Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 0.0e+00 2416.0 1421 100.0
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 0.0e+00 2055.8 1421 88.5
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 0.0e+00 1689.1 1433 73.4
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 0.0e+00 1595.9 1420 71.5
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 0.0e+00 1565.4 1291 75.0
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 0.0e+00 1523.1 1418 65.2
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 0.0e+00 1481.5 934 83.8
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 0.0e+00 1270.8 770 85.7
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 3.2e-164 583.9 1217 38.0
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 8.5e-157 559.3 1473 36.4
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 3.0e-154 550.8 1478 38.1
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 2.2e-149 534.6 1476 37.4
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 5.5e-148 530.0 1197 35.1
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 1.1e-143 515.8 1119 36.0
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 8.0e-139 499.6 1219 35.4
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.0e-138 499.2 1128 34.5
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.1e-135 489.2 1500 35.0
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 9.1e-135 486.1 1234 34.6
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 5.0e-133 480.3 1253 32.7
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 4.4e-129 467.2 1224 32.5
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 5.7e-129 466.8 1208 33.9
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 1.7e-128 465.3 887 39.1
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 2.5e-124 451.4 252 91.7
Sopen07g020710 Solanum pennellii HOM05D005129 ORTHO05D005585 5.6e-124 450.3 553 67.1
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 5.2e-122 443.7 1289 30.8
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.5e-121 442.2 1211 31.8
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.4e-121 441.0 1108 33.0
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.7e-120 438.7 1103 33.2
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.7e-120 438.7 1220 32.2
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.7e-118 431.4 1103 32.9
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 1.0e-117 429.5 1086 32.4
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 2.3e-117 428.3 1104 34.1
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 5.0e-117 427.2 1208 31.0
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 1.1e-116 426.0 867 37.0
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 2.5e-116 424.9 1089 34.3
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 4.3e-116 424.1 1481 34.0
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 5.2e-114 417.2 1075 33.4
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 1.5e-113 415.6 1235 33.8
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 2.1e-110 405.2 1074 31.0
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 2.3e-109 401.7 1499 34.0
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.1e-106 391.3 1514 33.9
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 8.9e-106 389.8 1087 30.5
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 3.4e-105 387.9 863 35.1
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 7.5e-105 386.7 1453 36.8
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 1.9e-103 382.1 1031 32.0
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 1.3e-101 375.9 1490 30.1
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 3.0e-101 374.8 1488 30.9
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 1.5e-100 372.5 1038 31.7
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 7.3e-100 370.2 1050 30.6
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 9.5e-100 369.8 1162 30.4
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.8e-99 368.2 1006 32.3
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 2.8e-99 368.2 1022 30.5
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 8.1e-99 366.7 1518 29.3
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.4e-98 365.9 1010 32.2
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 5.2e-98 364.0 1043 31.2
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 2.0e-97 362.1 1315 33.8
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 2.6e-97 361.7 881 35.0
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.4e-97 361.3 1009 32.2
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.3e-96 359.4 1490 29.1
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 2.2e-96 358.6 1502 31.7
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 7.1e-95 353.6 1081 30.8
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 1.0e-93 349.7 1002 31.3
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 2.3e-93 348.6 853 33.3
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 3.0e-93 348.2 1093 31.7
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.1e-92 346.3 687 35.5
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 3.3e-92 344.7 1100 31.0
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 7.3e-92 343.6 1103 30.6
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 1.2e-89 336.3 1515 31.6
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 1.2e-89 336.3 1074 28.7
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 9.9e-89 333.2 1478 27.9
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 8.4e-88 330.1 1461 29.6
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 1.2e-86 326.2 1102 30.1
