Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g011150 Solanum pennellii HOM05D007037 ORTHO05D006691 3.5e-36 154.5 78 100.0
PGSC0003DMG400019869 Solanum tuberosum HOM05D007037 ORTHO05D006691 2.1e-25 118.6 82 80.5
Nitab4.5_0009030g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 5.7e-23 110.5 81 72.8
Nitab4.5_0000005g0340 Nicotiana tabacum HOM05D007037 ORTHO05D006691 6.3e-22 107.1 81 70.4
Solyc02g032840.1 Solanum lycopersicum HOM05D007037 ORTHO05D006691 6.3e-22 107.1 59 94.9
Peaxi162Scf00331g00119 Petunia axillaris HOM05D007037 ORTHO05D006691 9.5e-18 93.2 82 58.5
CSS0006945 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 6.1e-17 90.5 83 59.0
Lsat_1_v5_gn_4_60821 Lactuca sativa HOM05D007037 ORTHO05D006691 1.8e-16 89.0 78 56.4
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 2.3e-16 88.6 76 60.5
ECA234G0681 Erigeron canadensis HOM05D007037 ORTHO05D006691 4.0e-16 87.8 79 59.5
Hma1.2p1_0749F.1_g212630 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 8.9e-16 86.7 74 60.8
Hma1.2p1_0749F.1_g212635 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 8.9e-16 86.7 74 60.8
QL05p073032 Quercus lobata HOM05D007037 ORTHO05D006691 1.5e-15 85.9 81 56.8
DCAR_008156 Daucus carota HOM05D007037 ORTHO05D006691 2.0e-15 85.5 83 54.2
Nitab4.5_0005074g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 2.6e-15 85.1 76 59.2
Oeu025269.1 Olea europaea HOM05D007037 ORTHO05D006691 4.4e-15 84.3 75 54.7
Nitab4.5_0002827g0030 Nicotiana tabacum HOM05D007037 ORTHO05D006691 7.5e-15 83.6 76 57.9
RcHm_v2.0_Chr5g0002881 Rosa chinensis HOM05D007037 ORTHO05D006691 7.5e-15 83.6 75 54.7
Prupe.4G019700 Prunus persica HOM05D007037 ORTHO05D006691 1.7e-14 82.4 76 56.6
CiPaw.09G092600 Carya illinoinensis HOM05D007037 ORTHO05D006691 2.2e-14 82.0 76 56.6
Potri.004G013601 Populus trichocarpa HOM05D007037 ORTHO05D006691 2.2e-14 82.0 75 53.3
Eucgr.E04050 Eucalyptus grandis HOM05D007037 ORTHO05D006691 4.9e-14 80.9 74 54.1
MD05G1347800 Malus domestica HOM05D007037 ORTHO05D006691 4.9e-14 80.9 76 55.3
TAR624G1029 Trochodendron aralioides HOM05D007037 ORTHO05D006691 4.9e-14 80.9 82 53.7
Manes.16G006400 Manihot esculenta HOM05D007037 ORTHO05D006691 1.1e-13 79.7 75 57.3
Thecc.06G221700 Theobroma cacao HOM05D007037 ORTHO05D006691 1.1e-13 79.7 75 58.7
FAN21G2981 Fragaria x ananassa HOM05D001191 ORTHO05D000979 1.4e-13 79.3 81 49.4
FAN25G2740 Fragaria x ananassa HOM05D007037 ORTHO05D006691 1.4e-13 79.3 74 52.7
Gohir.A05G170900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 1.4e-13 79.3 74 56.8
CSS0026389 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 1.8e-13 79.0 77 54.5
Duzib192G0147 Durio zibethinus HOM05D007037 ORTHO05D006691 2.4e-13 78.6 75 53.3
COL.COLO4_00342 Corchorus olitorius HOM05D007037 ORTHO05D006691 3.2e-13 78.2 75 53.3
Gohir.D05G173900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 3.2e-13 78.2 74 55.4
Gorai.009G179200 Gossypium raimondii HOM05D007037 ORTHO05D006691 3.2e-13 78.2 74 55.4
MD10G1322200 Malus domestica HOM05D007037 ORTHO05D006691 3.2e-13 78.2 76 51.3
Aqoxy1G02111 Aquilegia oxysepala HOM05D007037 ORTHO05D006691 4.1e-13 77.8 70 55.7
Manes.01G159201 Manihot esculenta HOM05D007037 ORTHO05D006691 5.4e-13 77.4 75 56.0
Cc09_g01610 Coffea canephora HOM05D007037 ORTHO05D006691 7.0e-13 77.0 75 49.3
PGSC0003DMG400016450 Solanum tuberosum HOM05D007037 ORTHO05D006691 7.8e-12 73.6 80 48.8
Potri.011G004400 Populus trichocarpa HOM05D007037 ORTHO05D006691 1.3e-11 72.8 76 48.7
Atru.chr10.2236 Acer truncatum HOM05D007037 ORTHO05D006691 1.7e-11 72.4 76 50.0
Sopen02g025300 Solanum pennellii HOM05D007037 ORTHO05D006691 2.9e-11 71.6 80 47.5
Peaxi162Scf01204g00120 Petunia axillaris HOM05D007037 ORTHO05D006691 1.5e-10 69.3 77 53.2
EL10Ac8g20067 Beta vulgaris HOM05D007037 ORTHO05D006691 5.6e-10 67.4 75 48.0
