Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 1.7e-262 909.4 725 100.0
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 4.7e-204 715.3 723 88.4
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 1.6e-172 610.5 468 73.5
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 1.8e-163 580.5 465 67.5
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 2.6e-154 550.1 468 70.1
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 3.7e-148 529.6 457 61.7
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.0e-137 495.0 466 62.7
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 7.7e-122 442.2 494 52.2
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.0e-102 378.6 497 47.5
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 1.7e-92 344.7 466 50.9
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 4.6e-90 336.7 426 41.8
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 5.6e-88 329.7 413 42.6
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 1.6e-87 328.2 425 41.4
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.1e-86 325.5 415 41.2
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.1e-86 325.5 385 50.1
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 1.4e-86 325.1 418 41.4
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 2.3e-86 324.3 420 41.2
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 8.9e-86 322.4 426 41.5
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 1.5e-85 321.6 425 40.9
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 9.9e-85 318.9 426 40.4
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 1.3e-84 318.5 426 39.9
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 2.2e-84 317.8 420 41.0
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 1.1e-83 315.5 408 41.4
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.1e-83 315.5 420 41.7
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 2.4e-83 314.3 421 39.9
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 2.4e-83 314.3 415 40.7
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 7.1e-83 312.8 426 39.4
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 7.1e-83 312.8 408 40.9
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 9.2e-83 312.4 431 41.1
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 9.2e-83 312.4 429 40.6
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 1.2e-82 312.0 407 41.5
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 3.5e-82 310.5 429 38.7
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 4.6e-82 310.1 403 40.9
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 1.7e-81 308.1 426 39.7
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 3.0e-81 307.4 424 41.0
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 6.6e-81 306.2 426 39.2
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 7.3e-80 302.8 425 38.8
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 7.3e-80 302.8 426 38.3
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 1.2e-79 302.0 419 38.4
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 1.6e-79 301.6 423 38.5
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 2.8e-79 300.8 426 37.8
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 2.8e-79 300.8 454 37.2
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 4.7e-79 300.1 429 38.5
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 8.1e-79 299.3 426 38.3
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 1.8e-78 298.1 427 38.4
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 2.4e-78 297.7 426 37.8
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 4.0e-78 297.0 426 38.0
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 4.0e-78 297.0 446 39.0
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 8.9e-78 295.8 424 38.7
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 1.5e-77 295.0 426 38.0
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 1.5e-77 295.0 431 39.2
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 2.6e-77 294.3 425 37.6
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 2.6e-77 294.3 426 37.6
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 3.4e-77 293.9 437 36.8
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 4.4e-77 293.5 425 37.4
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 5.8e-77 293.1 408 38.2
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 9.9e-77 292.4 422 38.2
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 1.3e-76 292.0 421 37.1
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 1.7e-76 291.6 443 36.8
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 9.2e-75 285.8 429 36.8
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 9.2e-75 285.8 377 40.3
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 1.2e-74 285.4 425 38.4
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 1.6e-74 285.0 427 38.2
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 2.1e-74 284.6 421 36.8
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 3.5e-74 283.9 419 38.7
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 4.6e-74 283.5 376 40.4
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 1.3e-73 282.0 419 36.3
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 1.3e-73 282.0 508 34.1
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 8.7e-73 279.3 438 36.5
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.9e-72 278.1 476 41.0
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 7.3e-72 276.2 426 37.1
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 9.6e-72 275.8 559 33.1
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 1.6e-71 275.0 413 38.3
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 2.1e-71 274.6 405 35.8
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 3.6e-71 273.9 426 37.1
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 4.8e-71 273.5 377 39.5
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 8.1e-71 272.7 456 35.1
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 1.8e-70 271.6 426 37.1
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 5.3e-70 270.0 425 35.5
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 8.4e-68 262.7 414 35.7
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.6e-66 256.9 425 34.8
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 3.0e-65 254.2 366 38.3
PGSC0003DMG400017876 Solanum tuberosum HOM05D005467 ORTHO05D006523 3.3e-64 250.8 412 44.7
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 9.6e-64 249.2 426 35.7
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 2.1e-63 248.1 421 34.7
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 1.3e-60 238.8 425 34.6
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 3.2e-59 234.2 429 33.3
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 2.5e-56 224.6 375 34.4
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 3.3e-56 224.2 374 34.2
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 7.4e-56 223.0 438 31.3
PGSC0003DMG400023165 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.1e-55 221.5 193 67.4
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 1.4e-54 218.8 350 37.1
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 6.9e-54 216.5 294 42.5
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 3.4e-53 214.2 333 36.3
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 1.4e-51 208.8 271 39.5
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.2e-51 207.2 275 38.9
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 9.3e-51 206.1 422 28.9
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 2.7e-50 204.5 289 39.8
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 8.7e-49 199.5 267 51.7
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 9.0e-46 189.5 413 29.3
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 9.0e-46 189.5 273 38.1
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 1.1e-38 166.0 271 33.6
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 1.4e-38 165.6 325 30.8
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.2e-37 162.5 199 42.2
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 1.0e-36 159.5 410 27.6
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 1.1e-35 156.0 375 27.5
PGSC0003DMG400038827 Solanum tuberosum HOM05D005467 ORTHO05D006523 3.9e-33 147.5 165 52.1
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 9.7e-32 142.9 225 36.0
PGSC0003DMG400017875 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.2e-31 141.7 73 89.0
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 1.1e-30 139.4 223 35.4
Nitab4.5_0004524g0050 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.1e-30 137.9 114 55.3
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 2.2e-28 131.7 283 30.7
Dinv04888 Davidia involucrata HOM05D005467 ORTHO05D006523 4.7e-26 124.0 172 39.0
Nitab4.5_0004367g0150 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.0e-25 121.3 116 50.0
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 6.7e-25 120.2 384 26.6
Nitab4.5_0002820g0080 Nicotiana tabacum HOM05D005467 ORTHO05D006523 6.7e-25 120.2 116 49.1
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 1.3e-20 105.9 270 29.3
Cc11_g09120 Coffea canephora HOM05D005467 ORTHO05D006523 1.5e-19 102.4 144 38.2
Haze_11049 Corylus avellana HOM05D005467 ORTHO05D006523 7.2e-19 100.1 160 36.2
Nitab4.5_0019054g0020 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.0e-17 94.7 158 32.3
Nitab4.5_0002820g0070 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.6e-16 91.7 132 34.8
FAN17G1461 Fragaria x ananassa HOM05D005467 ORTHO05D006523 9.1e-14 83.2 131 35.9
Sopen02g012660 Solanum pennellii HOM05D000004 ORTHO05D000002 1.0e-12 79.7 69 60.9
Lsat_1_v5_gn_3_107041 Lactuca sativa HOM05D005467 ORTHO05D006523 8.5e-12 76.6 226 25.7
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 3.6e-10 71.2 94 39.4
Haze_11050 Corylus avellana HOM05D005467 ORTHO05D006523 6.1e-10 70.5 172 29.1
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 8.0e-10 70.1 94 38.3
CDE07G1108 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 1.4e-09 69.3 64 46.9
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 3.0e-09 68.2 85 38.8
Solyc02g062200.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 8.3e-07 60.1 61 45.9
RcHm_v2.0_Chr3g0493761 Rosa chinensis HOM05D005467 ORTHO05D006523 9.1e-06 56.6 65 43.1


User provided reference genes

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