Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g005330 Solanum pennellii HOM05D006509 ORTHO05D008144 7.7e-169 597.0 299 100.0
Solyc02g021050.3 Solanum lycopersicum HOM05D006509 ORTHO05D008144 5.5e-167 590.9 299 98.7
PGSC0003DMG400019835 Solanum tuberosum HOM05D006509 ORTHO05D008144 1.0e-157 560.1 303 92.1
CAN.G157.10 Capsicum annuum HOM05D006509 ORTHO05D008144 3.1e-125 452.2 306 75.8
Nitab4.5_0002192g0100 Nicotiana tabacum HOM05D006509 ORTHO05D008144 1.3e-120 436.8 321 71.3
Peaxi162Scf00818g00020 Petunia axillaris HOM05D006509 ORTHO05D008144 1.5e-111 406.8 309 66.7
Cfa008714 Carpinus fangiana HOM05D006509 ORTHO05D008144 5.5e-90 335.1 243 67.5
Hma1.2p1_1005F.1_g246910 Hydrangea macrophylla HOM05D006509 ORTHO05D008144 9.4e-90 334.3 265 61.9
Manes.09G055500 Manihot esculenta HOM05D006509 ORTHO05D008144 2.7e-89 332.8 247 64.8
Duzib264G0706 Durio zibethinus HOM05D006509 ORTHO05D008144 3.6e-89 332.4 300 59.0
Thecc.01G136400 Theobroma cacao HOM05D006509 ORTHO05D008144 4.6e-89 332.0 282 60.6
TWI74G1084 Tripterygium wilfordii HOM05D006509 ORTHO05D008144 4.6e-89 332.0 266 60.5
Ciclev10032158m.g Citrus clementina HOM05D006509 ORTHO05D008144 7.9e-89 331.3 272 57.7
TAR629G0624 Trochodendron aralioides HOM05D006509 ORTHO05D008144 1.8e-88 330.1 273 58.6
Haze_11724 Corylus avellana HOM05D006509 ORTHO05D008144 6.7e-88 328.2 243 65.8
GSVIVG01010764001 Vitis vinifera HOM05D006509 ORTHO05D008144 8.8e-88 327.8 260 63.1
Atru.chr11.1320 Acer truncatum HOM05D006509 ORTHO05D008144 1.1e-87 327.4 239 63.2
Atru.chr11.1232 Acer truncatum HOM05D006509 ORTHO05D008144 1.5e-87 327.0 239 63.2
BcaC05g28409 Brassica carinata HOM05D006509 ORTHO05D008144 2.5e-87 326.2 295 56.9
CARHR095320 Cardamine hirsuta HOM05D006509 ORTHO05D008144 4.3e-87 325.5 305 55.1
SalBow2G3295 Salvia bowleyana HOM05D006509 ORTHO05D008144 4.3e-87 325.5 226 65.9
MSTRG.22733 Avicennia marina HOM05D006509 ORTHO05D008144 5.7e-87 325.1 243 64.6
C05p44930 Brassica napus HOM05D006509 ORTHO05D008144 7.4e-87 324.7 295 56.9
BolC5t33216H Brassica oleracea HOM05D006509 ORTHO05D008144 7.4e-87 324.7 295 56.9
QL03p043626 Quercus lobata HOM05D006509 ORTHO05D008144 9.7e-87 324.3 248 64.1
Carub.0003s1969 Capsella rubella HOM05D006509 ORTHO05D008144 1.3e-86 323.9 299 55.5
A05p29310 Brassica napus HOM05D006509 ORTHO05D008144 2.2e-86 323.2 247 64.0
EL10Ac9g22921 Beta vulgaris HOM05D006509 ORTHO05D008144 2.8e-86 322.8 273 57.1
Gorai.010G244900 Gossypium raimondii HOM05D006509 ORTHO05D008144 2.8e-86 322.8 244 66.8
BraA05t21822Z Brassica rapa HOM05D006509 ORTHO05D008144 3.7e-86 322.4 301 56.1
Eucgr.G02566 Eucalyptus grandis HOM05D006509 ORTHO05D008144 6.3e-86 321.6 238 64.3
