Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g009170 Solanum pennellii HOM05D005682 ORTHO05D007050 0.0e+00 1929.1 960 100.0
Peaxi162Scf00363g00730 Petunia axillaris HOM05D005682 ORTHO05D007050 0.0e+00 1394.4 918 76.9
Solyc02g055460.3 Solanum lycopersicum HOM05D005682 ORTHO05D007050 0.0e+00 1309.3 703 94.3
CAN.G157.16 Capsicum annuum HOM05D005682 ORTHO05D007050 0.0e+00 1287.3 846 79.4
Nitab4.5_0000139g0140 Nicotiana tabacum HOM05D005682 ORTHO05D007050 0.0e+00 1249.6 795 80.0
Oeu033538.1 Olea europaea HOM05D005682 ORTHO05D007050 2.3e-238 829.7 951 49.3
GSVIVG01010197001 Vitis vinifera HOM05D005682 ORTHO05D007050 1.8e-227 793.5 957 47.2
MSTRG.433 Avicennia marina HOM05D005682 ORTHO05D007050 4.9e-225 785.4 949 46.2
Haze_11722 Corylus avellana HOM05D005682 ORTHO05D007050 2.2e-217 760.0 969 44.6
Actinidia04079 Actinidia chinensis HOM05D005682 ORTHO05D007050 3.8e-217 759.2 996 45.7
Thecc.02G161600 Theobroma cacao HOM05D005682 ORTHO05D007050 3.8e-217 759.2 937 46.5
TAR622G0093 Trochodendron aralioides HOM05D005682 ORTHO05D007050 2.4e-216 756.5 983 44.2
Migut.L00859 Erythranthe guttata HOM05D005682 ORTHO05D007050 5.5e-216 755.4 940 45.2
Prupe.1G345800 Prunus persica HOM05D005682 ORTHO05D007050 1.8e-214 750.4 974 44.4
Nitab4.5_0028170g0010 Nicotiana tabacum HOM05D005682 ORTHO05D007050 3.0e-214 749.6 525 75.2
Lj6A721G56 Lonicera japonica HOM05D005682 ORTHO05D007050 6.7e-214 748.4 1002 44.6
Duzib052G0545 Durio zibethinus HOM05D005682 ORTHO05D007050 2.5e-213 746.5 952 44.9
Potri.007G070400 Populus trichocarpa HOM05D005682 ORTHO05D007050 3.3e-213 746.1 945 45.1
Duzib132G1218 Durio zibethinus HOM05D005682 ORTHO05D007050 6.9e-211 738.4 940 45.1
CiPaw.05G167300 Carya illinoinensis HOM05D005682 ORTHO05D007050 1.2e-210 737.6 973 44.2
Ciclev10030666m.g Citrus clementina HOM05D005682 ORTHO05D007050 2.6e-210 736.5 929 45.3
Sabra07G0059000 Salix brachista HOM05D005682 ORTHO05D007050 1.9e-208 730.3 939 45.2
DCAR_002567 Daucus carota HOM05D005682 ORTHO05D007050 9.3e-208 728.0 955 43.8
MD13G1007100 Malus domestica HOM05D005682 ORTHO05D007050 3.9e-206 722.6 932 43.8
RcHm_v2.0_Chr4g0446491 Rosa chinensis HOM05D005682 ORTHO05D007050 1.5e-205 720.7 939 43.3
FvH4_4g36771 Fragaria vesca HOM05D005682 ORTHO05D007050 1.1e-203 714.5 952 43.0
Gohir.A13G059600 Gossypium hirsutum HOM05D005682 ORTHO05D007050 5.9e-202 708.8 930 44.3
Gorai.013G070900 Gossypium raimondii HOM05D005682 ORTHO05D007050 5.0e-201 705.7 931 44.0
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 1.9e-200 703.7 951 43.4
Gohir.D13G062400 Gossypium hirsutum HOM05D005682 ORTHO05D007050 9.4e-200 701.4 931 44.1
SalBow2G1379 Salvia bowleyana HOM05D005682 ORTHO05D007050 3.6e-199 699.5 985 41.8
Eucgr.J00855 Eucalyptus grandis HOM05D005682 ORTHO05D007050 6.1e-199 698.7 963 41.5
Glyma.11G102200 Glycine max HOM05D005682 ORTHO05D007050 4.3e-197 692.6 944 42.6
