Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g004090 Solanum pennellii HOM05D006333 ORTHO05D007799 5.3e-125 451.1 229 100.0
Solyc02g014720.4 Solanum lycopersicum HOM05D006333 ORTHO05D007799 5.6e-119 431.0 224 96.9
Nitab4.5_0008825g0020 Nicotiana tabacum HOM05D006333 ORTHO05D007799 2.0e-108 396.0 222 89.6
CAN.G1011.5 Capsicum annuum HOM05D006333 ORTHO05D007799 2.9e-107 392.1 221 88.7
Nitab4.5_0003092g0070 Nicotiana tabacum HOM05D006333 ORTHO05D007799 4.3e-103 378.3 212 89.6
Peaxi162Scf00334g00421 Petunia axillaris HOM05D006333 ORTHO05D007799 9.3e-98 360.5 200 91.5
Dinv17616 Davidia involucrata HOM05D006333 ORTHO05D007799 6.0e-97 357.8 241 76.3
Lj3A849G43 Lonicera japonica HOM05D006333 ORTHO05D007799 8.7e-96 354.0 222 78.8
Hma1.2p1_0044F.1_g026090 Hydrangea macrophylla HOM05D006333 ORTHO05D007799 2.5e-95 352.4 227 76.7
Ciclev10032700m.g Citrus clementina HOM05D006333 ORTHO05D007799 1.4e-93 346.7 218 78.4
CSS0049289 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 4.1e-93 345.1 222 77.5
Thecc.02G159600 Theobroma cacao HOM05D006333 ORTHO05D007799 4.1e-93 345.1 220 78.2
MSTRG.11948 Avicennia marina HOM05D006333 ORTHO05D007799 6.9e-93 344.4 219 77.6
Sed0022709 Sechium edule HOM05D006333 ORTHO05D007799 2.0e-92 342.8 220 78.6
HanXRQChr12g0366301 Helianthus annuus HOM05D006333 ORTHO05D007799 2.6e-92 342.4 222 77.5
Aa31LG7G2140 Aethionema arabicum HOM05D006333 ORTHO05D007799 7.7e-92 340.9 219 78.5
COL.COLO4_08588 Corchorus olitorius HOM05D006333 ORTHO05D007799 7.7e-92 340.9 220 76.8
Rhsim09G0071800 Rhododendron simsii HOM05D006333 ORTHO05D007799 7.7e-92 340.9 222 76.6
MELO3C024016.2 Cucumis melo HOM05D006333 ORTHO05D007799 6.5e-91 337.8 222 77.5
Migut.A00709 Erythranthe guttata HOM05D006333 ORTHO05D007799 8.5e-91 337.4 222 77.9
RcHm_v2.0_Chr4g0446761 Rosa chinensis HOM05D006333 ORTHO05D007799 1.1e-90 337.0 221 77.8
Aqoxy3G04253 Aquilegia oxysepala HOM05D006333 ORTHO05D007799 1.4e-90 336.7 222 75.7
Duzib132G1109 Durio zibethinus HOM05D006333 ORTHO05D007799 1.4e-90 336.7 218 76.1
ECA233G4371 Erigeron canadensis HOM05D006333 ORTHO05D007799 1.4e-90 336.7 227 75.8
CANSAT56G2519 Cannabis sativa HOM05D006333 ORTHO05D007799 3.2e-90 335.5 220 76.4
FvH4_4g36970 Fragaria vesca HOM05D006333 ORTHO05D007799 3.2e-90 335.5 221 76.5
GSVIVG01012055001 Vitis vinifera HOM05D006333 ORTHO05D007799 3.2e-90 335.5 207 81.6
Gohir.D13G061500 Gossypium hirsutum HOM05D006333 ORTHO05D007799 5.5e-90 334.7 220 75.0
Gohir.A13G060400 Gossypium hirsutum HOM05D006333 ORTHO05D007799 7.2e-90 334.3 220 74.5
Hund24376 Selenicereus undatus HOM05D006333 ORTHO05D007799 7.2e-90 334.3 222 74.3
TWI53G1586 Tripterygium wilfordii HOM05D006333 ORTHO05D007799 7.2e-90 334.3 222 76.1
