Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g009090 Solanum pennellii HOM05D008037 ORTHO05D004271 5.0e-142 507.7 240 100.0
SHI36397 Sapria himalayana HOM05D008037 ORTHO05D004271 4.0e-59 232.3 142 81.0
Medtr4g006040 Medicago truncatula HOM05D008037 ORTHO05D009823 9.3e-56 221.1 142 78.9
BcaC05g27379 Brassica carinata HOM05D008016 ORTHO05D021751 1.5e-45 187.2 185 61.1
Sed0000516 Sechium edule HOM05D008037 ORTHO05D004271 2.3e-38 163.3 108 77.8
arahy.Tifrunner.gnm1.ann1.20TFSQ Arachis hypogaea HOM05D008037 ORTHO05D004271 1.9e-37 160.2 100 78.0
arahy.Tifrunner.gnm1.ann1.P2FSG5 Arachis hypogaea HOM05D008037 ORTHO05D004271 1.9e-37 160.2 100 78.0
MBI08_g48225_MAGBIO Magnolia biondii HOM05D008037 ORTHO05D004271 1.9e-37 160.2 100 79.0
Nitab4.5_0001727g0130 Nicotiana tabacum HOM05D008037 ORTHO05D004271 7.4e-37 158.3 100 78.0
Lj1g0013448 Lotus japonicus HOM05D007952 ORTHO05D009823 9.6e-37 157.9 82 92.7
Hund25912 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund27633 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund27757 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund27833 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund28332 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund28440 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund28538 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund28614 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund28956 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund28981 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund29028 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund29091 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund29181 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund29249 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund29256 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund29263 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund29290 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund29318 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund29436 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund29853 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund30002 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund30263 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund30448 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund30632 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
Hund30993 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.8e-35 153.7 101 76.2
EL10As10g23963 Beta vulgaris HOM05D008037 ORTHO05D004271 3.1e-35 152.9 101 76.2
Lj4g0016112 Lotus japonicus HOM05D007952 ORTHO05D009823 9.0e-35 151.4 82 90.2
Nitab4.5_0006502g0070 Nicotiana tabacum HOM05D008037 ORTHO05D004271 1.7e-33 147.1 91 79.1
BolSC35t60682H Brassica oleracea HOM05D008016 ORTHO05D010588 2.9e-33 146.4 200 46.0
arahy.Tifrunner.gnm1.ann1.ASR258 Arachis hypogaea HOM05D008037 ORTHO05D004271 4.6e-31 139.0 100 71.0
Solyc00g500344.1 Solanum lycopersicum HOM05D008037 ORTHO05D004271 1.1e-29 134.4 83 80.7
Sed0021589 Sechium edule HOM05D008016 ORTHO05D004271 4.3e-29 132.5 206 45.1
BolSC29t60497H Brassica oleracea HOM05D008016 ORTHO05D010588 7.4e-29 131.7 66 92.4
BolSC29t60538H Brassica oleracea HOM05D008016 ORTHO05D010986 7.4e-29 131.7 66 92.4
BolSC29t60557H Brassica oleracea HOM05D008016 ORTHO05D010588 7.4e-29 131.7 66 92.4
BolSC29t60625H Brassica oleracea HOM05D008016 ORTHO05D010588 7.4e-29 131.7 66 92.4
BolSC44t60813H Brassica oleracea HOM05D008016 ORTHO05D010588 7.4e-29 131.7 66 92.4
