Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 4.7e-280 967.2 495 100.0
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 8.6e-274 946.4 495 97.4
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 4.8e-224 781.2 496 85.3
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 8.7e-218 760.4 518 76.4
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 3.3e-217 758.4 490 79.6
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 3.4e-206 721.8 495 75.4
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 5.5e-196 688.0 495 73.5
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 5.7e-193 677.9 496 77.0
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 5.4e-167 591.7 500 59.4
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 3.9e-165 585.5 495 61.0
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 8.9e-162 574.3 356 81.5
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 3.7e-160 568.9 489 59.1
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 6.4e-160 568.2 496 58.1
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 1.2e-155 553.9 492 58.1
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 2.3e-154 549.7 496 56.7
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 6.8e-154 548.1 490 56.7
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 1.5e-153 547.0 488 56.6
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 8.3e-152 541.2 490 56.5
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 2.7e-150 536.2 437 62.7
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 4.6e-150 535.4 500 55.6
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 4.6e-150 535.4 495 57.4
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 6.0e-150 535.0 492 56.5
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 6.0e-150 535.0 491 55.4
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 7.8e-150 534.6 490 56.1
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 1.3e-149 533.9 507 57.6
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 3.0e-149 532.7 499 55.5
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 1.1e-148 530.8 524 55.3
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 1.9e-148 530.0 506 55.9
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 3.3e-148 529.3 495 56.4
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 4.7e-147 525.4 498 55.2
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 4.7e-147 525.4 494 56.5
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 6.2e-147 525.0 506 54.9
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 8.1e-147 524.6 497 55.1
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 1.8e-146 523.5 506 55.3
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 2.4e-146 523.1 498 53.0
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 4.0e-146 522.3 501 54.9
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 5.8e-145 518.5 501 55.7
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 1.1e-143 514.2 495 54.5
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 1.9e-143 513.5 453 59.2
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 4.1e-143 512.3 494 54.7
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 7.1e-143 511.5 501 55.5
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 7.1e-143 511.5 496 52.6
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 9.2e-143 511.1 495 54.1
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 3.5e-142 509.2 495 54.5
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 7.8e-142 508.1 499 55.1
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 7.8e-142 508.1 500 56.2
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 2.3e-141 506.5 503 54.9
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 3.9e-141 505.8 497 54.9
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 1.5e-140 503.8 509 54.6
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 2.5e-140 503.1 445 58.0
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 7.3e-140 501.5 467 57.6
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 7.3e-140 501.5 475 53.1
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 1.2e-139 500.7 499 53.3
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 1.2e-139 500.7 496 53.8
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 1.2e-139 500.7 496 53.2
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 1.1e-138 497.7 484 56.2
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 5.2e-138 495.4 490 54.3
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 6.9e-138 495.0 507 53.3
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 9.0e-138 494.6 392 64.3
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 1.5e-137 493.8 496 54.4
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 3.4e-137 492.7 506 55.1
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 1.7e-136 490.3 506 53.4
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 1.2e-134 484.2 493 52.5
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 2.3e-133 479.9 486 52.9
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 3.0e-133 479.6 469 54.4
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 5.1e-133 478.8 404 58.7
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 2.5e-132 476.5 491 53.0
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 3.3e-132 476.1 503 51.3
