Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g001570 Solanum pennellii HOM05D006111 ORTHO05D007683 1.3e-210 736.1 366 100.0
Solyc02g005200.4 Solanum lycopersicum HOM05D006111 ORTHO05D007683 1.4e-209 732.6 366 99.2
PGSC0003DMG400006635 Solanum tuberosum HOM05D006111 ORTHO05D007683 1.3e-189 666.4 364 93.4
CAN.G666.14 Capsicum annuum HOM05D006111 ORTHO05D007683 3.7e-181 638.3 364 88.2
Nitab4.5_0001001g0030 Nicotiana tabacum HOM05D006111 ORTHO05D007683 3.4e-174 615.1 361 86.1
Peaxi162Scf00818g00127 Petunia axillaris HOM05D006111 ORTHO05D007683 4.3e-169 598.2 382 79.3
Eucgr.J01211 Eucalyptus grandis HOM05D006111 ORTHO05D007683 5.6e-161 571.2 371 76.3
Dinv43431 Davidia involucrata HOM05D006111 ORTHO05D007683 3.6e-160 568.5 369 76.4
MD02G1308600 Malus domestica HOM05D006111 ORTHO05D007683 6.8e-159 564.3 370 75.9
Prupe.2G015400 Prunus persica HOM05D006111 ORTHO05D007683 1.2e-158 563.5 370 75.7
MD07G1013000 Malus domestica HOM05D006111 ORTHO05D007683 2.0e-158 562.8 369 75.9
Nitab4.5_0000139g0200 Nicotiana tabacum HOM05D006111 ORTHO05D007683 2.6e-158 562.4 363 80.4
QL04p008312 Quercus lobata HOM05D006111 ORTHO05D007683 5.8e-158 561.2 370 75.7
CSS0012829 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 8.3e-157 557.4 362 76.2
CSS0034733 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 8.3e-157 557.4 362 76.2
RcHm_v2.0_Chr1g0316521 Rosa chinensis HOM05D006111 ORTHO05D007683 1.9e-156 556.2 364 76.4
FvH4_7g01190 Fragaria vesca HOM05D006111 ORTHO05D007683 4.1e-156 555.1 358 75.7
FAN06G2641 Fragaria x ananassa HOM05D006111 ORTHO05D007683 4.1e-156 555.1 358 75.7
SalBow6G4116 Salvia bowleyana HOM05D006111 ORTHO05D007683 4.1e-156 555.1 310 83.9
Migut.N01606 Erythranthe guttata HOM05D006111 ORTHO05D007683 9.2e-156 553.9 334 79.3
Gorai.004G171600 Gossypium raimondii HOM05D006111 ORTHO05D007683 9.2e-156 553.9 364 73.9
SalBow6G6970 Salvia bowleyana HOM05D006111 ORTHO05D007683 1.2e-155 553.5 310 83.5
PGR044G0412 Punica granatum HOM05D006111 ORTHO05D007683 1.6e-155 553.1 375 73.9
Aqoxy1G00288 Aquilegia oxysepala HOM05D006111 ORTHO05D007683 2.7e-155 552.4 372 75.0
Duzib268G0420 Durio zibethinus HOM05D006111 ORTHO05D007683 3.5e-155 552.0 364 74.2
Gohir.D08G164600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 4.6e-155 551.6 364 73.6
MSTRG.17026 Avicennia marina HOM05D006111 ORTHO05D007683 6.0e-155 551.2 354 75.4
FAN03G2464 Fragaria x ananassa HOM05D006111 ORTHO05D007683 6.0e-155 551.2 360 75.6
EL10Ac2g04342 Beta vulgaris HOM05D006111 ORTHO05D007683 1.0e-154 550.4 367 73.6
Oeu014586.1 Olea europaea HOM05D006111 ORTHO05D007683 1.0e-154 550.4 342 79.5
Potri.009G059600 Populus trichocarpa HOM05D006111 ORTHO05D007683 1.0e-154 550.4 323 79.9
Manes.10G140800 Manihot esculenta HOM05D006111 ORTHO05D007683 1.3e-154 550.1 329 79.9