BolSC45t60920H Brassica oleracea HOM05D008016 ORTHO05D010588 7.4e-29 131.7 66 92.4
BolSC46t60968H Brassica oleracea HOM05D008016 ORTHO05D010588 7.4e-29 131.7 66 92.4
BraSC103t45418Z Brassica rapa HOM05D008016 ORTHO05D010588 7.4e-29 131.7 66 92.4
BraSC25t45901Z Brassica rapa HOM05D008016 ORTHO05D010588 7.4e-29 131.7 66 92.4
BraSC25t45922Z Brassica rapa HOM05D008016 ORTHO05D010588 7.4e-29 131.7 66 92.4
arahy.Tifrunner.gnm1.ann1.JURL6Q Arachis hypogaea HOM05D001966 ORTHO05D007227 3.7e-28 129.4 163 46.6
Sopen10g016570 Solanum pennellii HOM05D008037 ORTHO05D004271 1.4e-27 127.5 66 87.9
arahy.Tifrunner.gnm1.ann1.XGYT8C Arachis hypogaea HOM05D008037 ORTHO05D004271 9.0e-27 124.8 67 88.1
Nitab4.5_0027992g0040 Nicotiana tabacum HOM05D008037 ORTHO05D004271 2.0e-26 123.6 67 88.1
Lsat_1_v5_gn_4_63021 Lactuca sativa HOM05D007952 ORTHO05D009823 7.2e-24 115.2 87 69.0
Nitab4.5_0008665g0060 Nicotiana tabacum HOM05D008037 ORTHO05D004271 1.6e-23 114.0 88 65.9
CAN.G593.3 Capsicum annuum HOM05D001966 ORTHO05D004271 2.7e-23 113.2 56 92.9
Psat0s1116g0080 Pisum sativum HOM05D004182 ORTHO05D007321 4.6e-23 112.5 191 42.4
Nitab4.5_0001170g0070 Nicotiana tabacum HOM05D008037 ORTHO05D004271 2.3e-22 110.2 71 76.1
arahy.Tifrunner.gnm1.ann1.LBLK2X Arachis hypogaea HOM05D008037 ORTHO05D004271 5.1e-22 109.0 66 78.8
BNapus_Darmor_BZH_scaffold_69p00020 Brassica napus HOM05D008016 ORTHO05D010588 4.8e-20 102.4 51 92.2
CARHR282370 Cardamine hirsuta HOM05D008016 ORTHO05D010588 4.8e-20 102.4 51 92.2
arahy.Tifrunner.gnm1.ann1.KSIE27 Arachis hypogaea HOM05D008037 ORTHO05D004271 1.1e-19 101.3 72 69.4
Nitab4.5_0000066g0170 Nicotiana tabacum HOM05D008037 ORTHO05D004271 4.1e-19 99.4 92 57.6
BolSC47t61058H Brassica oleracea HOM05D008016 ORTHO05D010588 2.0e-18 97.1 50 94.0
Nitab4.5_0012234g0010 Nicotiana tabacum HOM05D008037 ORTHO05D004271 4.5e-18 95.9 100 53.0
Nitab4.5_0004841g0080 Nicotiana tabacum HOM05D008037 ORTHO05D004271 1.0e-17 94.7 59 74.6
Solyc03g058260.1 Solanum lycopersicum HOM05D008037 ORTHO05D004271 1.0e-17 94.7 64 67.2
Zm00001eb441600 Zea mays HOM05D008037 ORTHO05D004271 1.3e-17 94.4 56 78.6
arahy.Tifrunner.gnm1.ann1.TT5YJH Arachis hypogaea HOM05D007952 ORTHO05D009823 3.8e-17 92.8 46 95.7
CDE02G0533 Ceratophyllum demersum HOM05D008037 ORTHO05D004271 6.5e-17 92.0 46 89.1
arahy.Tifrunner.gnm1.ann1.B37VQ6 Arachis hypogaea HOM05D007952 ORTHO05D009823 8.5e-17 91.7 46 93.5
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 8.5e-17 91.7 45 95.6
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 8.5e-17 91.7 45 95.6
SabraPtG0006400 Salix brachista HOM05D012647 ORTHO05D014727 8.5e-17 91.7 46 95.7
arahy.Tifrunner.gnm1.ann1.8D90VP Arachis hypogaea HOM05D001966 ORTHO05D007227 1.2e-15 87.8 46 84.8
arahy.Tifrunner.gnm1.ann1.VZYH4A Arachis hypogaea HOM05D008016 ORTHO05D010588 1.2e-15 87.8 46 84.8
arahy.Tifrunner.gnm1.ann1.WI2XKB Arachis hypogaea HOM05D001966 ORTHO05D007227 1.2e-15 87.8 46 84.8
arahy.Tifrunner.gnm1.ann1.ZMH4QB Arachis hypogaea HOM05D001966 ORTHO05D010986 1.2e-15 87.8 46 84.8
arahy.Tifrunner.gnm1.ann1.ZHN7AL Arachis hypogaea HOM05D001966 ORTHO05D007227 1.6e-15 87.4 46 82.6
Nitab4.5_0001986g0120 Nicotiana tabacum HOM05D008037 ORTHO05D004271 7.9e-15 85.1 106 49.1
Peaxi162Scf00475g00112 Petunia axillaris HOM05D007952 ORTHO05D004271 1.4e-14 84.3 44 86.4
BolSC35t60714H Brassica oleracea HOM05D008016 ORTHO05D004271 8.8e-14 81.6 62 66.1
BolSC49t61153H Brassica oleracea HOM05D008016 ORTHO05D010588 8.8e-14 81.6 62 66.1
