Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g005300 Solanum pennellii HOM05D006938 ORTHO05D008600 6.8e-99 364.0 184 100.0
Solyc02g021000.3 Solanum lycopersicum HOM05D006938 ORTHO05D008600 3.4e-98 361.7 184 99.5
PGSC0003DMG400019837 Solanum tuberosum HOM05D006938 ORTHO05D008600 5.4e-88 327.8 193 89.6
Nitab4.5_0002392g0050 Nicotiana tabacum HOM05D006938 ORTHO05D008600 5.8e-74 281.2 212 74.5
Nitab4.5_0000139g0080 Nicotiana tabacum HOM05D006938 ORTHO05D008600 8.3e-73 277.3 212 73.6
CAN.G157.8 Capsicum annuum HOM05D006938 ORTHO05D008600 1.4e-67 260.0 210 71.9
Peaxi162Scf00363g00087 Petunia axillaris HOM05D006938 ORTHO05D008600 3.2e-64 248.8 210 68.6
Glyma.20G172300 Glycine max HOM05D006938 ORTHO05D008600 3.2e-48 195.7 141 73.0
arahy.Tifrunner.gnm1.ann1.ZPRB1V Arachis hypogaea HOM05D006938 ORTHO05D008600 2.1e-47 193.0 132 77.3
QL03p043666 Quercus lobata HOM05D006938 ORTHO05D008600 4.6e-47 191.8 192 57.8
Lj6P721T41 Lonicera japonica HOM05D006938 ORTHO05D008600 1.0e-46 190.7 136 73.5
Lj5g0002504 Lotus japonicus HOM05D006938 ORTHO05D008600 1.8e-46 189.9 142 70.4
PGR142G2203 Punica granatum HOM05D006938 ORTHO05D008600 2.3e-46 189.5 157 65.0
CiPaw.09G164200 Carya illinoinensis HOM05D006938 ORTHO05D008600 3.9e-46 188.7 143 69.9
ECA246G5327 Erigeron canadensis HOM05D006938 ORTHO05D008600 3.9e-46 188.7 126 75.4
Glyma.10G219400 Glycine max HOM05D006938 ORTHO05D008600 3.9e-46 188.7 141 70.9
Thecc.03G060300 Theobroma cacao HOM05D006938 ORTHO05D008600 3.9e-46 188.7 110 87.3
HanXRQChr17g0540771 Helianthus annuus HOM05D006938 ORTHO05D008600 5.1e-46 188.3 126 75.4
Dinv17599 Davidia involucrata HOM05D006938 ORTHO05D008600 1.1e-45 187.2 134 72.4
Potri.005G199000 Populus trichocarpa HOM05D006938 ORTHO05D008600 1.1e-45 187.2 166 60.8
Potri.002G062100 Populus trichocarpa HOM05D006938 ORTHO05D008600 1.5e-45 186.8 110 85.5
TWI53G1636 Tripterygium wilfordii HOM05D006938 ORTHO05D008600 2.5e-45 186.0 120 76.7
ClCG09G005720 Citrullus lanatus HOM05D006938 ORTHO05D008600 3.3e-45 185.7 106 87.7
Duzib084G0622 Durio zibethinus HOM05D006938 ORTHO05D008600 3.3e-45 185.7 110 86.4
Phvul.007G086000 Phaseolus vulgaris HOM05D006938 ORTHO05D008600 3.3e-45 185.7 141 70.2
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 4.3e-45 185.3 109 84.4
Gorai.007G003100 Gossypium raimondii HOM05D006938 ORTHO05D008600 4.3e-45 185.3 110 85.5
MELO3C015984.2 Cucumis melo HOM05D006938 ORTHO05D008600 5.6e-45 184.9 117 80.3
CsaV3_7G029440 Cucumis sativus L. HOM05D006938 ORTHO05D008600 5.6e-45 184.9 117 79.5
SGA_v2.0_scaffold467G52037 Striga asiatica HOM05D006938 ORTHO05D008600 5.6e-45 184.9 117 81.2
MD13G1007500 Malus domestica HOM05D006938 ORTHO05D008600 9.6e-45 184.1 127 74.0
Prupe.1G345500 Prunus persica HOM05D006938 ORTHO05D008600 9.6e-45 184.1 128 73.4
Atru.chr11.1233 Acer truncatum HOM05D006938 ORTHO05D008600 1.3e-44 183.7 130 71.5
Atru.chr11.1321 Acer truncatum HOM05D006938 ORTHO05D008600 1.3e-44 183.7 130 71.5
Actinidia11174 Actinidia chinensis HOM05D006938 ORTHO05D008600 1.3e-44 183.7 110 82.7
CSS0018133 Camellia sinensis var. sinensis HOM05D006938 ORTHO05D008600 1.3e-44 183.7 124 75.0
Gohir.A11G002500 Gossypium hirsutum HOM05D006938 ORTHO05D008600 1.3e-44 183.7 110 84.5
Gohir.D11G002100 Gossypium hirsutum HOM05D006938 ORTHO05D008600 1.3e-44 183.7 110 84.5