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.5e-84 319.3 1082 28.8
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 6.2e-83 313.9 838 31.1
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 4.9e-80 304.3 1058 28.5
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 4.6e-78 297.7 1085 30.0
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 1.6e-75 289.3 1235 25.8
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 3.7e-75 288.1 735 32.2
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 6.2e-75 287.3 1063 28.6
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 8.1e-75 287.0 1470 30.8
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 1.4e-74 286.2 1230 25.5
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 1.8e-74 285.8 1070 29.0
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 1.5e-73 282.7 1066 28.1
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 3.0e-69 268.5 857 29.8
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 6.7e-69 267.3 1053 27.8
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 6.7e-69 267.3 1594 26.5
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 4.3e-68 264.6 1449 24.8
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 2.1e-67 262.3 1223 26.2
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 2.1e-67 262.3 1059 27.6
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 1.1e-66 260.0 1056 27.6
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 1.8e-66 259.2 1479 25.2
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 5.3e-66 257.7 1056 27.5
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 5.8e-65 254.2 1036 26.5
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 9.3e-63 246.9 1054 26.5
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 2.1e-62 245.7 1059 26.6
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 2.1e-62 245.7 1435 26.1
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 6.9e-58 230.7 1038 27.5
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 3.4e-57 228.4 1467 26.3
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 1.0e-56 226.9 846 27.5
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 6.5e-56 224.2 1060 24.4
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 4.2e-55 221.5 1455 27.8
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 7.2e-55 220.7 738 30.5
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 2.7e-54 218.8 1060 25.2
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 1.0e-53 216.9 521 31.1
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 8.8e-53 213.8 771 27.0
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 1.1e-47 196.8 798 28.8
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 3.6e-46 191.8 732 26.5
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 2.0e-44 186.0 777 25.9
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.4e-42 179.9 397 32.7
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.8e-42 179.5 397 32.7
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.8e-42 179.5 397 32.7
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 2.0e-36 159.5 228 40.4
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 4.1e-34 151.8 894 34.6
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 7.7e-33 147.5 863 23.6
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 1.7e-32 146.4 1103 22.5
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 1.2e-30 140.2 1104 24.0
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 4.1e-26 125.2 291 32.0
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 2.0e-25 122.9 139 45.3
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 5.0e-24 118.2 1037 24.1
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 1.5e-23 116.7 288 31.2
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 1.9e-23 116.3 410 29.0
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 4.7e-22 111.7 316 30.1
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 6.1e-22 111.3 308 30.5
Dinv27169 Davidia involucrata HOM05D005129 ORTHO05D005585 4.0e-21 108.6 122 48.4
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 1.2e-20 107.1 340 27.4
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 6.3e-19 101.3 315 29.2
GSVIVG01035592001 Vitis vinifera HOM05D005129 ORTHO05D005585 1.8e-18 99.8 560 38.0
TAR633G2434 Trochodendron aralioides HOM05D005129 ORTHO05D005585 2.7e-17 95.9 512 22.5
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 5.9e-17 94.7 126 42.9
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 2.3e-16 92.8 149 34.9
Rhsim13G0123000 Rhododendron simsii HOM05D005129 ORTHO05D005585 4.2e-15 88.6 101 47.5
Atru.chr3.3028 Acer truncatum HOM05D005129 ORTHO05D005585 1.2e-14 87.0 122 43.4
Gohir.D05G113400 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.6e-14 86.7 126 42.1
PSO675G1291 Papaver somniferum HOM05D005129 ORTHO05D005585 1.6e-14 86.7 124 41.9
Aqoxy7G00168 Aquilegia oxysepala HOM05D019791 ORTHO05D021351 4.0e-13 82.0 262 31.7
PSO541G6300 Papaver somniferum HOM05D005129 ORTHO05D005585 6.8e-13 81.3 100 45.0
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 4.9e-11 75.1 112 34.8
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 4.5e-09 68.6 326 26.4
PSO541G4161 Papaver somniferum HOM05D026995 ORTHO05D005585 1.3e-08 67.0 100 40.0
TPR.G125 Trifolium pratense HOM05D005129 ORTHO05D005585 3.9e-08 65.5 88 43.2
PSO675G3866 Papaver somniferum HOM05D026995 ORTHO05D005585 3.3e-07 62.4 123 35.0
Carub.0004s1646 Capsella rubella HOM05D005129 ORTHO05D005585 1.2e-06 60.5 119 32.8
VMungo1080G1105 Vigna mungo HOM05D000424 ORTHO05D002854 1.2e-06 60.5 112 33.9


User provided reference genes

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