BraSC103t45496Z Brassica rapa HOM05D008016 ORTHO05D004271 8.8e-14 81.6 62 66.1
BolSC44t60832H Brassica oleracea HOM05D008016 ORTHO05D010588 1.1e-13 81.3 61 67.2
CsaV3_UNG196490 Cucumis sativus L. HOM05D008016 ORTHO05D010588 3.3e-13 79.7 63 60.3
EL10Ac6g15366 Beta vulgaris HOM05D007952 ORTHO05D009823 5.7e-13 79.0 45 82.2
CAN.G262.4 Capsicum annuum HOM05D007952 ORTHO05D009823 5.7e-13 79.0 52 73.1
Peaxi162Scf00210g00153 Petunia axillaris HOM05D008037 ORTHO05D004271 4.8e-12 75.9 47 78.7
Solyc09g011150.1 Solanum lycopersicum HOM05D008037 ORTHO05D004271 4.8e-12 75.9 38 89.5
EL10Ac6g13942 Beta vulgaris HOM05D008037 ORTHO05D004271 1.4e-11 74.3 51 72.5
Solyc03g150126.1 Solanum lycopersicum HOM05D008037 ORTHO05D004271 2.4e-11 73.6 70 57.1
Lsat_1_v5_gn_2_20521 Lactuca sativa HOM05D001966 ORTHO05D007227 4.1e-11 72.8 33 97.0
Lsat_1_v5_gn_4_147840 Lactuca sativa HOM05D008016 ORTHO05D010588 4.1e-11 72.8 33 97.0
Lsat_1_v5_gn_5_181880 Lactuca sativa HOM05D001966 ORTHO05D007227 4.1e-11 72.8 33 97.0
arahy.Tifrunner.gnm1.ann1.54SFA9 Arachis hypogaea HOM05D008037 ORTHO05D004271 5.3e-11 72.4 52 69.2
Nitab4.5_0008813g0010 Nicotiana tabacum HOM05D007952 ORTHO05D004271 5.3e-11 72.4 41 82.9
Gohir.A07G174766 Gossypium hirsutum HOM05D008016 ORTHO05D004271 6.9e-11 72.0 44 72.7
BcaB02g11353 Brassica carinata HOM05D007952 ORTHO05D009823 9.1e-11 71.6 66 54.5
arahy.Tifrunner.gnm1.ann1.WFJR7S Arachis hypogaea HOM05D008037 ORTHO05D004271 1.2e-10 71.2 59 61.0
Gohir.A09G103364 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.5e-10 70.9 41 78.0
SEGI_26586 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.5e-10 70.9 66 59.1
Nitab4.5_0000317g0030 Nicotiana tabacum HOM05D010190 ORTHO05D009823 2.6e-10 70.1 39 87.2
SEGI_28289 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 5.9e-10 68.9 46 73.9
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 7.7e-10 68.6 65 53.8
BolSC45t60899H Brassica oleracea HOM05D008016 ORTHO05D004271 1.0e-09 68.2 53 69.8
CAN.G100.35 Capsicum annuum HOM05D008016 ORTHO05D010588 1.7e-09 67.4 52 57.7
CAN.G1298.17 Capsicum annuum HOM05D001070 ORTHO05D004271 2.2e-09 67.0 38 84.2
Lalb_Chr17g0346961 Lupinus albus HOM05D008016 ORTHO05D010588 2.2e-09 67.0 32 93.8
Nitab4.5_0001761g0150 Nicotiana tabacum HOM05D008037 ORTHO05D004271 6.5e-09 65.5 31 90.3
Nitab4.5_0006096g0010 Nicotiana tabacum HOM05D007952 ORTHO05D004271 8.5e-09 65.1 32 96.9
Lalb_Chr03g0039361 Lupinus albus HOM05D008016 ORTHO05D004271 1.1e-08 64.7 38 76.3
Lalb_Chr20g0115041 Lupinus albus HOM05D008016 ORTHO05D004271 1.1e-08 64.7 55 58.2
RhsimPtG0005300 Rhododendron simsii HOM05D001966 ORTHO05D007227 1.4e-08 64.3 31 90.3
Lsat_1_v5_gn_2_98441 Lactuca sativa HOM05D008016 ORTHO05D004271 1.9e-08 63.9 32 84.4
VMungo0720G2248 Vigna mungo HOM05D001966 ORTHO05D007227 2.5e-08 63.5 31 96.8
VMungo1233G0001 Vigna mungo HOM05D001966 ORTHO05D010986 2.5e-08 63.5 31 96.8
CAN.G1648.17 Capsicum annuum HOM05D001966 ORTHO05D007227 3.2e-08 63.2 31 93.5
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 3.2e-08 63.2 32 84.4
Peaxi162Scf00136g00086 Petunia axillaris HOM05D007952 ORTHO05D004271 4.2e-08 62.8 33 90.9
FAN22G1916 Fragaria x ananassa HOM05D008037 ORTHO05D004271 5.5e-08 62.4 32 84.4
Potri.008G221801 Populus trichocarpa HOM05D008037 ORTHO05D004271 5.5e-08 62.4 32 84.4
Sabra01G0028500 Salix brachista HOM05D000653 ORTHO05D002177 5.5e-08 62.4 33 90.9
arahy.Tifrunner.gnm1.ann1.KJ09M7 Arachis hypogaea HOM05D008037 ORTHO05D004271 9.4e-08 61.6 32 84.4