Gohir.D13G187200 Gossypium hirsutum HOM05D006509 ORTHO05D008144 6.3e-86 321.6 244 66.8
DCAR_030403 Daucus carota HOM05D006509 ORTHO05D008144 8.2e-86 321.2 287 57.5
CANSAT56G2102 Cannabis sativa HOM05D006509 ORTHO05D008144 1.1e-85 320.9 263 61.2
Nn1g04452 Nelumbo nucifera HOM05D006509 ORTHO05D008144 1.1e-85 320.9 226 68.1
Sc06g0007860 Simmondsia chinensis HOM05D006509 ORTHO05D008144 1.1e-85 320.9 243 62.1
Sp3g17820 Schrenkiella parvula HOM05D006509 ORTHO05D008144 1.4e-85 320.5 252 61.5
PGR004G1007 Punica granatum HOM05D006509 ORTHO05D008144 2.4e-85 319.7 247 62.3
Migut.I00780 Erythranthe guttata HOM05D006509 ORTHO05D008144 3.1e-85 319.3 249 64.3
Thhalv10021111m.g Eutrema salsugineum HOM05D006509 ORTHO05D008144 3.1e-85 319.3 306 55.2
Hund08535 Selenicereus undatus HOM05D006509 ORTHO05D008144 3.1e-85 319.3 242 62.8
THA.LOC104800032 Tarenaya hassleriana HOM05D006509 ORTHO05D008144 9.1e-85 317.8 248 61.3
BcaB06g26050 Brassica carinata HOM05D006509 ORTHO05D008144 1.2e-84 317.4 296 56.4
CSS0015169 Camellia sinensis var. sinensis HOM05D006509 ORTHO05D008144 2.0e-84 316.6 261 59.8
AL3G33260 Arabidopsis lyrata HOM05D006509 ORTHO05D008144 4.5e-84 315.5 303 54.1
CiPaw.05G167100 Carya illinoinensis HOM05D006509 ORTHO05D008144 1.3e-83 313.9 240 63.3
Gohir.A13G179100 Gossypium hirsutum HOM05D006509 ORTHO05D008144 1.3e-83 313.9 227 68.7
Lsat_1_v5_gn_3_32880 Lactuca sativa HOM05D006509 ORTHO05D008144 1.3e-83 313.9 327 49.5
THA.LOC104814131 Tarenaya hassleriana HOM05D006509 ORTHO05D008144 1.7e-83 313.5 248 60.5
arahy.Tifrunner.gnm1.ann1.LJ2JSE Arachis hypogaea HOM05D006509 ORTHO05D008144 2.2e-83 313.2 276 56.2
arahy.Tifrunner.gnm1.ann1.4V51TJ Arachis hypogaea HOM05D006509 ORTHO05D008144 2.9e-83 312.8 278 55.4
arahy.Tifrunner.gnm1.ann1.6728UU Arachis hypogaea HOM05D006509 ORTHO05D008144 3.8e-83 312.4 276 56.2
Phvul.002G240600 Phaseolus vulgaris HOM05D006509 ORTHO05D008144 5.0e-83 312.0 253 60.9
AT3G19810 Arabidopsis thaliana HOM05D006509 ORTHO05D008144 6.5e-83 311.6 278 57.2
SGA_v2.0_scaffold5G02679 Striga asiatica HOM05D006509 ORTHO05D008144 8.5e-83 311.2 305 54.4
Lj4g0012507 Lotus japonicus HOM05D006509 ORTHO05D008144 1.1e-82 310.8 244 61.9
RcHm_v2.0_Chr1g0363071 Rosa chinensis HOM05D006509 ORTHO05D008144 1.1e-82 310.8 319 52.0
PSO017G6086 Papaver somniferum HOM05D006509 ORTHO05D008144 3.2e-82 309.3 270 55.9
arahy.Tifrunner.gnm1.ann1.IV5K9E Arachis hypogaea HOM05D006509 ORTHO05D008144 7.2e-82 308.1 278 54.7
VMungo0251G2215 Vigna mungo HOM05D006509 ORTHO05D008144 9.4e-82 307.8 271 57.6
Aa31LG8G6580 Aethionema arabicum HOM05D006509 ORTHO05D008144 1.2e-81 307.4 305 52.8
FvH4_7g19250 Fragaria vesca HOM05D006509 ORTHO05D008144 1.2e-81 307.4 250 60.8