Medtr4g132230 Medicago truncatula HOM05D007037 ORTHO05D006691 5.6e-10 67.4 74 54.1
SalBow8G3366 Salvia bowleyana HOM05D007037 ORTHO05D006691 3.6e-09 64.7 66 53.0
Ca_26471_v3 Cicer arietinum L. HOM05D007037 ORTHO05D006691 6.2e-09 63.9 84 45.2
Sed0008683 Sechium edule HOM05D007037 ORTHO05D006691 8.0e-09 63.5 69 50.7
THA.LOC104823525 Tarenaya hassleriana HOM05D007037 ORTHO05D006691 8.0e-09 63.5 71 46.5
Sabra04G0006400 Salix brachista HOM05D007037 ORTHO05D006691 1.0e-08 63.2 75 45.3
HanXRQChr16g0506491 Helianthus annuus HOM05D007037 ORTHO05D006691 1.4e-08 62.8 77 44.2
TPR.G37004 Trifolium pratense HOM05D007037 ORTHO05D006691 1.4e-08 62.8 80 48.8
FvH4_3g01970 Fragaria vesca HOM05D007037 ORTHO05D006691 1.8e-08 62.4 81 40.7
TPR.G13436 Trifolium pratense HOM05D007037 ORTHO05D006691 1.8e-08 62.4 77 45.5
ClCG01G021940 Citrullus lanatus HOM05D007037 ORTHO05D006691 3.1e-08 61.6 69 50.7
Ca_21080_v3 Cicer arietinum L. HOM05D007037 ORTHO05D006691 5.2e-08 60.8 77 49.4
Ciclev10018055m.g Citrus clementina HOM05D007037 ORTHO05D006691 5.2e-08 60.8 74 50.0
Medtr2g023440 Medicago truncatula HOM05D007037 ORTHO05D006691 5.2e-08 60.8 77 45.5
CsaV3_6G049020 Cucumis sativus L. HOM05D007037 ORTHO05D006691 6.8e-08 60.5 69 47.8
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 6.8e-08 60.5 70 48.6
Potri.014G153900 Populus trichocarpa HOM05D009550 ORTHO05D006691 6.8e-08 60.5 79 43.0
AL2G13860 Arabidopsis lyrata HOM05D007037 ORTHO05D006691 8.9e-08 60.1 56 58.9
vmacro23211 Vaccinium macrocarpon HOM05D007037 ORTHO05D006691 8.9e-08 60.1 79 43.0
Psat4g006560 Pisum sativum HOM05D007037 ORTHO05D006691 1.5e-07 59.3 75 49.3
Glyma.17G012900 Glycine max HOM05D007037 ORTHO05D006691 2.0e-07 58.9 76 50.0
Migut.M01325 Erythranthe guttata HOM05D007037 ORTHO05D006691 2.6e-07 58.5 75 46.7
Glyma.07G261100 Glycine max HOM05D007037 ORTHO05D006691 3.4e-07 58.2 76 48.7
CiPaw.10G071700 Carya illinoinensis HOM05D007037 ORTHO05D006691 4.4e-07 57.8 76 43.4
unitig_32.g11533 Utricularia gibba HOM05D007037 ORTHO05D006691 4.4e-07 57.8 76 40.8
AT1G62045 Arabidopsis thaliana HOM05D007037 ORTHO05D006691 5.8e-07 57.4 56 57.1
DCAR_019271 Daucus carota HOM05D007037 ORTHO05D006691 5.8e-07 57.4 86 43.0
Actinidia09718 Actinidia chinensis HOM05D007037 ORTHO05D006691 7.5e-07 57.0 87 42.5
Aa31LG1G3030 Aethionema arabicum HOM05D007037 ORTHO05D006691 7.5e-07 57.0 79 41.8
Lj4g0019440 Lotus japonicus HOM05D007037 ORTHO05D006691 7.5e-07 57.0 74 47.3
Sed0010286 Sechium edule HOM05D007037 ORTHO05D006691 7.5e-07 57.0 69 47.8
vmacro15807 Vaccinium macrocarpon HOM05D007037 ORTHO05D006691 7.5e-07 57.0 88 42.0
Cc05_g04380 Coffea canephora HOM05D007037 ORTHO05D006691 9.8e-07 56.6 71 49.3
Lalb_Chr13g0304241 Lupinus albus HOM05D007037 ORTHO05D006691 1.7e-06 55.8 78 41.0
AT1G11740 Arabidopsis thaliana HOM05D001191 ORTHO05D000979 2.2e-06 55.5 77 41.6
Lalb_Chr07g0177181 Lupinus albus HOM05D007037 ORTHO05D006691 2.2e-06 55.5 73 46.6
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.2e-06 55.5 66 45.5
Hund23465 Selenicereus undatus HOM05D007037 ORTHO05D006691 2.2e-06 55.5 71 43.7
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.9e-06 55.1 64 46.9
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 3.7e-06 54.7 67 46.3
Phvul.003G079400 Phaseolus vulgaris HOM05D007037 ORTHO05D006691 3.7e-06 54.7 76 46.1
AL1G22910 Arabidopsis lyrata HOM05D001191 ORTHO05D000979 4.9e-06 54.3 77 40.3
Carub.0001s1138 Capsella rubella HOM05D007037 ORTHO05D006691 4.9e-06 54.3 60 55.0
CARHR012050 Cardamine hirsuta HOM05D007037 ORTHO05D006691 4.9e-06 54.3 60 50.0
CARHR050140 Cardamine hirsuta HOM05D007037 ORTHO05D006691 4.9e-06 54.3 55 52.7
Carub.0002s0297 Capsella rubella HOM05D007037 ORTHO05D006691 6.4e-06 53.9 79 44.3


User provided reference genes

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