C02p28730 Brassica napus HOM05D008016 ORTHO05D010588 1.6e-07 60.8 30 86.7
Lsat_1_v5_gn_5_36201 Lactuca sativa HOM05D048309 ORTHO05D031508 2.1e-07 60.5 28 100.0
Nitab4.5_0007400g0090 Nicotiana tabacum HOM05D008016 ORTHO05D004271 2.1e-07 60.5 28 100.0
BolSC49t61132H Brassica oleracea HOM05D001966 ORTHO05D010986 2.7e-07 60.1 27 92.6
DCAR_024575 Daucus carota HOM05D008354 ORTHO05D010055 4.7e-07 59.3 42 66.7
Gohir.A09G101825 Gossypium hirsutum HOM05D008016 ORTHO05D004271 6.1e-07 58.9 32 81.2
Nitab4.5_0005831g0030 Nicotiana tabacum HOM05D001090 ORTHO05D006167 8.0e-07 58.5 30 86.7
RcHm_v2.0_Chr7g0221131 Rosa chinensis HOM05D008016 ORTHO05D004271 8.0e-07 58.5 38 71.1
CAN.G134.6 Capsicum annuum HOM05D008037 ORTHO05D004271 1.0e-06 58.2 30 83.3
Hund28446 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.4e-06 57.8 36 69.4
Hund28585 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.4e-06 57.8 36 69.4
Hund28944 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.4e-06 57.8 36 69.4
Hund28949 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.4e-06 57.8 36 69.4
Hund28959 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.4e-06 57.8 36 69.4
Hund29107 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.4e-06 57.8 36 69.4
Hund29184 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.4e-06 57.8 36 69.4
Hund29242 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.4e-06 57.8 36 69.4
Hund29271 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.4e-06 57.8 36 69.4
Hund29275 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.4e-06 57.8 36 69.4
Hund29279 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.4e-06 57.8 36 69.4
Hund29283 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.4e-06 57.8 36 69.4
Hund29451 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.4e-06 57.8 36 69.4
Hund29497 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.4e-06 57.8 36 69.4
Hund29785 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.4e-06 57.8 36 69.4
Hund29912 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.4e-06 57.8 36 69.4
Hund30004 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.4e-06 57.8 36 69.4
Hund30064 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.4e-06 57.8 36 69.4
Hund30203 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.4e-06 57.8 36 69.4
arahy.Tifrunner.gnm1.ann1.R58SNE Arachis hypogaea HOM05D008016 ORTHO05D010055 1.8e-06 57.4 52 55.8
Glyma.19G187300 Glycine max HOM05D007952 ORTHO05D004271 1.8e-06 57.4 85 44.7
Sc02g0004570 Simmondsia chinensis HOM05D008037 ORTHO05D004271 2.3e-06 57.0 48 62.5
Solyc11g044660.1 Solanum lycopersicum HOM05D008016 ORTHO05D010588 2.3e-06 57.0 35 82.9
EL10As18g24159 Beta vulgaris HOM05D008037 ORTHO05D004271 3.0e-06 56.6 60 56.7
COL.COLO4_33462 Corchorus olitorius HOM05D008016 ORTHO05D004271 3.9e-06 56.2 35 77.1
FAN26G0971 Fragaria x ananassa HOM05D008037 ORTHO05D004271 3.9e-06 56.2 32 78.1
Nitab4.5_0012234g0020 Nicotiana tabacum HOM05D008016 ORTHO05D010055 3.9e-06 56.2 63 52.4
arahy.Tifrunner.gnm1.ann1.61DFKT Arachis hypogaea HOM05D008037 ORTHO05D004271 6.7e-06 55.5 28 85.7
Nitab4.5_0001727g0120 Nicotiana tabacum HOM05D008016 ORTHO05D010055 6.7e-06 55.5 28 85.7
Nitab4.5_0004137g0070 Nicotiana tabacum HOM05D008037 ORTHO05D004271 6.7e-06 55.5 58 55.2
Nitab4.5_0001249g0070 Nicotiana tabacum HOM05D008016 ORTHO05D010588 8.8e-06 55.1 30 83.3


User provided reference genes

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