CsaV3_3G031750 Cucumis sativus L. HOM05D006333 ORTHO05D007799 1.6e-89 333.2 222 77.0
Psat7g233400 Pisum sativum HOM05D006333 ORTHO05D007799 2.1e-89 332.8 219 76.7
FAN07G1904 Fragaria x ananassa HOM05D006333 ORTHO05D007799 2.7e-89 332.4 221 75.6
Lj3g0001632 Lotus japonicus HOM05D006333 ORTHO05D007799 3.6e-89 332.0 226 74.3
Gorai.013G070000 Gossypium raimondii HOM05D006333 ORTHO05D007799 1.4e-88 330.1 226 73.0
Medtr4g023480 Medicago truncatula HOM05D006333 ORTHO05D007799 2.3e-88 329.3 226 74.3
Prupe.1G347700 Prunus persica HOM05D006333 ORTHO05D007799 2.3e-88 329.3 224 75.4
Eucgr.J00869 Eucalyptus grandis HOM05D006333 ORTHO05D007799 3.0e-88 328.9 226 73.9
Nn5g28807 Nelumbo nucifera HOM05D006333 ORTHO05D007799 3.9e-88 328.6 219 74.0
Phvul.011G028900 Phaseolus vulgaris HOM05D006333 ORTHO05D007799 3.9e-88 328.6 220 75.0
Lsat_1_v5_gn_8_33120 Lactuca sativa HOM05D006333 ORTHO05D007799 5.1e-88 328.2 226 75.2
EL10Ac9g22952 Beta vulgaris HOM05D006333 ORTHO05D007799 1.5e-87 326.6 222 73.0
Thhalv10008690m.g Eutrema salsugineum HOM05D006333 ORTHO05D007799 1.5e-87 326.6 222 74.3
CiPaw.05G169800 Carya illinoinensis HOM05D006333 ORTHO05D007799 3.3e-87 325.5 220 73.6
Glyma.12G026000 Glycine max HOM05D006333 ORTHO05D007799 5.7e-87 324.7 214 75.7
PSO782G2700 Papaver somniferum HOM05D006333 ORTHO05D007799 7.4e-87 324.3 219 74.4
CARHR017920 Cardamine hirsuta HOM05D006333 ORTHO05D007799 9.7e-87 323.9 218 75.7
AT1G17330 Arabidopsis thaliana HOM05D006333 ORTHO05D007799 1.3e-86 323.6 215 75.3
Ca_19901_v3 Cicer arietinum L. HOM05D006333 ORTHO05D007799 1.3e-86 323.6 219 74.9
Manes.04G057700 Manihot esculenta HOM05D006333 ORTHO05D007799 2.2e-86 322.8 222 71.6
Potri.007G072000 Populus trichocarpa HOM05D006333 ORTHO05D007799 2.2e-86 322.8 218 76.6
THA.LOC104808350 Tarenaya hassleriana HOM05D006333 ORTHO05D007799 4.8e-86 321.6 221 72.4
AL1G29580 Arabidopsis lyrata HOM05D006333 ORTHO05D007799 6.3e-86 321.2 215 74.9
MBI06_g42293_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 8.2e-86 320.9 222 73.4
Atru.chr11.1164 Acer truncatum HOM05D006333 ORTHO05D007799 1.1e-85 320.5 220 71.8
Prupe.1G347900 Prunus persica HOM05D006333 ORTHO05D007799 1.4e-85 320.1 224 73.2
VMungo1127G0165 Vigna mungo HOM05D006333 ORTHO05D007799 1.4e-85 320.1 219 74.0
FAN17G3063 Fragaria x ananassa HOM05D006333 ORTHO05D007799 5.3e-85 318.2 245 68.2
PGR044G2499 Punica granatum HOM05D006333 ORTHO05D007799 6.9e-85 317.8 217 71.9
Sc17g0000100 Simmondsia chinensis HOM05D006333 ORTHO05D007799 6.9e-85 317.8 222 70.7
BcaC05g25649 Brassica carinata HOM05D006333 ORTHO05D007799 7.7e-84 314.3 217 73.3
BolC5t30276H Brassica oleracea HOM05D006333 ORTHO05D007799 7.7e-84 314.3 217 73.3
