Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g010250 Solanum pennellii HOM05D003807 ORTHO05D002847 9.0e-72 273.5 137 100.0
Solyc02g031990.1 Solanum lycopersicum HOM05D003807 ORTHO05D002847 1.2e-68 263.1 137 97.8
PGSC0003DMG400014938 Solanum tuberosum HOM05D003807 ORTHO05D002847 6.3e-49 197.6 149 79.2
Nitab4.5_0002305g0070 Nicotiana tabacum HOM05D003807 ORTHO05D002847 1.1e-32 143.7 152 57.2
Nitab4.5_0000138g0140 Nicotiana tabacum HOM05D003807 ORTHO05D002847 3.2e-29 132.1 141 58.9
Peaxi162Scf00198g00104 Petunia axillaris HOM05D003807 ORTHO05D002847 4.2e-29 131.7 160 51.9
Peaxi162Scf00556g00041 Petunia axillaris HOM05D003807 ORTHO05D002847 9.4e-29 130.6 160 51.9
Nitab4.5_0000443g0160 Nicotiana tabacum HOM05D003807 ORTHO05D002847 7.0e-24 114.4 161 49.7
Nitab4.5_0008965g0010 Nicotiana tabacum HOM05D003807 ORTHO05D002847 9.1e-24 114.0 168 46.4
Sopen02g017610 Solanum pennellii HOM05D003807 ORTHO05D002847 1.7e-22 109.8 125 52.8
Peaxi162Scf00199g00093 Petunia axillaris HOM05D003807 ORTHO05D002847 3.6e-20 102.1 156 45.5
PGSC0003DMG400009434 Solanum tuberosum HOM05D003807 ORTHO05D002847 2.0e-18 96.3 119 54.6
DCAR_001286 Daucus carota HOM05D003807 ORTHO05D002847 5.9e-15 84.7 123 40.7
Manes.03G074500 Manihot esculenta HOM05D003807 ORTHO05D002847 1.0e-14 84.0 97 57.7
Duzib248G0332 Durio zibethinus HOM05D003807 ORTHO05D002847 1.3e-14 83.6 105 52.4
Thecc.02G005500 Theobroma cacao HOM05D003807 ORTHO05D002847 2.9e-14 82.4 107 49.5
Gohir.A12G048200 Gossypium hirsutum HOM05D003807 ORTHO05D002847 5.0e-14 81.6 79 59.5
Nitab4.5_0008708g0020 Nicotiana tabacum HOM05D003807 ORTHO05D002847 6.5e-14 81.3 101 52.5
QL11p012767 Quercus lobata HOM05D003807 ORTHO05D002847 8.5e-14 80.9 102 49.0
CANSAT35G1226 Cannabis sativa HOM05D003807 ORTHO05D002847 1.1e-13 80.5 89 56.2
Duzib132G0260 Durio zibethinus HOM05D003807 ORTHO05D002847 1.5e-13 80.1 86 55.8
Nitab4.5_0000443g0140 Nicotiana tabacum HOM05D003807 ORTHO05D002847 1.5e-13 80.1 93 54.8
Peaxi162Scf00199g00915 Petunia axillaris HOM05D003807 ORTHO05D002847 1.9e-13 79.7 99 49.5
CiPaw.09G073700 Carya illinoinensis HOM05D003807 ORTHO05D002847 3.2e-13 79.0 87 51.7
Gohir.D12G047000 Gossypium hirsutum HOM05D003807 ORTHO05D002847 5.5e-13 78.2 83 54.2
Gorai.008G049600 Gossypium raimondii HOM05D003807 ORTHO05D002847 5.5e-13 78.2 83 54.2
Dinv31174 Davidia involucrata HOM05D003807 ORTHO05D002847 9.4e-13 77.4 75 56.0
TWI63G0470 Tripterygium wilfordii HOM05D003807 ORTHO05D002847 9.4e-13 77.4 81 55.6
RcHm_v2.0_Chr5g0020711 Rosa chinensis HOM05D003807 ORTHO05D002847 1.2e-12 77.0 88 55.7
Solyc02g068460.1 Solanum lycopersicum HOM05D003807 ORTHO05D002847 1.2e-12 77.0 115 47.0
Atru.chr10.409 Acer truncatum HOM05D003807 ORTHO05D002847 1.6e-12 76.6 66 60.6
CAN.G1299.6 Capsicum annuum HOM05D003807 ORTHO05D002847 1.6e-12 76.6 117 47.0
