Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g011120 Solanum pennellii HOM05D003074 ORTHO05D002434 8.8e-50 199.9 96 100.0
PGSC0003DMG400019879 Solanum tuberosum HOM05D003074 ORTHO05D002434 4.5e-46 187.6 96 94.8
Nitab4.5_0009398g0020 Nicotiana tabacum HOM05D003074 ORTHO05D002434 1.6e-22 109.4 107 59.8
Ciclev10009680m.g Citrus clementina HOM05D003074 ORTHO05D002434 3.6e-11 71.6 122 36.1
Atru.chr10.2213 Acer truncatum HOM05D003074 ORTHO05D002434 5.2e-10 67.8 65 52.3
Haze_06793 Corylus avellana HOM05D003074 ORTHO05D002434 2.0e-09 65.9 67 49.3
Thecc.06G219600 Theobroma cacao HOM05D003074 ORTHO05D002434 2.0e-09 65.9 118 33.9
EL10Ac4g07810 Beta vulgaris HOM05D003074 ORTHO05D002434 9.9e-09 63.5 106 37.7
Nn1g03544 Nelumbo nucifera HOM05D003074 ORTHO05D002434 9.9e-09 63.5 115 33.0
Lj6g0015217 Lotus japonicus HOM05D003074 ORTHO05D002434 1.7e-08 62.8 100 35.0
DCAR_004216 Daucus carota HOM05D003074 ORTHO05D002434 2.2e-08 62.4 114 36.8
Gorai.002G088300 Gossypium raimondii HOM05D003074 ORTHO05D002434 2.2e-08 62.4 112 37.5
Sabra16G0289700 Salix brachista HOM05D003074 ORTHO05D002434 2.2e-08 62.4 112 34.8
Aqoxy1G02174 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 2.9e-08 62.0 67 44.8
COL.COLO4_09658 Corchorus olitorius HOM05D003074 ORTHO05D002434 2.9e-08 62.0 73 41.1
Duzib235G0239 Durio zibethinus HOM05D003074 ORTHO05D002434 2.9e-08 62.0 110 37.3
Hma1.2p1_0673F.1_g201330 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 3.8e-08 61.6 67 44.8
MBI02_g07159_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 3.8e-08 61.6 56 51.8
PGSC0003DMG400029820 Solanum tuberosum HOM05D003074 ORTHO05D002434 3.8e-08 61.6 103 35.0
Cfa000232 Carpinus fangiana HOM05D003074 ORTHO05D002434 4.9e-08 61.2 60 48.3
Manes.03G129100 Manihot esculenta HOM05D003074 ORTHO05D002434 6.4e-08 60.8 92 39.1
CiPaw.09G091000 Carya illinoinensis HOM05D003074 ORTHO05D002434 8.4e-08 60.5 68 42.6
Hma1.2p1_1222F.1_g268140 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 8.4e-08 60.5 67 43.3
PGSC0003DMG400032292 Solanum tuberosum HOM05D003074 ORTHO05D002434 8.4e-08 60.5 103 36.9
Gohir.D05G369300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.1e-07 60.1 66 42.4
Gorai.009G438000 Gossypium raimondii HOM05D003074 ORTHO05D002434 1.1e-07 60.1 66 42.4
TAR624G1270 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.1e-07 60.1 76 42.1
Aqoxy1G02176 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 1.4e-07 59.7 119 35.3
Dinv22264 Davidia involucrata HOM05D003074 ORTHO05D002434 1.4e-07 59.7 57 50.9
Glyma.18G096700 Glycine max HOM05D003074 ORTHO05D002434 1.4e-07 59.7 101 34.7
MBI18_g22612_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 1.4e-07 59.7 115 35.7
THA.LOC104817856 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 1.4e-07 59.7 57 54.4
Thecc.07G037400 Theobroma cacao HOM05D003074 ORTHO05D002434 1.4e-07 59.7 66 47.0
Gohir.A04G016900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.9e-07 59.3 66 42.4
Lsat_1_v5_gn_5_6000 Lactuca sativa HOM05D003074 ORTHO05D002434 1.9e-07 59.3 58 56.9
Lsat_1_v5_gn_9_93960 Lactuca sativa HOM05D003074 ORTHO05D002434 1.9e-07 59.3 56 51.8
Manes.16G007700 Manihot esculenta HOM05D003074 ORTHO05D002434 1.9e-07 59.3 122 32.0