FAN06G0528 Fragaria x ananassa HOM05D006509 ORTHO05D008144 1.2e-81 307.4 250 60.8
Gohir.A09G005300 Gossypium hirsutum HOM05D006509 ORTHO05D008144 1.6e-81 307.0 247 61.9
FAN03G0898 Fragaria x ananassa HOM05D006509 ORTHO05D008144 2.1e-81 306.6 250 60.8
FAN01G2825 Fragaria x ananassa HOM05D006509 ORTHO05D008144 2.7e-81 306.2 250 60.8
MD01G1107600 Malus domestica HOM05D006509 ORTHO05D008144 4.7e-81 305.4 226 65.0
Gohir.D09G004600 Gossypium hirsutum HOM05D006509 ORTHO05D008144 1.0e-80 304.3 247 61.5
PSO478G1783 Papaver somniferum HOM05D006509 ORTHO05D008144 1.8e-80 303.5 250 58.8
HanXRQChr06g0171951 Helianthus annuus HOM05D006509 ORTHO05D008144 3.0e-80 302.8 266 56.0
Lalb_Chr13g0295231 Lupinus albus HOM05D006509 ORTHO05D008144 5.1e-80 302.0 224 66.5
Gorai.006G006200 Gossypium raimondii HOM05D006509 ORTHO05D008144 6.7e-80 301.6 247 61.1
Prupe.2G212300 Prunus persica HOM05D006509 ORTHO05D008144 1.1e-79 300.8 249 59.8
vmacro14294 Vaccinium macrocarpon HOM05D006509 ORTHO05D008144 3.3e-79 299.3 273 55.7
vmacro23064 Vaccinium macrocarpon HOM05D006509 ORTHO05D008144 3.3e-79 299.3 273 55.7
Aqoxy4G00161 Aquilegia oxysepala HOM05D006509 ORTHO05D008144 4.4e-79 298.9 244 59.4
Glyma.05G160301 Glycine max HOM05D006509 ORTHO05D008144 4.4e-79 298.9 257 56.8
CDE07G1911 Ceratophyllum demersum HOM05D006509 ORTHO05D008144 9.7e-79 297.7 243 59.7
Medtr8g086630 Medicago truncatula HOM05D006509 ORTHO05D008144 1.3e-78 297.4 241 60.2
Sed0013319 Sechium edule HOM05D006509 ORTHO05D008144 1.3e-78 297.4 247 59.5
CDE04G0697 Ceratophyllum demersum HOM05D006509 ORTHO05D008144 2.2e-78 296.6 238 60.5
Sabra10G0129900 Salix brachista HOM05D006509 ORTHO05D008144 2.2e-78 296.6 254 57.1
Actinidia04136 Actinidia chinensis HOM05D006509 ORTHO05D008144 8.2e-78 294.7 244 58.2
Potri.010G170100 Populus trichocarpa HOM05D006509 ORTHO05D008144 1.1e-77 294.3 245 58.8
CsaV3_7G029430 Cucumis sativus L. HOM05D006509 ORTHO05D008144 1.4e-77 293.9 245 59.2
Ca_17903_v3 Cicer arietinum L. HOM05D006509 ORTHO05D008144 1.8e-77 293.5 239 59.0
ClCG09G005710 Citrullus lanatus HOM05D006509 ORTHO05D008144 2.4e-77 293.1 281 53.4
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.0e-76 290.0 216 64.8
MBI06_g12322_MAGBIO Magnolia biondii HOM05D006509 ORTHO05D008144 2.6e-76 289.7 211 65.4
TPR.G6737 Trifolium pratense HOM05D006509 ORTHO05D008144 4.5e-76 288.9 225 60.9
AUR62017665 Chenopodium quinoa HOM05D006509 ORTHO05D008144 7.7e-76 288.1 250 58.0
Migut.I00779 Erythranthe guttata HOM05D006509 ORTHO05D008144 8.5e-75 284.6 245 58.4
FAN10G2131 Fragaria x ananassa HOM05D006509 ORTHO05D008144 4.2e-74 282.3 233 60.1
Rhsim01G0196900 Rhododendron simsii HOM05D006509 ORTHO05D008144 8.0e-73 278.1 318 47.8