Prupe.4G116000 Prunus persica HOM05D003807 ORTHO05D002847 1.6e-12 76.6 116 45.7
Sabra01G0133000 Salix brachista HOM05D003807 ORTHO05D002847 1.6e-12 76.6 86 52.3
Haze_06157 Corylus avellana HOM05D003807 ORTHO05D002847 3.6e-12 75.5 69 58.0
TWI38G0220 Tripterygium wilfordii HOM05D003807 ORTHO05D002847 3.6e-12 75.5 91 51.6
Cfa000664 Carpinus fangiana HOM05D003807 ORTHO05D002847 4.7e-12 75.1 69 58.0
Haze_06156 Corylus avellana HOM05D003807 ORTHO05D002847 4.7e-12 75.1 59 64.4
Sopen02g017600 Solanum pennellii HOM05D003807 ORTHO05D002847 4.7e-12 75.1 116 44.8
FvH4_3g12720 Fragaria vesca HOM05D003807 ORTHO05D002847 8.0e-12 74.3 107 47.7
FAN11G1675 Fragaria x ananassa HOM05D003807 ORTHO05D002847 8.0e-12 74.3 107 47.7
FAN25G3700 Fragaria x ananassa HOM05D003807 ORTHO05D002847 8.0e-12 74.3 121 45.5
FAN16G0324 Fragaria x ananassa HOM05D003807 ORTHO05D002847 1.0e-11 73.9 107 48.6
Potri.001G158800 Populus trichocarpa HOM05D003807 ORTHO05D002847 1.0e-11 73.9 118 44.1
Glyma.15G158200 Glycine max HOM05D003807 ORTHO05D002847 1.4e-11 73.6 94 54.3
Sabra03G0046300 Salix brachista HOM05D003807 ORTHO05D002847 1.4e-11 73.6 100 47.0
Peaxi162Scf00876g00004 Petunia axillaris HOM05D003807 ORTHO05D002847 1.8e-11 73.2 87 52.9
Peaxi162Scf01809g00001 Petunia axillaris HOM05D003807 ORTHO05D002847 1.8e-11 73.2 87 52.9
Ciclev10016595m.g Citrus clementina HOM05D003807 ORTHO05D002847 2.3e-11 72.8 80 53.8
PGSC0003DMG400009442 Solanum tuberosum HOM05D003807 ORTHO05D002847 2.3e-11 72.8 117 41.9
Potri.003G075800 Populus trichocarpa HOM05D003807 ORTHO05D002847 4.0e-11 72.0 85 50.6
SalBow8G4256 Salvia bowleyana HOM05D003807 ORTHO05D002847 4.0e-11 72.0 71 53.5
Oeu008729.1 Olea europaea HOM05D003807 ORTHO05D002847 6.8e-11 71.2 60 65.0
Lalb_Chr15g0083801 Lupinus albus HOM05D003807 ORTHO05D002847 1.5e-10 70.1 70 51.4
Migut.M02002 Erythranthe guttata HOM05D003807 ORTHO05D002847 2.0e-10 69.7 71 50.7
Cpa.g.sc30.131 Carica papaya HOM05D003807 ORTHO05D002847 2.6e-10 69.3 70 55.7
Eucgr.D00026 Eucalyptus grandis HOM05D003807 ORTHO05D002847 2.6e-10 69.3 55 61.8
DCAR_004339 Daucus carota HOM05D003807 ORTHO05D002847 3.4e-10 68.9 82 47.6
Lj1P1147T18 Lonicera japonica HOM05D003807 ORTHO05D002847 3.4e-10 68.9 125 38.4
CiPaw.10G062300 Carya illinoinensis HOM05D003807 ORTHO05D002847 4.4e-10 68.6 99 43.4
DCAR_024218 Daucus carota HOM05D003807 ORTHO05D002847 4.4e-10 68.6 82 47.6
MELO3C007028.2 Cucumis melo HOM05D003807 ORTHO05D002847 5.7e-10 68.2 63 58.7
Duzib248G1013 Durio zibethinus HOM05D003807 ORTHO05D002847 5.7e-10 68.2 60 53.3
PGR004G1269 Punica granatum HOM05D003807 ORTHO05D002847 5.7e-10 68.2 134 38.1
CiPaw.10G062400 Carya illinoinensis HOM05D003807 ORTHO05D002847 7.5e-10 67.8 99 43.4
FAN21G0474 Fragaria x ananassa HOM05D003807 ORTHO05D002847 7.5e-10 67.8 118 44.9