TWI38G1232 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 1.9e-07 59.3 127 33.9
vmacro03644 Vaccinium macrocarpon HOM05D003074 ORTHO05D002434 1.9e-07 59.3 60 46.7
FvH4_3g22640 Fragaria vesca HOM05D003074 ORTHO05D002434 2.4e-07 58.9 60 46.7
FAN11G2929 Fragaria x ananassa HOM05D003074 ORTHO05D002434 2.4e-07 58.9 60 46.7
Gohir.A01G079300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 2.4e-07 58.9 112 35.7
LjContig00272g0022666 Lotus japonicus HOM05D003074 ORTHO05D002434 2.4e-07 58.9 103 35.0
Potri.004G015900 Populus trichocarpa HOM05D003074 ORTHO05D002434 2.4e-07 58.9 76 42.1
Ca_01715_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 3.2e-07 58.5 102 36.3
Ca_30684_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 3.2e-07 58.5 102 36.3
Cc05_g13710 Coffea canephora HOM05D003074 ORTHO05D002434 3.2e-07 58.5 74 39.2
FAN16G0504 Fragaria x ananassa HOM05D003074 ORTHO05D002434 3.2e-07 58.5 60 46.7
FAN25G2410 Fragaria x ananassa HOM05D003074 ORTHO05D002434 3.2e-07 58.5 60 46.7
Medtr3g051530 Medicago truncatula HOM05D003074 ORTHO05D002434 3.2e-07 58.5 101 36.6
QL05p073377 Quercus lobata HOM05D003074 ORTHO05D002434 3.2e-07 58.5 67 44.8
Haze_09674 Corylus avellana HOM05D003074 ORTHO05D002434 4.2e-07 58.2 67 43.3
Duzib268G1655 Durio zibethinus HOM05D003074 ORTHO05D002434 4.2e-07 58.2 78 38.5
FAN21G2959 Fragaria x ananassa HOM05D003074 ORTHO05D002434 4.2e-07 58.2 61 45.9
Hma1.2p1_1091F.1_g255850 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 4.2e-07 58.2 57 49.1
Medtr3g051570 Medicago truncatula HOM05D003074 ORTHO05D002434 4.2e-07 58.2 103 35.0
Sabra04G0008200 Salix brachista HOM05D003074 ORTHO05D002434 4.2e-07 58.2 78 35.9
TPR.G16595 Trifolium pratense HOM05D003074 ORTHO05D002434 4.2e-07 58.2 102 37.3
CSS0019776 Camellia sinensis var. sinensis HOM05D003074 ORTHO05D002434 5.4e-07 57.8 107 38.3
DCAR_008152 Daucus carota HOM05D003074 ORTHO05D002434 5.4e-07 57.8 112 34.8
Duzib192G0001 Durio zibethinus HOM05D003074 ORTHO05D002434 5.4e-07 57.8 113 35.4
Gohir.D01G066350 Gossypium hirsutum HOM05D003074 ORTHO05D002434 5.4e-07 57.8 67 46.3
Sed0007461 Sechium edule HOM05D003074 ORTHO05D002434 5.4e-07 57.8 113 33.6
Atru.chr2.3400 Acer truncatum HOM05D003074 ORTHO05D002434 7.1e-07 57.4 87 37.9
ATR0752G060 Amborella trichopoda HOM05D003074 ORTHO05D002434 7.1e-07 57.4 73 38.4
PGSC0003DMG400031876 Solanum tuberosum HOM05D003074 ORTHO05D002434 7.1e-07 57.4 103 35.9
TWI38G1886 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 7.1e-07 57.4 60 48.3
TAR626G1667 Trochodendron aralioides HOM05D003074 ORTHO05D002434 7.1e-07 57.4 64 45.3
CiPaw.10G070500 Carya illinoinensis HOM05D003074 ORTHO05D002434 9.3e-07 57.0 63 42.9
Lalb_Chr04g0248431 Lupinus albus HOM05D003074 ORTHO05D002434 9.3e-07 57.0 95 34.7
CDE05G1751 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 1.2e-06 56.6 116 32.8
Hma1.2p1_1162F.1_g262580 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 1.2e-06 56.6 57 47.4
PSO541G1700 Papaver somniferum HOM05D003074 ORTHO05D002434 1.2e-06 56.6 57 43.9
PSO675G3145 Papaver somniferum HOM05D003074 ORTHO05D002434 1.2e-06 56.6 57 43.9
RhsimUnG0250800 Rhododendron simsii HOM05D003074 ORTHO05D002434 1.2e-06 56.6 66 42.4