ATR0618G169 Amborella trichopoda HOM05D006509 ORTHO05D008144 1.5e-71 273.9 228 60.1
Lj6C721T21 Lonicera japonica HOM05D006509 ORTHO05D008144 1.7e-67 260.4 322 46.6
Psat7g069200 Pisum sativum HOM05D006509 ORTHO05D008144 1.1e-66 257.7 226 55.3
MELO3C015985.2 Cucumis melo HOM05D006509 ORTHO05D008144 7.5e-63 245.0 209 59.3
Os02g0831200 Oryza sativa ssp. japonica HOM05D006509 ORTHO05D008144 3.8e-59 232.6 233 50.6
Zm00001eb259480 Zea mays HOM05D006509 ORTHO05D008144 9.8e-55 218.0 223 52.0
SEGI_16170 Sequoiadendron giganteum HOM05D006509 ORTHO05D008144 1.3e-51 207.6 232 51.7
FAN10G3587 Fragaria x ananassa HOM05D006509 ORTHO05D007808 1.7e-51 207.2 165 60.6
AUR62015202 Chenopodium quinoa HOM05D006509 ORTHO05D008144 5.0e-51 205.7 158 63.3
SEGI_30002 Sequoiadendron giganteum HOM05D006509 ORTHO05D008144 1.5e-50 204.1 260 45.4
Medtr4g086490 Medicago truncatula HOM05D000001 ORTHO05D000003 1.2e-49 201.1 202 53.0
COL.COLO4_35800 Corchorus olitorius HOM05D006509 ORTHO05D008144 5.2e-48 195.7 144 69.4
unitig_747.g21717 Utricularia gibba HOM05D006509 ORTHO05D008144 1.2e-47 194.5 165 58.2
AUR62014968 Chenopodium quinoa HOM05D006509 ORTHO05D008144 1.1e-45 188.0 138 65.2
Cc03_g14920 Coffea canephora HOM05D006509 ORTHO05D008144 1.4e-45 187.6 138 60.9
Dinv39609 Davidia involucrata HOM05D006509 ORTHO05D008144 3.5e-44 183.0 136 61.8
Mapoly0002s0264 Marchantia polymorpha HOM05D006509 ORTHO05D008144 4.5e-44 182.6 229 42.4
Pp3c4_29820 Physcomitrium patens HOM05D006509 ORTHO05D008144 2.9e-43 179.9 241 39.4
CBR_g57847 Chara braunii HOM05D006509 ORTHO05D008144 8.6e-43 178.3 238 39.1
FAN10G0955 Fragaria x ananassa HOM05D006509 ORTHO05D008144 8.3e-38 161.8 147 59.9
Glyma.08G117902 Glycine max HOM05D006509 ORTHO05D008144 5.4e-37 159.1 131 56.5
Oeu049185.1 Olea europaea HOM05D006509 ORTHO05D008144 3.5e-36 156.4 110 69.1
Cpa.g.sc63.3 Carica papaya HOM05D006509 ORTHO05D008144 1.3e-35 154.5 121 65.3
ECA246G0117 Erigeron canadensis HOM05D006509 ORTHO05D008144 2.5e-34 150.2 109 66.1
AUR62018171 Chenopodium quinoa HOM05D006509 ORTHO05D008144 1.4e-32 144.4 112 61.6
Cc00_g35200 Coffea canephora HOM05D006509 ORTHO05D008144 9.8e-31 138.3 123 56.1
Os04g0108300 Oryza sativa ssp. japonica HOM05D006509 ORTHO05D008144 3.5e-28 129.8 140 43.6
AagrBONN_evm.TU.Sc2ySwM_362.2130 Anthoceros agrestis HOM05D006509 ORTHO05D008144 7.8e-20 102.1 162 38.3
FAN01G0805 Fragaria x ananassa HOM05D006509 ORTHO05D008144 2.1e-17 94.0 64 71.9
Oeu033605.1 Olea europaea HOM05D006509 ORTHO05D008144 3.8e-14 83.2 74 56.8
Ca_19971_v3 Cicer arietinum L. HOM05D000020 ORTHO05D000156 3.9e-11 73.2 75 50.7


User provided reference genes

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