Glyma.09G051900 Glycine max HOM05D003807 ORTHO05D002847 9.8e-10 67.4 78 55.1
Medtr2g035850 Medicago truncatula HOM05D003807 ORTHO05D002847 1.3e-09 67.0 100 47.0
Sc05g0004730 Simmondsia chinensis HOM05D003807 ORTHO05D002847 1.3e-09 67.0 74 48.6
Lalb_Chr18g0052151 Lupinus albus HOM05D003807 ORTHO05D002847 1.7e-09 66.6 56 60.7
Actinidia22425 Actinidia chinensis HOM05D003807 ORTHO05D002847 2.2e-09 66.2 102 41.2
Duzib132G1175 Durio zibethinus HOM05D003807 ORTHO05D002847 2.2e-09 66.2 94 43.6
Oeu046931.1 Olea europaea HOM05D003807 ORTHO05D002847 2.2e-09 66.2 110 38.2
TPR.G31858 Trifolium pratense HOM05D003807 ORTHO05D002847 2.8e-09 65.9 100 46.0
VMungo1309G0233 Vigna mungo HOM05D003807 ORTHO05D002847 2.8e-09 65.9 122 43.4
Psat1g149760 Pisum sativum HOM05D003807 ORTHO05D002847 3.7e-09 65.5 103 45.6
Ca_01992_v3 Cicer arietinum L. HOM05D003807 ORTHO05D002847 8.3e-09 64.3 102 43.1
SGA_v2.0_scaffold175G39345 Striga asiatica HOM05D003807 ORTHO05D002847 8.3e-09 64.3 103 42.7
Thecc.02G005300 Theobroma cacao HOM05D003807 ORTHO05D002847 8.3e-09 64.3 94 44.7
Eucgr.K01342 Eucalyptus grandis HOM05D001711 ORTHO05D002847 2.4e-08 62.8 84 46.4
Lalb_Chr12g0208981 Lupinus albus HOM05D003807 ORTHO05D002847 2.4e-08 62.8 115 44.3
ClCG01G025570 Citrullus lanatus HOM05D003807 ORTHO05D002847 3.1e-08 62.4 92 43.5
Glyma.08G087400 Glycine max HOM05D003807 ORTHO05D002847 3.1e-08 62.4 86 47.7
Sed0023526 Sechium edule HOM05D003807 ORTHO05D002847 3.1e-08 62.4 66 54.5
VMungo0251G2884 Vigna mungo HOM05D003807 ORTHO05D002847 3.1e-08 62.4 65 56.9
TWI60G0522 Tripterygium wilfordii HOM05D001711 ORTHO05D002847 4.1e-08 62.0 72 51.4
COL.COLO4_17627 Corchorus olitorius HOM05D003807 ORTHO05D002847 5.4e-08 61.6 62 51.6
Medtr4g094698 Medicago truncatula HOM05D003807 ORTHO05D002847 5.4e-08 61.6 84 47.6
Oeu041444.1 Olea europaea HOM05D003807 ORTHO05D002847 5.4e-08 61.6 87 46.0
Oeu052638.1 Olea europaea HOM05D003807 ORTHO05D002847 5.4e-08 61.6 90 41.1
Phvul.009G241900 Phaseolus vulgaris HOM05D003807 ORTHO05D002847 5.4e-08 61.6 115 39.1
arahy.Tifrunner.gnm1.ann1.H0VTBF Arachis hypogaea HOM05D003807 ORTHO05D002847 7.0e-08 61.2 58 51.7
Phvul.002G189900 Phaseolus vulgaris HOM05D003807 ORTHO05D002847 7.0e-08 61.2 91 45.1
RcHm_v2.0_Chr2g0153531 Rosa chinensis HOM05D003807 ORTHO05D002847 7.0e-08 61.2 54 59.3
A01p22390 Brassica napus HOM05D003807 ORTHO05D002847 1.2e-07 60.5 98 41.8
COL.COLO4_17629 Corchorus olitorius HOM05D003807 ORTHO05D002847 1.2e-07 60.5 78 46.2
Glyma.05G133000 Glycine max HOM05D003807 ORTHO05D002847 1.2e-07 60.5 81 45.7
Sed0022416 Sechium edule HOM05D003807 ORTHO05D002847 1.2e-07 60.5 56 55.4
ECA246G2171 Erigeron canadensis HOM05D003807 ORTHO05D002847 1.6e-07 60.1 85 40.0
Nitab4.5_0002232g0070 Nicotiana tabacum HOM05D003807 ORTHO05D002847 1.6e-07 60.1 69 49.3