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 2.6e-129 466.5 466 53.0
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 4.9e-128 462.2 522 49.0
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 1.1e-127 461.1 490 50.8
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 1.9e-127 460.3 507 48.7
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 1.2e-126 457.6 574 46.7
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 2.3e-125 453.4 495 50.1
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 3.9e-125 452.6 493 52.3
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 5.1e-125 452.2 497 49.1
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 5.6e-124 448.7 425 56.0
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 5.6e-124 448.7 493 48.1
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 5.6e-124 448.7 493 49.7
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 7.4e-124 448.4 495 50.9
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 2.1e-123 446.8 493 48.9
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 2.4e-122 443.4 496 48.0
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 3.1e-122 443.0 492 49.2
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 2.6e-121 439.9 495 48.3
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 9.9e-121 438.0 423 54.4
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 3.8e-120 436.0 362 61.6
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 5.5e-119 432.2 500 47.8
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 5.5e-119 432.2 500 47.8
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 6.0e-118 428.7 495 48.1
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 7.9e-118 428.3 495 48.1
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 1.9e-116 423.7 496 48.0
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 5.6e-116 422.2 488 47.7
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 1.6e-115 420.6 491 48.5
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 1.4e-114 417.5 354 57.1
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 3.4e-113 412.9 554 46.6
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 8.4e-112 408.3 505 46.5
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 2.5e-111 406.8 505 46.3
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 8.7e-109 398.3 495 46.9
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 7.4e-108 395.2 392 52.8
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 6.7e-101 372.1 394 50.8
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 5.3e-98 362.5 406 49.0
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 1.2e-97 361.3 346 55.5
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 3.4e-97 359.8 488 44.1
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 9.7e-92 341.7 494 41.3
Potri.002G108700 Populus trichocarpa HOM05D005719 ORTHO05D007030 8.0e-86 322.0 251 64.5
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 1.4e-69 268.1 454 37.7
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 2.8e-67 260.4 500 33.8
Os10g0188900 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 3.1e-66 256.9 271 50.2
TAR381G1016 Trochodendron aralioides HOM05D005719 ORTHO05D007030 2.3e-64 250.8 184 64.7
Lju279A4T8 Lonicera japonica HOM05D005719 ORTHO05D007030 1.6e-57 228.0 170 65.3
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 2.9e-56 223.8 352 41.8
AUR62035705 Chenopodium quinoa HOM05D005719 ORTHO05D007030 3.6e-54 216.9 282 45.0
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 1.8e-53 214.5 431 33.6
TAR381G0292 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.5e-52 211.5 237 51.1
Zm00001eb198670 Zea mays HOM05D005719 ORTHO05D007030 2.2e-51 207.6 276 42.0
AUR62035707 Chenopodium quinoa HOM05D005719 ORTHO05D007030 4.4e-44 183.3 133 66.2
Peaxi162Scf01397g00010 Petunia axillaris HOM05D005719 ORTHO05D007030 9.8e-44 182.2 140 72.9
Duzib116G0315 Durio zibethinus HOM05D005719 ORTHO05D007030 7.8e-41 172.6 135 60.7
Lju170A15T23 Lonicera japonica HOM05D005719 ORTHO05D007030 1.1e-37 162.2 108 68.5
BcaB04g19478 Brassica carinata HOM05D005719 ORTHO05D007030 8.3e-35 152.5 286 37.4
ATR0144G003 Amborella trichopoda HOM05D005719 ORTHO05D007030 2.1e-33 147.9 234 40.2
CBR_g38241 Chara braunii HOM05D005719 ORTHO05D007030 3.5e-33 147.1 383 29.2
Oeu035375.1 Olea europaea HOM05D005719 ORTHO05D007030 1.7e-32 144.8 173 48.0
ATR0800G070 Amborella trichopoda HOM05D005719 ORTHO05D007030 8.6e-32 142.5 131 55.0
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 8.6e-32 142.5 275 34.2
Hund16029 Selenicereus undatus HOM05D005719 ORTHO05D007030 1.4e-29 135.2 255 34.9
SEGI_36882 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 4.0e-29 133.7 137 51.1
COL.COLO4_23153 Corchorus olitorius HOM05D005719 ORTHO05D007030 3.5e-25 120.6 164 43.3
Lju170A15T24 Lonicera japonica HOM05D005719 ORTHO05D007030 3.5e-25 120.6 109 59.6
SEGI_23985 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 2.1e-14 84.7 126 36.5
Lju279C4T1 Lonicera japonica HOM05D005719 ORTHO05D007030 6.9e-13 79.7 109 45.9
Cre12.g551000 Chlamydomonas reinhardtii HOM05D005719 ORTHO05D007030 1.4e-10 72.0 435 22.1
C05p32060 Brassica napus HOM05D005719 ORTHO05D007030 7.9e-09 66.2 86 43.0
BolC5t31933H Brassica oleracea HOM05D005719 ORTHO05D007030 7.9e-09 66.2 86 43.0


User provided reference genes

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