RcHm_v2.0_Chr5g0039411 Rosa chinensis HOM05D003074 ORTHO05D002434 1.2e-06 56.6 60 45.0
Cfa020350 Carpinus fangiana HOM05D003074 ORTHO05D002434 1.6e-06 56.2 66 42.4
CiPaw.12G129500 Carya illinoinensis HOM05D003074 ORTHO05D002434 1.6e-06 56.2 82 39.0
Potri.011G139400 Populus trichocarpa HOM05D003074 ORTHO05D002434 1.6e-06 56.2 56 42.9
THA.LOC104812967 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 1.6e-06 56.2 56 42.9
Ca_00651_v3 Cicer arietinum L. HOM05D008677 ORTHO05D002434 2.1e-06 55.8 87 41.4
Duzib213G0915 Durio zibethinus HOM05D003074 ORTHO05D002434 2.1e-06 55.8 75 37.3
MD05G1345200 Malus domestica HOM05D003074 ORTHO05D002434 2.1e-06 55.8 79 46.8
Nn5g29371 Nelumbo nucifera HOM05D003074 ORTHO05D002434 2.1e-06 55.8 82 42.7
QL08p010341 Quercus lobata HOM05D003074 ORTHO05D002434 2.1e-06 55.8 75 40.0
AUR62020442 Chenopodium quinoa HOM05D003074 ORTHO05D002434 2.7e-06 55.5 111 35.1
Cc09_g01730 Coffea canephora HOM05D003074 ORTHO05D002434 2.7e-06 55.5 68 50.0
ECA246G0494 Erigeron canadensis HOM05D003074 ORTHO05D002434 2.7e-06 55.5 56 55.4
MBI02_g40709_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 2.7e-06 55.5 57 49.1
Medtr3g051510 Medicago truncatula HOM05D003074 ORTHO05D002434 2.7e-06 55.5 57 49.1
Prupe.4G212400 Prunus persica HOM05D003074 ORTHO05D002434 2.7e-06 55.5 57 47.4
Atru.chr2.3399 Acer truncatum HOM05D003074 ORTHO05D002434 3.5e-06 55.1 67 43.3
Ah.04g165880 Amaranthus hybridus HOM05D003074 ORTHO05D002434 3.5e-06 55.1 113 36.3
Glyma.08G316000 Glycine max HOM05D003074 ORTHO05D002434 3.5e-06 55.1 66 42.4
Gohir.A10G013000 Gossypium hirsutum HOM05D003074 ORTHO05D002434 3.5e-06 55.1 57 43.9
TAR627G0593 Trochodendron aralioides HOM05D003074 ORTHO05D002434 3.5e-06 55.1 57 45.6
CiPaw.11G189000 Carya illinoinensis HOM05D003074 ORTHO05D002434 4.6e-06 54.7 62 45.2
Dinv40751 Davidia involucrata HOM05D003074 ORTHO05D002434 4.6e-06 54.7 66 39.4
Eucgr.E04061 Eucalyptus grandis HOM05D003074 ORTHO05D002434 4.6e-06 54.7 73 39.7
Rhsim13G0146000 Rhododendron simsii HOM05D002761 ORTHO05D003351 4.6e-06 54.7 84 40.5
RhsimUnG0109700 Rhododendron simsii HOM05D003074 ORTHO05D002434 4.6e-06 54.7 84 40.5
Actinidia35342 Actinidia chinensis HOM05D003074 ORTHO05D002434 6.0e-06 54.3 56 48.2
Glyma.02G290900 Glycine max HOM05D003074 ORTHO05D002434 6.0e-06 54.3 97 34.0
MD11G1218800 Malus domestica HOM05D003074 ORTHO05D002434 6.0e-06 54.3 69 42.0
Medtr3g051610 Medicago truncatula HOM05D003074 ORTHO05D002434 6.0e-06 54.3 98 33.7
PGR031G1144 Punica granatum HOM05D003074 ORTHO05D002434 6.0e-06 54.3 107 31.8
AUR62015772 Chenopodium quinoa HOM05D003074 ORTHO05D002434 7.8e-06 53.9 110 34.5
ClCG05G014310 Citrullus lanatus HOM05D003074 ORTHO05D002434 7.8e-06 53.9 57 42.1
Gohir.D10G012900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 7.8e-06 53.9 57 42.1
Gorai.011G014600 Gossypium raimondii HOM05D003074 ORTHO05D002434 7.8e-06 53.9 57 42.1
Manes.17G038600 Manihot esculenta HOM05D003074 ORTHO05D002434 7.8e-06 53.9 116 34.5
TAR624G0488 Trochodendron aralioides HOM05D003074 ORTHO05D002434 7.8e-06 53.9 66 40.9


User provided reference genes

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