MD13G1004800 Malus domestica HOM05D006333 ORTHO05D007799 7.7e-84 314.3 214 74.8
Sp1g15450 Schrenkiella parvula HOM05D006333 ORTHO05D007799 1.0e-83 313.9 217 73.7
C05p15710 Brassica napus HOM05D006333 ORTHO05D007799 2.2e-83 312.8 217 72.8
Cc11_g02420 Coffea canephora HOM05D006333 ORTHO05D007799 5.0e-83 311.6 222 73.4
unitig_32.g11605 Utricularia gibba HOM05D006333 ORTHO05D007799 1.1e-82 310.5 222 68.9
Cfa008751 Carpinus fangiana HOM05D006333 ORTHO05D007799 7.2e-82 307.8 222 70.7
Carub.0001s1708 Capsella rubella HOM05D006333 ORTHO05D007799 9.4e-82 307.4 219 71.7
A06p13260 Brassica napus HOM05D006333 ORTHO05D007799 4.7e-81 305.1 217 71.4
CSS0015547 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 4.7e-81 305.1 222 72.1
BraA06t24479Z Brassica rapa HOM05D006333 ORTHO05D007799 1.4e-80 303.5 217 71.0
FAN12G1853 Fragaria x ananassa HOM05D006333 ORTHO05D007799 8.8e-80 300.8 222 70.7
BcaB07g34033 Brassica carinata HOM05D006333 ORTHO05D007799 4.4e-79 298.5 220 70.0
ATR0618G379 Amborella trichopoda HOM05D006333 ORTHO05D007799 5.7e-79 298.1 221 68.3
Atru.chr11.2675 Acer truncatum HOM05D006333 ORTHO05D007799 1.7e-78 296.6 215 69.3
SGA_v2.0_scaffold146G36264 Striga asiatica HOM05D006333 ORTHO05D007799 2.2e-78 296.2 262 62.6
TPR.G9857 Trifolium pratense HOM05D006333 ORTHO05D007799 8.2e-78 294.3 193 75.1
Atru.chr11.2676 Acer truncatum HOM05D006333 ORTHO05D007799 1.1e-77 293.9 215 68.8
Os10g0486000 Oryza sativa ssp. japonica HOM05D006333 ORTHO05D007799 2.4e-77 292.7 220 68.2
ClCG10G012010 Citrullus lanatus HOM05D006333 ORTHO05D007799 4.5e-76 288.5 205 74.6
AUR62017701 Chenopodium quinoa HOM05D006333 ORTHO05D007799 2.2e-75 286.2 219 66.7
Lalb_Chr01g0001411 Lupinus albus HOM05D006333 ORTHO05D007799 2.9e-75 285.8 217 67.3
PSO063G3232 Papaver somniferum HOM05D006333 ORTHO05D007799 6.5e-75 284.6 246 62.6
Sabra07G0060700 Salix brachista HOM05D006333 ORTHO05D007799 1.1e-74 283.9 259 61.4
Eucgr.J00870 Eucalyptus grandis HOM05D006333 ORTHO05D007799 2.5e-74 282.7 211 70.1
DCAR_008496 Daucus carota HOM05D003141 ORTHO05D003633 1.6e-73 280.0 193 74.6
AUR62032988 Chenopodium quinoa HOM05D006333 ORTHO05D007799 5.2e-72 275.0 207 69.1
arahy.Tifrunner.gnm1.ann1.A0JP3J Arachis hypogaea HOM05D006333 ORTHO05D007799 7.4e-71 271.2 226 63.7
HPP92_008575 Vanilla planifolia HOM05D006333 ORTHO05D007799 7.4e-71 271.2 220 64.1
Actinidia11766 Actinidia chinensis HOM05D006333 ORTHO05D007799 1.3e-70 270.4 223 65.9
Ah.01g001500 Amaranthus hybridus HOM05D006333 ORTHO05D007799 2.8e-70 269.2 178 73.0
arahy.Tifrunner.gnm1.ann1.N7V6FU Arachis hypogaea HOM05D006333 ORTHO05D007799 3.7e-70 268.9 242 62.4
SalBow7G0482 Salvia bowleyana HOM05D006333 ORTHO05D007799 1.0e-64 250.8 275 55.3
