Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 4.3e-127 458.0 230 100.0
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 4.8e-110 401.4 201 99.0
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 1.4e-106 389.8 201 95.5
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 2.2e-94 349.4 201 85.6
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 3.1e-93 345.5 201 84.6
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 1.8e-88 329.7 202 78.2
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 7.0e-85 317.8 198 76.8
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 1.2e-84 317.0 198 75.3
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 1.2e-84 317.0 198 75.8
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 1.2e-84 317.0 201 77.1
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 1.6e-84 316.6 198 75.8
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 2.0e-84 316.2 201 74.6
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 4.5e-84 315.1 201 75.6
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 1.0e-83 313.9 202 73.3
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 1.7e-83 313.2 201 75.1
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 1.7e-83 313.2 198 73.7
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 3.8e-83 312.0 202 72.3
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 8.5e-83 310.8 201 77.1
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 8.5e-83 310.8 202 73.3
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.1e-82 310.5 203 72.9
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 2.5e-82 309.3 196 78.1
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 2.5e-82 309.3 202 73.8
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 2.5e-82 309.3 212 71.7
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 2.5e-82 309.3 204 73.5
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 4.2e-82 308.5 201 73.6
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 9.4e-82 307.4 205 72.2
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 9.4e-82 307.4 205 72.2
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 1.2e-81 307.0 205 71.7
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 2.1e-81 306.2 198 73.7
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 2.1e-81 306.2 203 72.9
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 1.8e-80 303.1 201 71.1
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 2.3e-80 302.8 205 71.7
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 3.0e-80 302.4 198 73.2
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 3.0e-80 302.4 199 71.4
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 6.7e-80 301.2 201 70.1
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 6.7e-80 301.2 202 72.3
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 8.8e-80 300.8 198 72.7
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 1.5e-79 300.1 201 71.1
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 2.0e-79 299.7 202 71.8
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 3.3e-79 298.9 201 70.6
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 5.7e-79 298.1 198 72.2
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 2.2e-78 296.2 202 71.3
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 2.2e-78 296.2 201 70.1
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 2.8e-78 295.8 218 66.1
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 1.8e-77 293.1 201 67.7
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 3.1e-77 292.4 198 69.7
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 5.3e-77 291.6 211 65.9
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 7.0e-77 291.2 214 67.8
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 7.0e-77 291.2 201 75.1
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 7.0e-77 291.2 201 67.2
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 9.1e-77 290.8 200 71.0
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 9.1e-77 290.8 201 69.2
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.2e-76 290.4 200 71.0
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 1.2e-76 290.4 207 66.2
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 2.7e-76 289.3 206 66.0
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 3.5e-76 288.9 201 67.7
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 4.5e-76 288.5 216 65.7
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 7.7e-76 287.7 198 72.2
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 6.5e-75 284.6 219 63.5
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 1.1e-74 283.9 211 65.9
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 2.5e-74 282.7 217 64.1
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 3.2e-74 282.3 201 69.2
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 3.2e-74 282.3 202 67.8
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 7.2e-74 281.2 202 72.8
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 9.4e-74 280.8 182 76.9
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 1.2e-73 280.4 205 68.3
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 3.6e-73 278.9 198 68.2
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 4.7e-73 278.5 233 59.7
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 4.7e-73 278.5 201 72.1
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 6.1e-73 278.1 201 64.7
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 4.0e-72 275.4 201 67.7
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 4.0e-72 275.4 198 66.7
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 2.0e-71 273.1 198 64.6
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 7.5e-71 271.2 202 66.3
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 1.3e-70 270.4 201 64.2
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 2.4e-69 266.2 168 78.6
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 9.1e-69 264.2 199 60.3
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 2.0e-68 263.1 269 52.4
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 4.5e-68 261.9 201 65.7
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 4.5e-68 261.9 202 62.9
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 1.3e-67 260.4 184 66.8
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 3.8e-67 258.8 233 57.1
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 1.6e-65 253.4 201 62.7
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 3.6e-65 252.3 212 60.4
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 1.7e-62 243.4 210 58.6
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 2.2e-62 243.0 207 58.5
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 2.7e-60 236.1 207 56.5
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 3.5e-60 235.7 146 79.5
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 6.1e-57 224.9 188 63.3
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 7.5e-55 218.0 175 61.1
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 7.5e-55 218.0 206 49.5
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 3.7e-54 215.7 218 53.7
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 6.4e-54 214.9 198 51.0
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 5.4e-53 211.8 202 50.5
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 1.7e-51 206.8 149 68.5
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 3.9e-51 205.7 185 56.8
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 3.3e-50 202.6 135 73.3
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 2.6e-47 193.0 198 46.0
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 1.7e-46 190.3 201 51.2
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 4.6e-44 182.2 198 45.5
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 6.0e-44 181.8 117 72.6
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 2.0e-39 166.8 138 59.4
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 1.7e-38 163.7 106 69.8
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.7e-38 163.7 145 59.3
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 3.9e-35 152.5 96 75.0
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 5.6e-34 148.7 95 76.8
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 2.1e-33 146.7 106 67.0
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 2.4e-32 143.3 96 74.0
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 1.3e-30 137.5 114 57.9
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 1.9e-29 133.7 94 71.3
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 9.2e-29 131.3 208 38.9
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 4.6e-28 129.0 96 63.5
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 3.3e-26 122.9 92 64.1
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.4e-24 117.5 93 63.4
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 2.9e-22 109.8 68 75.0
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 2.9e-22 109.8 90 60.0
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 1.1e-21 107.8 81 59.3
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 3.2e-21 106.3 95 61.1
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 9.3e-21 104.8 181 33.1
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 1.3e-17 94.4 230 28.3
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-15 87.8 55 65.5
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 5.1e-11 72.4 53 60.4


User provided reference genes

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