Hma1.2p1_0232F.1_g097690 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 1.3e-44 183.7 132 72.7
TAR629G2816 Trochodendron aralioides HOM05D006938 ORTHO05D008600 1.3e-44 183.7 109 84.4
Lalb_Chr03g0035761 Lupinus albus HOM05D006938 ORTHO05D008600 1.6e-44 183.3 134 71.6
Medtr1g097270 Medicago truncatula HOM05D006938 ORTHO05D008600 1.6e-44 183.3 139 68.3
Rhsim06G0126000 Rhododendron simsii HOM05D006938 ORTHO05D008600 1.6e-44 183.3 109 83.5
Sabra02G0050200 Salix brachista HOM05D006938 ORTHO05D008600 1.6e-44 183.3 110 83.6
Eucgr.G00991 Eucalyptus grandis HOM05D006938 ORTHO05D008600 2.1e-44 183.0 125 76.8
THA.LOC104805738 Tarenaya hassleriana HOM05D006938 ORTHO05D008600 2.1e-44 183.0 132 72.0
FvH4_4g36740 Fragaria vesca HOM05D006938 ORTHO05D008600 2.8e-44 182.6 150 62.7
FAN12G4276 Fragaria x ananassa HOM05D006938 ORTHO05D008600 2.8e-44 182.6 150 62.7
FAN17G2681 Fragaria x ananassa HOM05D006938 ORTHO05D008600 2.8e-44 182.6 150 62.7
vmacro22268 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 2.8e-44 182.6 109 83.5
vmacro22787 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 2.8e-44 182.6 109 83.5
Cc07_g19080 Coffea canephora HOM05D006938 ORTHO05D008600 3.7e-44 182.2 166 59.0
Oeu024662.1 Olea europaea HOM05D006938 ORTHO05D008600 4.8e-44 181.8 127 73.2
Ah.01g012920 Amaranthus hybridus HOM05D006938 ORTHO05D008600 6.2e-44 181.4 126 71.4
Cfa008713 Carpinus fangiana HOM05D006938 ORTHO05D008600 6.2e-44 181.4 140 68.6
Lsat_1_v5_gn_3_33800 Lactuca sativa HOM05D006938 ORTHO05D008600 6.2e-44 181.4 106 84.0
Psat6g189200 Pisum sativum HOM05D006938 ORTHO05D008600 6.2e-44 181.4 138 69.6
SGA_v2.0_scaffold25G10864 Striga asiatica HOM05D006938 ORTHO05D008600 8.1e-44 181.0 131 74.0
TPR.G23154 Trifolium pratense HOM05D006938 ORTHO05D008600 8.1e-44 181.0 141 67.4
RcHm_v2.0_Chr4g0446461 Rosa chinensis HOM05D006938 ORTHO05D008600 1.4e-43 180.3 132 69.7
Nn4g24932 Nelumbo nucifera HOM05D006938 ORTHO05D008600 1.8e-43 179.9 201 53.2
Hund24283 Selenicereus undatus HOM05D006938 ORTHO05D008600 2.4e-43 179.5 119 77.3
ATR0618G369 Amborella trichopoda HOM05D006938 ORTHO05D008600 3.1e-43 179.1 102 84.3
Aqoxy3G04277 Aquilegia oxysepala HOM05D006938 ORTHO05D008600 4.0e-43 178.7 131 70.2
Ca_10639_v3 Cicer arietinum L. HOM05D006938 ORTHO05D008600 4.0e-43 178.7 110 80.0
MD16G1000600 Malus domestica HOM05D006938 ORTHO05D008600 4.0e-43 178.7 111 78.4
Sed0026401 Sechium edule HOM05D006938 ORTHO05D008600 4.0e-43 178.7 117 76.1
GSVIVG01010180001 Vitis vinifera HOM05D006938 ORTHO05D008600 5.3e-43 178.3 103 85.4
AL7G45100 Arabidopsis lyrata HOM05D006938 ORTHO05D008600 1.2e-42 177.2 168 58.3
CANSAT64G2234 Cannabis sativa HOM05D006938 ORTHO05D008600 1.2e-42 177.2 110 80.9
Sp7g06080 Schrenkiella parvula HOM05D006938 ORTHO05D008600 1.2e-42 177.2 111 80.2
Cpa.g.sc51.44 Carica papaya HOM05D006938 ORTHO05D008600 2.0e-42 176.4 106 82.1
Ciclev10032755m.g Citrus clementina HOM05D006938 ORTHO05D008600 2.0e-42 176.4 131 67.9
AT5G36120 Arabidopsis thaliana HOM05D006938 ORTHO05D008600 2.6e-42 176.0 111 80.2
Hma1.2p1_0499F.1_g166850 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 2.6e-42 176.0 106 80.2
BcaC08g44319 Brassica carinata HOM05D006938 ORTHO05D008600 3.4e-42 175.6 111 79.3
A05p16420 Brassica napus HOM05D006938 ORTHO05D008600 3.4e-42 175.6 111 79.3
C06p17420 Brassica napus HOM05D006938 ORTHO05D008600 3.4e-42 175.6 111 79.3