CDE02G3779 Ceratophyllum demersum HOM05D006333 ORTHO05D007799 2.7e-60 236.1 208 62.5
Cpa.g.sc0.135 Carica papaya HOM05D006333 ORTHO05D007799 5.9e-60 235.0 154 76.6
Pp3c7_23360 Physcomitrium patens HOM05D006333 ORTHO05D007799 1.3e-59 233.8 221 56.6
SGA_v2.0_scaffold173G39125 Striga asiatica HOM05D006333 ORTHO05D007799 1.1e-58 230.7 160 70.6
TAR629G0175 Trochodendron aralioides HOM05D006333 ORTHO05D007799 5.5e-58 228.4 153 74.5
SMO116G0442 Selaginella moellendorffii HOM05D006333 ORTHO05D007799 1.2e-57 227.3 217 58.1
Cre05.g234647 Chlamydomonas reinhardtii HOM05D006333 ORTHO05D007799 1.5e-55 220.3 228 54.8
Haze_11767 Corylus avellana HOM05D006333 ORTHO05D007799 1.3e-51 207.2 193 60.1
Zm00001eb045350 Zea mays HOM05D006333 ORTHO05D007799 1.6e-49 200.3 143 68.5
vmacro16037 Vaccinium macrocarpon HOM05D006333 ORTHO05D007799 8.0e-49 198.0 163 65.0
MCO07G572 Micromonas commoda HOM05D006333 ORTHO05D007799 8.9e-48 194.5 222 51.4
Actinidia13050 Actinidia chinensis HOM05D006333 ORTHO05D007799 6.3e-46 188.3 202 55.9
PRCOL_00000482 Prasinoderma coloniale HOM05D006333 ORTHO05D007799 1.8e-40 170.2 221 44.3
Mapoly0006s0058 Marchantia polymorpha HOM05D006333 ORTHO05D007799 3.7e-38 162.5 150 56.0
SalBow1G5083 Salvia bowleyana HOM05D006333 ORTHO05D007799 6.6e-35 151.8 110 70.0
QL03p044200 Quercus lobata HOM05D006333 ORTHO05D007799 2.5e-34 149.8 85 83.5
CBR_g5629 Chara braunii HOM05D006333 ORTHO05D007799 5.6e-34 148.7 385 32.2
Ah.05g173900 Amaranthus hybridus HOM05D006333 ORTHO05D007799 3.9e-27 125.9 84 69.0
Thecc.08G107200 Theobroma cacao HOM05D006333 ORTHO05D007799 1.4e-21 107.5 70 72.9
Aa31sc968G10 Aethionema arabicum HOM05D006333 ORTHO05D007799 4.6e-20 102.4 136 47.1
Haze_06289 Corylus avellana HOM05D006333 ORTHO05D007799 1.1e-18 97.8 51 90.2
Oeu044913.1 Olea europaea HOM05D006333 ORTHO05D007799 5.6e-18 95.5 64 78.1
SalBow1G0042 Salvia bowleyana HOM05D006333 ORTHO05D007799 3.6e-17 92.8 65 73.8
QL03p044193 Quercus lobata HOM05D006333 ORTHO05D007799 1.1e-16 91.3 67 65.7
Haze_18642 Corylus avellana HOM05D006333 ORTHO05D007799 3.1e-16 89.7 70 67.1
Cpa.g.sc0.136 Carica papaya HOM05D006333 ORTHO05D007799 2.0e-15 87.0 62 72.6
Cfa024705 Carpinus fangiana HOM05D006333 ORTHO05D007799 4.2e-13 79.3 191 31.4
Cfa023716 Carpinus fangiana HOM05D006333 ORTHO05D007799 7.8e-12 75.1 294 25.9
MBI06_g42292_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 1.9e-10 70.5 53 66.0
TAR629G1621 Trochodendron aralioides HOM05D006333 ORTHO05D007799 1.8e-08 63.9 52 61.5
Aa31LG4G11880 Aethionema arabicum HOM05D006333 ORTHO05D007799 9.9e-07 58.2 52 59.6
Aa31sc286G50 Aethionema arabicum HOM05D006333 ORTHO05D007799 6.4e-06 55.5 37 73.0


User provided reference genes

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