CANSAT64G0530 Cannabis sativa HOM05D005682 ORTHO05D007050 2.2e-196 690.3 967 42.5
FAN17G1521 Fragaria x ananassa HOM05D005682 ORTHO05D007050 1.2e-194 684.5 937 41.5
Rhsim09G0074000 Rhododendron simsii HOM05D005682 ORTHO05D007050 6.5e-193 678.7 979 42.6
Manes.11G108701 Manihot esculenta HOM05D005682 ORTHO05D007050 1.1e-192 677.9 933 43.2
FAN07G1253 Fragaria x ananassa HOM05D005682 ORTHO05D007050 4.7e-191 672.5 929 41.4
TWI74G0147 Tripterygium wilfordii HOM05D005682 ORTHO05D007050 2.3e-190 670.2 953 41.1
Nn4g24940 Nelumbo nucifera HOM05D005682 ORTHO05D007050 3.0e-190 669.8 935 42.1
HanXRQChr17g0540811 Helianthus annuus HOM05D005682 ORTHO05D007050 1.5e-189 667.5 971 41.2
ECA246G2025 Erigeron canadensis HOM05D005682 ORTHO05D007050 7.4e-189 665.2 951 40.8
Phvul.011G031200 Phaseolus vulgaris HOM05D005682 ORTHO05D007050 9.1e-187 658.3 935 41.1
VMungo1127G0377 Vigna mungo HOM05D005682 ORTHO05D007050 2.6e-186 656.8 925 40.8
vmacro10900 Vaccinium macrocarpon HOM05D005682 ORTHO05D007050 2.9e-185 653.3 1093 39.3
ClCG09G004600 Citrullus lanatus HOM05D005682 ORTHO05D007050 2.3e-182 643.7 945 40.5
CsaV3_7G030540 Cucumis sativus L. HOM05D005682 ORTHO05D007050 2.3e-182 643.7 945 40.1
QL03p043857 Quercus lobata HOM05D005682 ORTHO05D007050 2.3e-182 643.7 1270 34.3
PSO063G1542 Papaver somniferum HOM05D005682 ORTHO05D007050 1.5e-181 641.0 980 39.6
MELO3C023602.2 Cucumis melo HOM05D005682 ORTHO05D007050 1.3e-180 637.9 945 40.1
Lalb_Chr01g0001491 Lupinus albus HOM05D005682 ORTHO05D007050 2.8e-180 636.7 932 40.8
Lsat_1_v5_gn_3_33580 Lactuca sativa HOM05D005682 ORTHO05D007050 4.5e-178 629.4 957 39.9
PSO782G3049 Papaver somniferum HOM05D005682 ORTHO05D007050 1.3e-177 627.9 974 39.5
PGR044G2237 Punica granatum HOM05D005682 ORTHO05D007050 1.3e-177 627.9 960 39.9
Sed0007950 Sechium edule HOM05D005682 ORTHO05D007050 1.1e-176 624.8 947 39.3
Lj3g0015709 Lotus japonicus HOM05D005682 ORTHO05D007050 1.9e-176 624.0 973 39.7
arahy.Tifrunner.gnm1.ann1.3I7IYH Arachis hypogaea HOM05D005682 ORTHO05D007050 5.5e-176 622.5 946 40.8
Aqoxy2G03805 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 4.7e-175 619.4 946 40.4
TPR.G32358 Trifolium pratense HOM05D005682 ORTHO05D007050 2.0e-173 614.0 961 39.0
Sc06g0007890 Simmondsia chinensis HOM05D005682 ORTHO05D007050 7.5e-173 612.1 940 38.6
Hund13152 Selenicereus undatus HOM05D005682 ORTHO05D007050 1.3e-172 611.3 941 39.1
Ca_03025_v3 Cicer arietinum L. HOM05D005682 ORTHO05D007050 1.1e-171 608.2 920 39.9
THA.LOC104826522 Tarenaya hassleriana HOM05D005682 ORTHO05D007050 1.0e-169 601.7 947 39.0
Medtr4g074610 Medicago truncatula HOM05D005682 ORTHO05D007050 2.5e-168 597.0 974 36.2
ATR0618G435 Amborella trichopoda HOM05D005682 ORTHO05D000625 4.0e-166 589.7 953 39.2
AL3G33230 Arabidopsis lyrata HOM05D005682 ORTHO05D007050 4.4e-165 586.3 934 39.5
