671 61.1
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 5.1e-96 357.1 422 44.8
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 6.6e-96 356.7 412 44.9
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 1.1e-95 355.9 427 43.8
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 1.2e-94 352.4 444 43.7
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 3.6e-94 350.9 465 48.0
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 1.1e-93 349.4 426 42.3
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 1.1e-93 349.4 414 42.8
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.8e-93 348.6 441 44.2
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 3.1e-93 347.8 438 41.1
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 8.9e-93 346.3 444 42.1
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 2.6e-92 344.7 426 41.8
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 2.6e-92 344.7 414 42.5
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 9.9e-92 342.8 427 41.5
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 1.7e-91 342.0 418 42.6
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 2.2e-91 341.7 414 42.3
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 2.2e-91 341.7 428 42.3
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 8.4e-91 339.7 413 42.4
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 2.4e-90 338.2 427 41.5
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 3.2e-90 337.8 427 41.0
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 3.2e-90 337.8 415 42.9
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 3.2e-90 337.8 445 40.2
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 4.2e-90 337.4 414 42.0
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 9.3e-90 336.3 414 42.8
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 2.7e-89 334.7 426 40.1
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 7.8e-89 333.2 429 40.8
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 1.0e-88 332.8 429 41.0
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 1.0e-88 332.8 427 41.7
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 2.3e-88 331.6 428 40.2
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 1.9e-87 328.6 427 41.2
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 1.9e-87 328.6 414 41.5
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 2.5e-87 328.2 414 40.8
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 2.1e-86 325.1 427 39.8
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 4.8e-86 323.9 414 40.6
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 4.8e-86 323.9 418 40.4
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 6.2e-86 323.6 418 40.2
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 1.1e-85 322.8 430 39.5
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 1.1e-85 322.8 414 40.1
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 1.8e-85 322.0 427 39.3
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 1.2e-84 319.3 427 38.4
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 1.2e-84 319.3 450 38.2
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 2.0e-84 318.5 418 39.5
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 2.6e-84 318.2 431 38.5
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 3.4e-84 317.8 414 39.9
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 5.8e-84 317.0 428 39.5
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 1.3e-83 315.8 454 38.8
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 4.9e-83 313.9 414 38.9
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 6.4e-83 313.5 418 39.2
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 8.4e-83 313.2 445 38.9
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 1.4e-82 312.4 437 38.2
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 4.2e-82 310.8 437 38.4
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 9.3e-82 309.7 414 38.9
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 3.5e-81 307.8 410 39.5
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 4.6e-81 307.4 382 41.9
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 7.9e-81 306.6 381 41.7
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 7.9e-81 306.6 496 35.3
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 1.3e-80 305.8 405 40.7
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 1.9e-79 302.0 443 38.6
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.9e-79 302.0 427 39.1
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 4.3e-79 300.8 418 37.3
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 9.6e-79 299.7 427 38.6
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 1.3e-78 299.3 430 38.8
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 3.6e-78 297.7 414 39.4
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 1.1e-77 296.2 427 37.7
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 6.9e-77 293.5 465 37.2
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 6.9e-77 293.5 474 39.7
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 5.8e-76 290.4 445 36.4
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 4.9e-75 287.3 550 33.8
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 6.4e-75 287.0 397 40.1
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 8.4e-75 286.6 414 37.0
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.2e-74 284.3 418 37.8
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 5.3e-69 267.3 409 35.7
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 9.0e-69 266.5 352 40.3
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 1.5e-68 265.8 383 37.1
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 1.5e-68 265.8 444 35.6
PGSC0003DMG400017876 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.6e-68 265.0 415 43.6
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.7e-67 262.3 418 35.9
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 3.2e-66 258.1 443 35.2
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 3.2e-66 258.1 372 37.9
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 1.9e-63 248.8 348 39.7
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 7.4e-63 246.9 337 39.8
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 1.4e-61 242.7 424 34.2
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 5.3e-61 240.7 415 32.8
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 6.9e-61 240.4 282 43.3
PGSC0003DMG400023165 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.0e-60 238.8 194 71.6
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 2.6e-60 238.4 409 32.3
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.3e-59 236.1 270 45.2
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 1.7e-59 235.7 291 42.6
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 7.9e-57 226.9 294 41.2
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 4.8e-54 217.6 406 32.8
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 1.4e-53 216.1 274 40.1
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 1.1e-47 196.4 286 36.7
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 1.1e-45 189.9 415 29.2
PGSC0003DMG400038827 Solanum tuberosum HOM05D005467 ORTHO05D006523 3.1e-45 188.3 189 60.3
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 1.4e-42 179.5 319 32.3
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 1.1e-39 169.9 400 28.8
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 9.7e-39 166.8 203 42.9
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 2.4e-37 162.2 253 35.6
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 7.0e-37 160.6 249 34.5
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 1.9e-34 152.5 352 30.4
PGSC0003DMG400017875 Solanum tuberosum HOM05D005467 ORTHO05D006523 4.8e-30 137.9 77 83.1
Dinv04888 Davidia involucrata HOM05D005467 ORTHO05D006523 1.1e-29 136.7 187 40.6
Nitab4.5_0004524g0050 Nicotiana tabacum HOM05D005467 ORTHO05D006523 6.5e-27 127.5 114 51.8
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 1.2e-25 123.2 350 27.1
Nitab4.5_0004367g0150 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.1e-25 122.5 128 44.5
Nitab4.5_0002820g0080 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.8e-24 119.4 120 45.8
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 3.5e-20 105.1 268 26.9
Cc11_g09120 Coffea canephora HOM05D005467 ORTHO05D006523 4.5e-20 104.8 147 36.1
PRCOL_00002109 Prasinoderma coloniale HOM05D005467 ORTHO05D006523 5.0e-19 101.3 355 24.2
Nitab4.5_0019054g0020 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.2e-18 98.2 136 38.2
Haze_11049 Corylus avellana HOM05D005467 ORTHO05D006523 1.6e-17 96.3 159 33.3
Haze_11050 Corylus avellana HOM05D005467 ORTHO05D006523 1.0e-16 93.6 177 31.6
Nitab4.5_0002820g0070 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.0e-15 89.4 113 39.8
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 3.4e-15 88.6 82 48.8
Lsat_1_v5_gn_3_86380 Lactuca sativa HOM05D005467 ORTHO05D006523 5.7e-15 87.8 128 37.5
FAN17G1461 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.3e-14 86.7 131 38.2
Sed0021963 Sechium edule HOM05D005467 ORTHO05D006523 1.7e-14 86.3 144 35.4
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 8.3e-14 84.0 94 42.6
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 1.4e-13 83.2 94 41.5
Sopen02g012660 Solanum pennellii HOM05D000004 ORTHO05D000002 1.8e-13 82.8 118 44.1
Nitab4.5_0000688g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.0e-11 77.0 182 31.9
Lsat_1_v5_gn_3_107041 Lactuca sativa HOM05D005467 ORTHO05D006523 2.3e-11 75.9 228 27.2
RcHm_v2.0_Chr3g0493761 Rosa chinensis HOM05D005467 ORTHO05D006523 1.2e-09 70.1 61 54.1
Solyc02g062200.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.2e-09 70.1 227 22.0
Lsat_1_v5_gn_6_22900 Lactuca sativa HOM05D005467 ORTHO05D006523 3.6e-09 68.6 76 40.8
CDE07G1108 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 8.0e-09 67.4 67 43.3


User provided reference genes

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