Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 1.9e-145 519.2 274 100.0
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 8.7e-143 510.4 274 97.8
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 1.0e-130 470.3 274 91.2
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 4.1e-100 368.6 296 69.3
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.5e-97 359.4 296 68.6
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.8e-96 355.9 296 67.6
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 1.5e-86 323.6 291 63.9
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.4e-84 317.0 298 61.4
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 7.0e-84 314.7 296 61.1
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 2.0e-78 296.6 297 59.3
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 2.0e-78 296.6 297 59.3
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 1.1e-76 290.8 297 58.2
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 1.4e-76 290.4 297 59.9
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 1.2e-70 270.8 299 53.5
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 3.0e-66 256.1 294 56.1
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 4.0e-63 245.7 310 50.3
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.5e-62 243.8 284 50.7
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.7e-61 240.4 296 49.3
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 3.8e-61 239.2 294 49.3
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 1.9e-60 236.9 294 49.0
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 7.8e-59 231.5 279 51.6
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 5.1e-58 228.8 284 50.4
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.5e-57 226.5 299 47.2
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 3.3e-57 226.1 308 48.1
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 5.6e-57 225.3 295 47.5
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 6.2e-56 221.9 296 47.3
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 6.2e-56 221.9 289 49.8
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 1.8e-55 220.3 296 48.3
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 2.4e-55 219.9 303 48.2
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 6.9e-55 218.4 298 47.3
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 3.4e-54 216.1 289 49.5
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 5.8e-54 215.3 270 49.6
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 2.9e-53 213.0 296 45.6
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 2.9e-53 213.0 297 46.8
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 4.9e-53 212.2 267 49.8
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.4e-52 210.7 313 45.7
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.4e-52 210.7 313 45.7
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 1.9e-52 210.3 279 48.4
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 2.4e-52 209.9 273 48.4
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 2.4e-52 209.9 284 48.2
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 1.2e-51 207.6 283 47.7
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 4.6e-51 205.7 291 45.4
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 4.6e-51 205.7 296 44.9
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 7.8e-51 204.9 299 45.2
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 7.8e-51 204.9 301 44.9
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 1.3e-50 204.1 295 45.1
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 1.3e-50 204.1 293 47.1
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 1.7e-50 203.8 281 46.3
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 2.3e-50 203.4 272 47.8
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 3.0e-50 203.0 297 44.4
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 3.0e-50 203.0 300 45.3
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 5.1e-50 202.2 281 44.8
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 8.7e-50 201.4 272 47.8
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 1.5e-49 200.7 299 43.8
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 1.5e-49 200.7 280 45.7
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 1.9e-49 200.3 295 44.7
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 4.3e-49 199.1 293 45.4
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 5.6e-49 198.7 278 44.2
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 4.8e-48 195.7 274 46.0
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 1.1e-47 194.5 285 42.5
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 2.4e-47 193.4 282 46.1
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 5.3e-47 192.2 257 47.1
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 2.6e-46 189.9 287 44.9
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 3.4e-46 189.5 283 44.5
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 4.5e-46 189.1 249 47.0
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 9.9e-46 188.0 287 43.2
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 1.7e-45 187.2 300 41.3
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 1.7e-45 187.2 285 44.2
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 2.9e-45 186.4 289 43.9
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 6.4e-45 185.3 299 41.1
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 6.4e-45 185.3 299 42.1
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 8.4e-45 184.9 298 42.3
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 1.4e-44 184.1 298 40.6
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.4e-44 183.3 274 43.8
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 3.2e-44 183.0 278 46.0
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 5.4e-44 182.2 300 43.0
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 7.1e-44 181.8 293 39.6
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 7.1e-44 181.8 263 45.2
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 9.3e-44 181.4 310 39.0
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 9.3e-44 181.4 297 41.4
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 1.2e-43 181.0 326 37.4
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.6e-43 180.6 300 42.7
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.6e-43 180.6 300 42.7
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 3.5e-43 179.5 299 42.8
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 4.6e-43 179.1 276 43.8
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 4.6e-43 179.1 300 42.7
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 6.0e-43 178.7 250 45.6
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 1.0e-42 177.9 286 40.9
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 1.3e-42 177.6 254 48.0
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 2.3e-42 176.8 310 39.7
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 3.0e-42 176.4 297 39.7
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 3.0e-42 176.4 288 43.1
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 3.0e-42 176.4 306 40.2
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 3.9e-42 176.0 118 76.3
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 5.1e-42 175.6 290 40.3
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 5.1e-42 175.6 290 40.3
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 1.1e-41 174.5 306 39.5
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 1.5e-41 174.1 303 40.3
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 1.9e-41 173.7 291 41.2
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 3.3e-41 172.9 302 40.1
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 7.4e-41 171.8 307 37.8
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 3.7e-40 169.5 280 40.7
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 4.8e-40 169.1 304 39.1
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 2.4e-39 166.8 306 38.9
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 3.1e-39 166.4 305 38.7
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 5.3e-39 165.6 305 38.4
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 6.9e-39 165.2 291 40.9
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 9.0e-39 164.9 283 36.0
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 1.2e-38 164.5 281 39.1
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 1.5e-38 164.1 293 39.9
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 1.5e-38 164.1 293 39.9
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 2.0e-38 163.7 244 41.8
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 1.7e-37 160.6 274 38.3
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 5.5e-36 155.6 274 37.6
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 7.1e-36 155.2 274 37.6
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 2.1e-35 153.7 284 40.8
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 2.7e-35 153.3 208 47.6
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 9.6e-33 144.8 294 36.4
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 1.3e-32 144.4 146 57.5
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.7e-29 134.0 243 39.5
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 2.2e-29 133.7 294 34.7
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 7.9e-27 125.2 170 48.2
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 3.4e-22 109.8 274 33.2
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 1.7e-16 90.9 162 37.7
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 6.3e-16 89.0 149 37.6
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 1.5e-09 67.8 264 26.9
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 2.8e-08 63.5 101 40.6


User provided reference genes

Program Settings