Carub.0003s1966 Capsella rubella HOM05D005682 ORTHO05D007050 4.8e-164 582.8 922 38.2
AT3G19780 Arabidopsis thaliana HOM05D005682 ORTHO05D007050 4.5e-162 576.2 930 39.0
BolC5t33225H Brassica oleracea HOM05D005682 ORTHO05D007050 1.9e-160 570.9 977 36.3
Sp3g17800 Schrenkiella parvula HOM05D005682 ORTHO05D007050 5.5e-160 569.3 903 38.3
C05p45010 Brassica napus HOM05D005682 ORTHO05D007050 7.2e-160 568.9 935 37.1
Thhalv10019965m.g Eutrema salsugineum HOM05D005682 ORTHO05D007050 9.5e-160 568.5 927 38.0
BcaB06g26047 Brassica carinata HOM05D005682 ORTHO05D007050 2.8e-159 567.0 931 37.5
BraA05t21829Z Brassica rapa HOM05D005682 ORTHO05D007050 1.4e-158 564.7 938 37.2
A05p29780 Brassica napus HOM05D005682 ORTHO05D007050 4.0e-158 563.1 935 37.1
EL10Ac9g20684 Beta vulgaris HOM05D005682 ORTHO05D007050 2.2e-156 557.4 940 37.1
Ah.14g085910 Amaranthus hybridus HOM05D005682 ORTHO05D007050 5.4e-155 552.7 938 36.4
Dinv11710 Davidia involucrata HOM05D005682 ORTHO05D007050 9.5e-152 542.0 501 56.9
BcaC05g28416 Brassica carinata HOM05D005682 ORTHO05D007050 6.4e-148 529.3 934 36.2
Cc11_g00090 Coffea canephora HOM05D005682 ORTHO05D007050 6.4e-148 529.3 723 43.4
AUR62018178 Chenopodium quinoa HOM05D005682 ORTHO05D007050 5.4e-147 526.2 978 35.7
AUR62038663 Chenopodium quinoa HOM05D005682 ORTHO05D007050 9.2e-147 525.4 961 35.9
Aa31LG8G6560 Aethionema arabicum HOM05D005682 ORTHO05D007050 3.9e-145 520.0 926 35.9
Cfa008712 Carpinus fangiana HOM05D005682 ORTHO05D007050 1.7e-137 494.6 695 43.2
Zm00001eb221340 Zea mays HOM05D005682 ORTHO05D007050 2.2e-132 477.6 998 32.3
Hma1.2p1_0499F.1_g166820 Hydrangea macrophylla HOM05D005682 ORTHO05D007050 1.2e-130 471.9 467 52.5
CARHR095300 Cardamine hirsuta HOM05D005682 ORTHO05D007050 2.5e-128 464.2 800 37.2
CDE04G1407 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 5.8e-117 426.4 743 36.2
COL.COLO4_08120 Corchorus olitorius HOM05D005682 ORTHO05D007050 4.2e-115 420.2 836 35.6
unitig_699.g19973 Utricularia gibba HOM05D005682 ORTHO05D007050 4.3e-112 410.2 941 32.8
SEGI_38899 Sequoiadendron giganteum HOM05D005682 ORTHO05D007050 1.1e-110 405.6 995 30.9
arahy.Tifrunner.gnm1.ann1.H4B4B0 Arachis hypogaea HOM05D005682 ORTHO05D007050 3.7e-103 380.6 632 38.9
HPP92_008567 Vanilla planifolia HOM05D005682 ORTHO05D007050 3.2e-99 367.5 515 40.0
BraA05t21816Z Brassica rapa HOM05D005682 ORTHO05D007050 2.3e-97 361.3 664 34.5
Os10g0485100 Oryza sativa ssp. japonica HOM05D005682 ORTHO05D007050 3.3e-96 357.5 475 40.0
Nitab4.5_0002392g0030 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.4e-94 352.1 204 85.3
Psat7g173480 Pisum sativum HOM05D005682 ORTHO05D007050 1.8e-94 351.7 645 37.2
BcaC05g28417 Brassica carinata HOM05D005682 ORTHO05D007050 3.9e-89 334.0 472 40.7
Dinv11711 Davidia involucrata HOM05D005682 ORTHO05D007050 5.5e-83 313.5 328 54.3