FAN10G2658 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.7e-154 549.7 360 75.3
FAN01G0043 Fragaria x ananassa HOM05D006111 ORTHO05D007683 3.9e-154 548.5 362 74.9
Potri.009G059800 Populus trichocarpa HOM05D006111 ORTHO05D007683 3.9e-154 548.5 381 72.7
Nn7g36241 Nelumbo nucifera HOM05D006111 ORTHO05D007683 8.6e-154 547.4 369 75.3
CiPaw.13G006200 Carya illinoinensis HOM05D006111 ORTHO05D007683 1.1e-153 547.0 376 72.9
CANSAT80G0546 Cannabis sativa HOM05D006111 ORTHO05D007683 2.5e-153 545.8 303 84.2
Atru.chr11.2607 Acer truncatum HOM05D006111 ORTHO05D007683 3.3e-153 545.4 328 80.5
Sc10g0000130 Simmondsia chinensis HOM05D006111 ORTHO05D007683 7.3e-153 544.3 367 74.1
Cc01_g06700 Coffea canephora HOM05D006111 ORTHO05D007683 9.5e-153 543.9 370 73.0
Thecc.01G409400 Theobroma cacao HOM05D006111 ORTHO05D007683 9.5e-153 543.9 368 72.8
MBI02_g05669_MAGBIO Magnolia biondii HOM05D006111 ORTHO05D007683 1.2e-152 543.5 330 79.1
TAR623G0061 Trochodendron aralioides HOM05D006111 ORTHO05D007683 2.8e-152 542.3 367 73.8
DCAR_015173 Daucus carota HOM05D006111 ORTHO05D007683 4.7e-152 541.6 365 73.4
CsaV3_7G030960 Cucumis sativus L. HOM05D006111 ORTHO05D007683 6.2e-152 541.2 324 78.7
GSVIVG01032129001 Vitis vinifera HOM05D006111 ORTHO05D007683 8.1e-152 540.8 297 85.9
Ciclev10031806m.g Citrus clementina HOM05D006111 ORTHO05D007683 1.1e-151 540.4 373 72.9
Ah.10g038770 Amaranthus hybridus HOM05D006111 ORTHO05D007683 8.9e-151 537.3 371 72.8
Hund21484 Selenicereus undatus HOM05D006111 ORTHO05D007683 3.4e-150 535.4 369 71.3
ClCG09G004060 Citrullus lanatus HOM05D006111 ORTHO05D007683 4.4e-150 535.0 324 78.7
TWI09G1338 Tripterygium wilfordii HOM05D006111 ORTHO05D007683 4.4e-150 535.0 348 75.0
COL.COLO4_04864 Corchorus olitorius HOM05D006111 ORTHO05D007683 5.8e-150 534.6 381 70.9
HanXRQChr09g0260521 Helianthus annuus HOM05D006111 ORTHO05D007683 1.3e-149 533.5 326 77.6
SGA_v2.0_scaffold24G10670 Striga asiatica HOM05D006111 ORTHO05D007683 1.3e-149 533.5 342 76.9
THA.LOC104819080 Tarenaya hassleriana HOM05D006111 ORTHO05D007683 3.7e-149 531.9 338 75.1
CARHR082760 Cardamine hirsuta HOM05D006111 ORTHO05D007683 4.9e-149 531.6 322 78.9
Sed0027336 Sechium edule HOM05D006111 ORTHO05D007683 1.1e-148 530.4 324 77.8
AL3G19390 Arabidopsis lyrata HOM05D006111 ORTHO05D007683 3.2e-148 528.9 335 74.9
Sp3g06920 Schrenkiella parvula HOM05D006111 ORTHO05D007683 3.2e-148 528.9 356 72.5
Thhalv10020943m.g Eutrema salsugineum HOM05D006111 ORTHO05D007683 5.4e-148 528.1 330 77.0
AT3G08010 Arabidopsis thaliana HOM05D006111 ORTHO05D007683 9.2e-148 527.3 335 74.6
MELO3C023560.2 Cucumis melo HOM05D006111 ORTHO05D007683 1.6e-147 526.6 340 74.4
Carub.0003s0759 Capsella rubella HOM05D006111 ORTHO05D007683 2.1e-147 526.2 362 70.2
Lalb_Chr01g0015831 Lupinus albus HOM05D006111 ORTHO05D007683 2.1e-147 526.2 374 70.1
