Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 1.1e-237 826.2 421 100.0
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 1.0e-230 803.1 421 97.1
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 2.6e-223 778.5 424 95.0
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 1.1e-181 640.2 444 79.7
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 8.1e-172 607.4 435 76.6
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 1.2e-170 603.6 364 86.8
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 7.8e-167 590.9 423 75.9
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 7.1e-152 541.2 347 79.3
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 3.0e-150 535.8 365 74.5
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 1.9e-149 533.1 362 76.0
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 2.5e-149 532.7 428 66.6
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 3.6e-148 528.9 391 72.4
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 1.8e-147 526.6 364 73.9
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 4.5e-146 521.9 367 70.6
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 9.9e-146 520.8 397 69.5
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 1.7e-145 520.0 397 69.0
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 2.2e-145 519.6 325 80.0
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 1.9e-144 516.5 411 65.7
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 1.9e-144 516.5 361 74.0
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 3.2e-144 515.8 358 73.2
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 4.2e-144 515.4 375 68.5
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 1.3e-142 510.4 382 69.1
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 1.8e-142 510.0 342 75.7
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 6.7e-142 508.1 366 69.9
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 6.7e-142 508.1 340 76.2
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 8.7e-142 507.7 418 66.5
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 1.1e-141 507.3 350 73.7
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 1.9e-141 506.5 353 72.0
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 2.5e-141 506.1 389 68.9
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 5.6e-141 505.0 348 73.6
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 7.4e-141 504.6 416 66.8
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 1.6e-140 503.4 344 74.7
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 2.1e-140 503.1 416 66.1
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 2.8e-140 502.7 343 75.2
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 4.8e-140 501.9 395 66.3
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 4.8e-140 501.9 413 65.9
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 8.1e-140 501.1 354 71.5
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 8.1e-140 501.1 413 65.6
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 1.1e-139 500.7 424 64.2
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 1.4e-139 500.4 411 64.7
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 1.4e-139 500.4 340 74.1
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 2.4e-139 499.6 421 65.3
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 2.4e-139 499.6 372 68.0
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 2.4e-139 499.6 325 77.8
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 6.9e-139 498.0 371 69.8
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 2.0e-138 496.5 414 64.5
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 2.6e-138 496.1 418 64.8
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 2.6e-138 496.1 415 66.5
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 3.4e-138 495.7 333 75.7
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 5.8e-138 495.0 434 61.3
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 5.8e-138 495.0 418 63.2
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 3.8e-137 492.3 423 64.5
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 8.4e-137 491.1 414 64.5
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 8.4e-137 491.1 391 66.2
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 2.4e-136 489.6 393 66.9
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 2.4e-136 489.6 428 63.8
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 4.2e-136 488.8 419 63.2
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 5.5e-136 488.4 417 63.3
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 9.3e-136 487.6 295 82.7
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 1.2e-135 487.3 409 63.8
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 2.7e-135 486.1 368 67.9
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 3.5e-135 485.7 418 63.4
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 8.7e-134 481.1 358 67.3
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 3.3e-133 479.2 421 61.8
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 5.6e-133 478.4 354 69.8
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 9.6e-133 477.6 408 65.9
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 2.1e-132 476.5 328 72.9
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 2.8e-132 476.1 292 79.5
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 4.8e-132 475.3 395 64.6
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 5.3e-131 471.9 353 67.1
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 6.9e-131 471.5 416 60.6
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 9.0e-131 471.1 275 84.0
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 2.0e-130 469.9 289 82.4
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 2.6e-130 469.5 410 62.2
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 7.6e-130 468.0 414 61.6
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 2.2e-129 466.5 304 77.3
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 2.9e-129 466.1 503 54.5
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 3.8e-129 465.7 347 69.7
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 3.2e-128 462.6 365 65.5
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 5.5e-128 461.8 414 61.8
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 6.0e-127 458.4 275 84.0
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 1.5e-125 453.8 352 67.9
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 1.5e-122 443.7 513 49.7
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 5.0e-121 438.7 382 63.9
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 1.1e-120 437.6 338 68.9
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 5.7e-117 425.2 360 64.7
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 1.2e-114 417.5 261 78.9
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 7.7e-114 414.8 414 55.8
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 2.9e-113 412.9 369 57.2
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 3.2e-112 409.5 478 50.0
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 9.7e-109 397.9 314 65.0
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 2.8e-108 396.4 415 57.6
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 2.0e-106 390.2 329 63.5
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 5.9e-106 388.7 245 78.0
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 7.7e-106 388.3 287 71.4
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 4.4e-101 372.5 395 53.9
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 2.4e-99 366.7 355 57.2
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 2.6e-93 346.7 279 65.6
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 2.8e-92 343.2 265 66.0
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 3.5e-90 336.3 268 66.8
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 1.7e-89 334.0 261 70.5
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 6.1e-87 325.5 226 73.0
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 1.7e-84 317.4 331 47.4
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 5.9e-82 308.9 393 47.1
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 1.0e-81 308.1 281 59.1
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 8.0e-79 298.5 293 58.0
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 2.0e-77 293.9 203 73.4
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 1.5e-69 267.7 157 80.3
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 6.4e-68 262.3 157 79.6
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 7.5e-61 238.8 220 60.5
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 1.7e-60 237.7 144 77.8
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 2.1e-58 230.7 218 60.1
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 3.2e-43 180.3 214 49.5
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 9.0e-30 135.6 131 52.7
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 2.2e-28 131.0 123 53.7
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 1.1e-27 128.6 136 54.4
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 8.7e-25 119.0 106 57.5
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 1.3e-23 115.2 94 61.7
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 6.9e-22 109.4 61 80.3
Cpa.g.c43318 Carica papaya HOM05D006104 ORTHO05D117575 1.9e-16 91.3 254 28.7
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 2.5e-16 90.9 69 63.8
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 6.2e-15 86.3 159 46.5
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 2.7e-10 70.9 35 91.4
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 1.8e-09 68.2 108 42.6
Psat4g208440 Pisum sativum HOM05D006104 ORTHO05D008303 9.0e-06 55.8 32 84.4


User provided reference genes

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