CSS0028316 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 2.2e-76 291.6 277 52.3
Atru.chr11.1182 Acer truncatum HOM05D005682 ORTHO05D007050 5.7e-72 276.9 442 39.8
CSS0031646 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 6.3e-71 273.5 402 43.0
CAN.G157.17 Capsicum annuum HOM05D005682 ORTHO05D007050 3.5e-69 267.7 170 77.1
SHI13893 Sapria himalayana HOM05D005682 ORTHO05D007050 5.9e-69 266.9 562 33.3
AagrBONN_evm.TU.Sc2ySwM_340.174 Anthoceros agrestis HOM05D005682 ORTHO05D007050 1.4e-65 255.8 929 25.7
Cc11_g00100 Coffea canephora HOM05D005682 ORTHO05D007050 3.0e-57 228.0 207 55.1
HPP92_008562 Vanilla planifolia HOM05D005682 ORTHO05D007050 2.0e-53 215.3 582 30.6
CSS0001307 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 5.9e-45 187.2 219 47.9
SHI13892 Sapria himalayana HOM05D005682 ORTHO05D007050 1.7e-39 169.1 163 52.1
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 2.5e-35 155.2 404 30.7
Cc11_g04390 Coffea canephora HOM05D005682 ORTHO05D007050 5.0e-28 131.0 153 42.5
Pp3c7_6630 Physcomitrium patens HOM05D005682 ORTHO05D007050 3.3e-27 128.3 778 24.7
BcaC05g28408 Brassica carinata HOM05D005682 ORTHO05D007050 3.6e-18 98.2 119 44.5
BcaC05g28407 Brassica carinata HOM05D005682 ORTHO05D007050 4.7e-18 97.8 127 36.2
C05p44920 Brassica napus HOM05D005682 ORTHO05D007050 5.2e-17 94.4 168 30.4
CARHR095290 Cardamine hirsuta HOM05D005682 ORTHO05D007050 8.9e-17 93.6 96 42.7
SHI13894 Sapria himalayana HOM05D005682 ORTHO05D007050 2.6e-16 92.0 152 34.2
Psat4g043640 Pisum sativum HOM05D005682 ORTHO05D007050 3.9e-12 78.2 117 37.6
Nitab4.5_0002392g0020 Nicotiana tabacum HOM05D005682 ORTHO05D007050 5.2e-09 67.8 46 67.4
HPP92_008566 Vanilla planifolia HOM05D005682 ORTHO05D007050 8.9e-09 67.0 171 32.7
SEGI_17937 Sequoiadendron giganteum HOM05D002497 ORTHO05D002697 1.7e-07 62.8 165 29.7
ATR1089G083 Amborella trichopoda HOM05D002497 ORTHO05D002697 1.1e-06 60.1 166 29.5
Medtr7g011850 Medicago truncatula HOM05D002497 ORTHO05D002697 1.9e-06 59.3 150 30.0
Potri.004G125800 Populus trichocarpa HOM05D002497 ORTHO05D002697 1.9e-06 59.3 153 30.1
Glyma.06G324900 Glycine max HOM05D002497 ORTHO05D002697 3.2e-06 58.5 238 26.5
Psat1g003240 Pisum sativum HOM05D002497 ORTHO05D002697 3.2e-06 58.5 179 28.5
TPR.G25495 Trifolium pratense HOM05D002497 ORTHO05D002697 5.4e-06 57.8 173 31.2
Aa31LG6G8110 Aethionema arabicum HOM05D002497 ORTHO05D002697 7.1e-06 57.4 168 32.7
Cc07_g03780 Coffea canephora HOM05D002497 ORTHO05D002697 7.1e-06 57.4 151 30.5
QL02p039295 Quercus lobata HOM05D002497 ORTHO05D002697 7.1e-06 57.4 153 30.7
SHI16731 Sapria himalayana HOM05D002497 ORTHO05D002697 9.3e-06 57.0 150 29.3
SGA_v2.0_scaffold118G32587 Striga asiatica HOM05D002497 ORTHO05D002697 9.3e-06 57.0 150 26.7


User provided reference genes

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