Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 1.5e-256 889.0 451 100.0
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 2.7e-250 868.2 451 97.8
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 2.3e-241 838.6 451 94.5
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 4.7e-202 708.0 455 80.7
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 1.8e-201 706.1 459 80.0
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 5.0e-196 688.0 450 80.9
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 1.1e-195 686.8 450 80.2
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 2.8e-146 522.7 454 59.9
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 2.2e-143 513.1 456 60.7
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 1.2e-141 507.3 449 60.6
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 1.5e-139 500.4 456 59.4
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 5.6e-139 498.4 453 60.0
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 1.1e-134 484.2 452 58.0
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 2.5e-134 483.0 500 55.4
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 5.5e-134 481.9 451 57.6
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 6.0e-133 478.4 457 57.8
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 7.9e-133 478.0 451 58.8
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 2.5e-131 473.0 463 57.7
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 5.7e-131 471.9 451 57.9
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 5.7e-131 471.9 461 56.2
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 9.7e-131 471.1 458 57.0
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 2.8e-130 469.5 460 57.4
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 4.8e-130 468.8 465 54.8
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 1.1e-129 467.6 465 55.9
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 1.4e-129 467.2 451 55.4
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 4.1e-129 465.7 455 56.7
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 5.3e-129 465.3 453 57.2
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 5.3e-129 465.3 453 57.2
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 5.3e-129 465.3 451 58.3
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 2.0e-128 463.4 452 56.6
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 5.9e-128 461.8 452 55.3
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 1.0e-127 461.1 443 56.4
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 1.7e-127 460.3 453 56.7
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 1.7e-127 460.3 452 56.9
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 6.5e-127 458.4 451 54.5
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 6.5e-127 458.4 453 55.8
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 6.5e-127 458.4 486 55.1
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 1.1e-126 457.6 482 55.0
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 4.2e-126 455.7 459 55.8
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 5.5e-126 455.3 454 53.3
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 7.2e-126 454.9 451 54.8
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 9.4e-126 454.5 507 54.0
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 1.6e-125 453.8 464 53.0
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 2.7e-125 453.0 451 54.5
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 7.9e-125 451.4 451 57.4
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 1.8e-124 450.3 474 53.8
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 6.7e-124 448.4 456 54.8
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 8.8e-124 448.0 482 54.1
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 8.8e-124 448.0 534 49.1
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 3.3e-123 446.0 449 54.1
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 9.7e-123 444.5 450 56.0
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 3.7e-122 442.6 524 50.0
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 1.4e-121 440.7 451 54.1
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 5.3e-121 438.7 450 55.3
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 2.6e-120 436.4 461 52.9
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 1.0e-119 434.5 461 53.1
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 3.8e-119 432.6 469 52.5
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 5.0e-119 432.2 457 53.2
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 5.0e-119 432.2 457 53.4
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 1.1e-118 431.0 456 52.6
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 2.5e-118 429.9 461 53.1
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 3.2e-118 429.5 460 53.3
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 4.2e-118 429.1 459 52.9
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 5.5e-118 428.7 467 53.1
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 7.2e-118 428.3 456 53.9
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 1.2e-117 427.6 454 54.8
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.1e-117 426.8 491 50.7
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 2.1e-117 426.8 460 51.7
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 2.7e-117 426.4 461 52.9
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 6.1e-117 425.2 453 49.7
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.4e-116 424.1 456 52.9
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 3.0e-116 422.9 458 52.2
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 1.1e-115 421.0 467 53.3
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 3.3e-115 419.5 459 50.3
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 4.4e-115 419.1 455 52.7
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 7.4e-115 418.3 456 52.4
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 1.7e-114 417.2 523 47.6
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 4.8e-114 415.6 459 50.8
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 7.0e-113 411.8 461 51.6
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 2.0e-112 410.2 461 51.8
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 3.5e-112 409.5 461 46.6
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 1.3e-111 407.5 455 50.1
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 2.2e-111 406.8 460 49.6
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 6.5e-111 405.2 449 49.7
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 1.3e-106 391.0 280 66.8
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 4.8e-106 389.0 474 46.0
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 4.8e-106 389.0 267 67.4
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 1.9e-102 377.1 271 66.8
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 4.7e-101 372.5 447 47.4
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 8.0e-101 371.7 523 46.5
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 2.3e-100 370.2 356 55.1
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 2.6e-99 366.7 284 62.7
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 2.4e-97 360.1 359 51.3
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 5.3e-97 359.0 357 53.5
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 1.6e-96 357.5 273 59.3
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 2.7e-96 356.7 273 63.0
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 6.5e-95 352.1 266 59.4
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 9.4e-94 348.2 273 59.3
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 1.2e-93 347.8 461 44.3
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 6.1e-93 345.5 521 43.2
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 1.0e-92 344.7 340 50.6
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 4.4e-91 339.3 310 57.4
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 3.1e-89 333.2 280 58.2
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 1.3e-87 327.8 230 67.4
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 6.1e-85 318.9 273 55.7
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 7.5e-83 312.0 475 40.8
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 5.4e-81 305.8 263 57.8
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 7.0e-81 305.4 247 59.5
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 1.0e-79 301.6 271 55.0
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 1.3e-79 301.2 305 49.2
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 1.9e-78 297.4 194 71.6
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 7.8e-72 275.4 282 50.4
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.5e-70 271.2 278 49.6
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 5.6e-70 269.2 177 70.1
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 3.4e-67 260.0 283 49.5
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 1.3e-66 258.1 191 61.3
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 7.8e-56 222.2 226 48.7
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 4.0e-52 209.9 331 39.9
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 7.6e-51 205.7 286 39.9
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 7.1e-49 199.1 245 52.7
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 9.2e-49 198.7 271 42.4
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 7.8e-48 195.7 139 64.0
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 3.3e-46 190.3 178 52.8
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 5.4e-41 172.9 137 60.6
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 2.7e-40 170.6 136 60.3
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 6.6e-39 166.0 263 43.0
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 6.6e-39 166.0 253 40.3
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 5.6e-38 162.9 109 67.9
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 2.6e-35 154.1 78 93.6
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 1.3e-34 151.8 292 33.9
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 2.2e-34 151.0 299 33.1
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 1.9e-33 147.9 250 42.0
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 4.2e-33 146.7 258 45.3
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 1.6e-32 144.8 295 33.6
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.1e-29 134.4 165 43.0
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 7.9e-24 115.9 98 54.1
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 1.0e-23 115.5 119 48.7
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 1.9e-22 111.3 292 28.8
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 3.3e-22 110.5 351 27.4
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 4.5e-11 73.6 165 31.5
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 5.0e-10 70.1 129 44.2
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 5.0e-10 70.1 53 58.5
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 1.4e-09 68.6 106 41.5
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 7.2e-09 66.2 67 50.7
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 9.4e-09 65.9 82 45.1
CSS0014831 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.0e-06 58.2 37 64.9
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.5e-06 57.8 65 44.6


User provided reference genes

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