BolC6t36937H Brassica oleracea HOM05D006938 ORTHO05D008600 3.4e-42 175.6 111 79.3
BraA05t20549Z Brassica rapa HOM05D006938 ORTHO05D008600 4.5e-42 175.3 118 75.4
Haze_11723 Corylus avellana HOM05D006938 ORTHO05D008600 4.5e-42 175.3 133 69.9
Manes.10G035800 Manihot esculenta HOM05D006938 ORTHO05D008600 4.5e-42 175.3 110 80.0
PSO478G3769 Papaver somniferum HOM05D006938 ORTHO05D008600 4.5e-42 175.3 110 80.0
BcaB02g08043 Brassica carinata HOM05D006938 ORTHO05D008600 5.8e-42 174.9 111 79.3
AUR62015206 Chenopodium quinoa HOM05D006938 ORTHO05D008600 2.2e-41 172.9 126 69.0
AUR62017669 Chenopodium quinoa HOM05D006938 ORTHO05D008600 2.2e-41 172.9 126 69.0
PSO017G4971 Papaver somniferum HOM05D006938 ORTHO05D008600 2.9e-41 172.6 110 79.1
Oeu022179.1 Olea europaea HOM05D006938 ORTHO05D008600 3.8e-41 172.2 103 86.4
Carub.0007s3179 Capsella rubella HOM05D006938 ORTHO05D008600 4.9e-41 171.8 104 81.7
Thhalv10005006m.g Eutrema salsugineum HOM05D006938 ORTHO05D008600 6.5e-41 171.4 109 78.9
MBI06_g36504_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 6.5e-41 171.4 106 80.2
Sc20g0002200 Simmondsia chinensis HOM05D006938 ORTHO05D008600 6.5e-41 171.4 108 78.7
Aa31LG9G17890 Aethionema arabicum HOM05D006938 ORTHO05D008600 8.4e-41 171.0 110 79.1
Migut.I00065 Erythranthe guttata HOM05D006938 ORTHO05D008600 8.4e-41 171.0 106 80.2
HPP92_002538 Vanilla planifolia HOM05D006938 ORTHO05D008600 1.1e-40 170.6 106 78.3
Manes.07G111600 Manihot esculenta HOM05D006938 ORTHO05D008600 1.4e-40 170.2 174 57.5
RcHm_v2.0_Chr3g0449681 Rosa chinensis HOM05D006938 ORTHO05D008600 1.9e-40 169.9 99 81.8
HPP92_002496 Vanilla planifolia HOM05D006938 ORTHO05D008600 4.2e-40 168.7 103 79.6
Sc10g0007070 Simmondsia chinensis HOM05D006938 ORTHO05D008600 3.9e-38 162.2 127 66.9
Zm00001eb362370 Zea mays HOM05D006938 ORTHO05D008600 2.5e-37 159.5 103 75.7
Os01g0966200 Oryza sativa ssp. japonica HOM05D006938 ORTHO05D008600 7.4e-37 157.9 103 75.7
Mapoly0101s0070 Marchantia polymorpha HOM05D006938 ORTHO05D008600 3.1e-35 152.5 111 69.4
Pp3c10_19880 Physcomitrium patens HOM05D006938 ORTHO05D008600 9.0e-35 151.0 100 72.0
SEGI_34816 Sequoiadendron giganteum HOM05D006938 ORTHO05D008600 5.8e-34 148.3 109 67.0
AagrBONN_evm.TU.Sc2ySwM_344.2773 Anthoceros agrestis HOM05D006938 ORTHO05D008600 1.3e-33 147.1 127 59.1
Peaxi162Scf00818g00021 Petunia axillaris HOM05D006938 ORTHO05D008600 2.2e-33 146.4 192 50.5
CDE07G1356 Ceratophyllum demersum HOM05D002851 ORTHO05D003084 7.2e-32 141.4 85 81.2
unitig_21.g20451 Utricularia gibba HOM05D006938 ORTHO05D008600 6.7e-30 134.8 69 92.8
MCO16G496 Micromonas commoda HOM05D006938 ORTHO05D008600 5.7e-29 131.7 100 62.0
MBI06_g34033_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 1.7e-25 120.2 83 72.3
Cre01.g052400 Chlamydomonas reinhardtii HOM05D006938 ORTHO05D008600 6.3e-20 101.7 93 50.5
CDE06G1837 Ceratophyllum demersum HOM05D006938 ORTHO05D008600 4.5e-18 95.5 54 83.3
CsaV3_4G025230 Cucumis sativus L. HOM05D006938 ORTHO05D008600 1.1e-16 90.9 59 79.7
PRCOL_00002779 Prasinoderma coloniale HOM05D006938 ORTHO05D008600 3.6e-15 85.9 74 54.1
EL10Ac9g22924 Beta vulgaris HOM05D006938 ORTHO05D008600 1.0e-14 84.3 44 86.4
Sc10g0007050 Simmondsia chinensis HOM05D006938 ORTHO05D008600 2.4e-11 73.2 107 44.9
Migut.I00066 Erythranthe guttata HOM05D006938 ORTHO05D008600 3.5e-10 69.3 44 70.5


User provided reference genes

Program Settings