CANSAT64G0062 Cannabis sativa HOM05D001711 ORTHO05D002847 2.0e-07 59.7 43 67.4
Gohir.A12G048100 Gossypium hirsutum HOM05D003807 ORTHO05D002847 2.0e-07 59.7 90 42.2
Thecc.01G173400 Theobroma cacao HOM05D001711 ORTHO05D002847 2.0e-07 59.7 75 45.3
TWI32G0059 Tripterygium wilfordii HOM05D003807 ORTHO05D002847 2.0e-07 59.7 43 65.1
Gohir.D12G046900 Gossypium hirsutum HOM05D003807 ORTHO05D002847 2.7e-07 59.3 90 42.2
Gorai.008G049400 Gossypium raimondii HOM05D003807 ORTHO05D002847 2.7e-07 59.3 90 42.2
Sc07g0001950 Simmondsia chinensis HOM05D001711 ORTHO05D002847 2.7e-07 59.3 85 48.2
Aa31LG9G2270 Aethionema arabicum HOM05D003807 ORTHO05D002847 3.5e-07 58.9 61 52.5
TPR.G31240 Trifolium pratense HOM05D003807 ORTHO05D002847 3.5e-07 58.9 90 43.3
TAR626G1107 Trochodendron aralioides HOM05D001711 ORTHO05D002847 3.5e-07 58.9 88 42.0
BcaNung00304 Brassica carinata HOM05D003807 ORTHO05D002847 4.5e-07 58.5 79 46.8
Cfa022497 Carpinus fangiana HOM05D001711 ORTHO05D002847 4.5e-07 58.5 86 46.5
Cpa.g.sc30.129 Carica papaya HOM05D003807 ORTHO05D002847 5.9e-07 58.2 59 55.9
LjContig00081g0007494 Lotus japonicus HOM05D001711 ORTHO05D002847 5.9e-07 58.2 55 56.4
Manes.09G079619 Manihot esculenta HOM05D001711 ORTHO05D002847 5.9e-07 58.2 74 50.0
Oeu003076.1 Olea europaea HOM05D001711 ORTHO05D002847 5.9e-07 58.2 68 47.1
SGA_v2.0_scaffold175G39346 Striga asiatica HOM05D003807 ORTHO05D002847 5.9e-07 58.2 59 49.2
CiPaw.04G072500 Carya illinoinensis HOM05D001711 ORTHO05D002847 7.7e-07 57.8 56 53.6
MELO3C016231.2 Cucumis melo HOM05D001711 ORTHO05D002847 7.7e-07 57.8 117 38.5
Hma1.2p1_0088F.1_g045023 Hydrangea macrophylla HOM05D003807 ORTHO05D002847 7.7e-07 57.8 81 46.9
Hma1.2p1_0088F.1_g045030 Hydrangea macrophylla HOM05D003807 ORTHO05D002847 7.7e-07 57.8 81 46.9
Lsat_1_v5_gn_6_111360 Lactuca sativa HOM05D055215 ORTHO05D002847 1.0e-06 57.4 105 34.3
Nn7g38292 Nelumbo nucifera HOM05D001711 ORTHO05D002847 1.0e-06 57.4 60 50.0
AL3G36350 Arabidopsis lyrata HOM05D003807 ORTHO05D002847 1.3e-06 57.0 75 48.0
AT3G22160 Arabidopsis thaliana HOM05D003807 ORTHO05D002847 1.3e-06 57.0 75 48.0
CiPaw.03G111200 Carya illinoinensis HOM05D001711 ORTHO05D002847 1.3e-06 57.0 89 42.7
CsaV3_4G007280 Cucumis sativus L. HOM05D001711 ORTHO05D002847 1.3e-06 57.0 132 37.1
Rhsim12G0015000 Rhododendron simsii HOM05D001711 ORTHO05D002847 1.3e-06 57.0 79 45.6
Sed0015396 Sechium edule HOM05D001711 ORTHO05D002847 1.3e-06 57.0 92 39.1
Glyma.14G002800 Glycine max HOM05D001711 ORTHO05D002847 1.7e-06 56.6 68 50.0
BraA05t21543Z Brassica rapa HOM05D003807 ORTHO05D002847 2.3e-06 56.2 72 47.2
Haze_13646 Corylus avellana HOM05D001711 ORTHO05D002847 2.3e-06 56.2 88 47.7
Gohir.A11G155800 Gossypium hirsutum HOM05D001711 ORTHO05D002847 2.3e-06 56.2 71 47.9
Manes.08G068801 Manihot esculenta HOM05D001711 ORTHO05D002847 2.3e-06 56.2 100 40.0