arahy.Tifrunner.gnm1.ann1.M31XXH Arachis hypogaea HOM05D006111 ORTHO05D007683 3.5e-147 525.4 380 69.7
arahy.Tifrunner.gnm1.ann1.YZE6TL Arachis hypogaea HOM05D006111 ORTHO05D007683 3.5e-147 525.4 380 69.7
PSO339G0604 Papaver somniferum HOM05D006111 ORTHO05D007683 6.0e-147 524.6 371 70.6
vmacro21191 Vaccinium macrocarpon HOM05D006111 ORTHO05D007683 2.3e-146 522.7 443 61.9
C03p43240 Brassica napus HOM05D006111 ORTHO05D007683 6.6e-146 521.2 304 79.9
Aa31LG5G18560 Aethionema arabicum HOM05D006111 ORTHO05D007683 1.9e-145 519.6 333 73.9
PSO384G4428 Papaver somniferum HOM05D006111 ORTHO05D007683 1.9e-145 519.6 371 69.8
Lsat_1_v5_gn_4_136121 Lactuca sativa HOM05D006111 ORTHO05D007683 1.2e-144 516.9 334 75.1
Sabra09G0044000 Salix brachista HOM05D006111 ORTHO05D007683 3.1e-143 512.3 427 63.5
ATR0332G055 Amborella trichopoda HOM05D006111 ORTHO05D007683 3.4e-142 508.8 304 76.3
unitig_749.g14328 Utricularia gibba HOM05D006111 ORTHO05D007683 7.6e-142 507.7 345 70.7
Lj3g0026579 Lotus japonicus HOM05D006111 ORTHO05D007683 1.7e-141 506.5 331 72.2
Ca_14461_v3 Cicer arietinum L. HOM05D006111 ORTHO05D007683 7.1e-140 501.1 347 70.6
Rhsim01G0128600 Rhododendron simsii HOM05D006111 ORTHO05D007683 2.3e-138 496.1 479 57.4
Cfa010790 Carpinus fangiana HOM05D006111 ORTHO05D007683 3.3e-137 492.3 376 67.8
Medtr3g030950 Medicago truncatula HOM05D006111 ORTHO05D007683 7.3e-137 491.1 305 76.1
VMungo1080G1123 Vigna mungo HOM05D006111 ORTHO05D007683 2.8e-136 489.2 346 70.2
Phvul.005G024500 Phaseolus vulgaris HOM05D006111 ORTHO05D007683 2.4e-135 486.1 331 71.6
Lj5C169G9 Lonicera japonica HOM05D006111 ORTHO05D007683 3.1e-135 485.7 281 79.7
Glyma.10G089700 Glycine max HOM05D006111 ORTHO05D007683 4.0e-135 485.3 303 75.6
Glyma.15G275900 Glycine max HOM05D006111 ORTHO05D007683 8.9e-135 484.2 303 75.9
HPP92_009763 Vanilla planifolia HOM05D006111 ORTHO05D007683 7.6e-134 481.1 372 65.1
Cpa.g.sc125.25 Carica papaya HOM05D006111 ORTHO05D007683 6.4e-133 478.0 404 61.4
Os02g0610800 Oryza sativa ssp. japonica HOM05D006111 ORTHO05D007683 1.6e-131 473.4 304 72.0
AUR62043480 Chenopodium quinoa HOM05D006111 ORTHO05D007683 7.8e-131 471.1 363 64.7
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 1.7e-130 469.9 314 71.7
Psat5g208360 Pisum sativum HOM05D006111 ORTHO05D007683 4.8e-128 461.8 296 74.0
Psat3g069160 Pisum sativum HOM05D006111 ORTHO05D007683 1.1e-127 460.7 296 73.6
AUR62009394 Chenopodium quinoa HOM05D006111 ORTHO05D007683 1.9e-124 449.9 368 61.1
AUR62023076 Chenopodium quinoa HOM05D006111 ORTHO05D007683 7.1e-124 448.0 363 61.7
CDE05G1285 Ceratophyllum demersum HOM05D006111 ORTHO05D007683 9.0e-119 431.0 297 70.7
Actinidia21546 Actinidia chinensis HOM05D006111 ORTHO05D007683 6.2e-112 408.3 359 61.3
BcaB03g11554 Brassica carinata HOM05D006111 ORTHO05D007683 2.3e-106 389.8 228 79.8
Haze_03183 Corylus avellana HOM05D006111 ORTHO05D007683 1.9e-105 386.7 312 65.1
Pp3c6_22710 Physcomitrium patens HOM05D006111 ORTHO05D007683 1.6e-104 383.6 324 56.5
Pp3c5_6760 Physcomitrium patens HOM05D006111 ORTHO05D007683 3.7e-104 382.5 312 58.0
Mapoly0153s0005 Marchantia polymorpha HOM05D006111 ORTHO05D007683 5.0e-101 372.1 316 55.7
A03p35610 Brassica napus HOM05D006111 ORTHO05D007683 1.6e-99 367.1 213 79.8
BraA03t12736Z Brassica rapa HOM05D006111 ORTHO05D007683 1.6e-99 367.1 213 79.8
BolC3t16593H Brassica oleracea HOM05D006111 ORTHO05D007683 3.6e-99 365.9 213 79.3
Zm00001eb246820 Zea mays HOM05D006111 ORTHO05D007683 3.7e-96 355.9 234 69.2
AagrBONN_evm.TU.Sc2ySwM_344.1799 Anthoceros agrestis HOM05D006111 ORTHO05D007683 4.8e-96 355.5 322 53.1
Medtr3g030975 Medicago truncatula HOM05D006111 ORTHO05D007683 4.2e-92 342.4 213 76.1
Actinidia20661 Actinidia chinensis HOM05D006111 ORTHO05D007683 2.0e-86 323.6 292 59.9
Gohir.A08G143600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 2.0e-86 323.6 231 68.4
SMO353G0296 Selaginella moellendorffii HOM05D006111 ORTHO05D007683 8.8e-82 308.1 290 49.3
PRCOL_00003534 Prasinoderma coloniale HOM05D006111 ORTHO05D007683 2.7e-75 286.6 304 45.4
Cre17.g702500 Chlamydomonas reinhardtii HOM05D006111 ORTHO05D007683 2.3e-74 283.5 287 47.0
TPR.G35304 Trifolium pratense HOM05D006111 ORTHO05D007683 2.0e-73 280.4 230 62.2
HPP92_009753 Vanilla planifolia HOM05D006111 ORTHO05D007683 3.3e-73 279.6 177 74.6
MCO10G268 Micromonas commoda HOM05D006111 ORTHO05D007683 7.7e-70 268.5 278 46.4
Prupe.2G016000 Prunus persica HOM05D006111 ORTHO05D007683 7.2e-68 261.9 157 80.3
QL04p008446 Quercus lobata HOM05D006111 ORTHO05D007683 7.2e-60 235.3 135 83.7
CBR_g5582 Chara braunii HOM05D006111 ORTHO05D007683 1.5e-41 174.5 161 51.6
SEGI_32608 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 1.9e-39 167.5 108 67.6
A03p35600 Brassica napus HOM05D006111 ORTHO05D007683 1.6e-38 164.5 95 81.1
HanXRQChr12g0362881 Helianthus annuus HOM05D006111 ORTHO05D007683 2.3e-34 150.6 108 66.7
CBR_g5588 Chara braunii HOM05D006111 ORTHO05D007683 6.4e-32 142.5 97 66.0
HPP92_009752 Vanilla planifolia HOM05D006111 ORTHO05D007683 7.1e-31 139.0 118 59.3
SEGI_00353 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 5.8e-25 119.4 87 63.2
Medtr8g104810 Medicago truncatula HOM05D006111 ORTHO05D007683 1.1e-20 105.1 64 71.9
C03p43260 Brassica napus HOM05D006111 ORTHO05D007683 8.4e-16 89.0 47 83.0
BolC3t16595H Brassica oleracea HOM05D006111 ORTHO05D007683 8.4e-16 89.0 47 83.0
TAR628G1549 Trochodendron aralioides HOM05D006111 ORTHO05D414729 8.4e-08 62.4 41 70.7
TPR.G36152 Trifolium pratense HOM05D006111 ORTHO05D007683 1.6e-06 58.2 48 56.2


User provided reference genes

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