Carub.0003s2233 Capsella rubella HOM05D003807 ORTHO05D002847 2.9e-06 55.8 100 40.0
Migut.M00092 Erythranthe guttata HOM05D001711 ORTHO05D002847 2.9e-06 55.8 51 56.9
VMungo0540G2275 Vigna mungo HOM05D001711 ORTHO05D002847 2.9e-06 55.8 76 43.4
BcaC09g49150 Brassica carinata HOM05D003807 ORTHO05D002847 3.8e-06 55.5 72 45.8
A01p33000 Brassica napus HOM05D003807 ORTHO05D002847 3.8e-06 55.5 72 45.8
C01p42110 Brassica napus HOM05D003807 ORTHO05D002847 3.8e-06 55.5 72 45.8
BolC1t04173H Brassica oleracea HOM05D003807 ORTHO05D002847 3.8e-06 55.5 72 45.8
BraA01t03420Z Brassica rapa HOM05D003807 ORTHO05D002847 3.8e-06 55.5 72 45.8
Duzib133G1073 Durio zibethinus HOM05D001711 ORTHO05D002847 3.8e-06 55.5 62 50.0
Thhalv10026244m.g Eutrema salsugineum HOM05D009858 ORTHO05D011870 3.8e-06 55.5 91 44.0
Oeu052639.1 Olea europaea HOM05D003807 ORTHO05D002847 3.8e-06 55.5 110 38.2
Psat5g106560 Pisum sativum HOM05D001711 ORTHO05D002847 3.8e-06 55.5 56 53.6
Potri.016G017900 Populus trichocarpa HOM05D001711 ORTHO05D002847 3.8e-06 55.5 64 48.4
Sabra16G0020100 Salix brachista HOM05D001711 ORTHO05D002847 3.8e-06 55.5 40 62.5
arahy.Tifrunner.gnm1.ann1.W19YV6 Arachis hypogaea HOM05D001711 ORTHO05D002847 5.0e-06 55.1 35 71.4
BcaB06g26318 Brassica carinata HOM05D003807 ORTHO05D002847 5.0e-06 55.1 72 45.8
BcaC05g28098 Brassica carinata HOM05D003807 ORTHO05D002847 5.0e-06 55.1 72 45.8
C05p41250 Brassica napus HOM05D003807 ORTHO05D002847 5.0e-06 55.1 72 45.8
BolC5t32867H Brassica oleracea HOM05D003807 ORTHO05D002847 5.0e-06 55.1 72 45.8
ClCG07G010990 Citrullus lanatus HOM05D001711 ORTHO05D002847 5.0e-06 55.1 116 37.1
Lalb_Chr04g0247001 Lupinus albus HOM05D003807 ORTHO05D002847 5.0e-06 55.1 40 65.0
Nitab4.5_0000170g0400 Nicotiana tabacum HOM05D003807 ORTHO05D002847 5.0e-06 55.1 96 39.6
Sp3g19970 Schrenkiella parvula HOM05D003807 ORTHO05D002847 5.0e-06 55.1 72 45.8
Carub.0007s2113 Capsella rubella HOM05D009858 ORTHO05D011870 6.6e-06 54.7 117 38.5
CAN.G182.24 Capsicum annuum HOM05D001711 ORTHO05D002847 6.6e-06 54.7 89 39.3
Nitab4.5_0002570g0040 Nicotiana tabacum HOM05D001711 ORTHO05D002847 6.6e-06 54.7 42 57.1
DCAR_013031 Daucus carota HOM05D001711 ORTHO05D002847 8.6e-06 54.3 69 44.9
Dinv08378 Davidia involucrata HOM05D001711 ORTHO05D002847 8.6e-06 54.3 62 48.4
Duzib211G0113 Durio zibethinus HOM05D001711 ORTHO05D002847 8.6e-06 54.3 86 39.5
Hma1.2p1_0088F.1_g045026 Hydrangea macrophylla HOM05D003807 ORTHO05D002847 8.6e-06 54.3 63 54.0
Hma1.2p1_0088F.1_g045040 Hydrangea macrophylla HOM05D003807 ORTHO05D002847 8.6e-06 54.3 63 54.0
Medtr3g081500 Medicago truncatula HOM05D001711 ORTHO05D002847 8.6e-06 54.3 76 43.4
Peaxi162Scf00047g00243 Petunia axillaris HOM05D003807 ORTHO05D002847 8.6e-06 54.3 101 38.6


User provided reference genes

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