Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 1.1e-158 563.1 275 100.0
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.4e-119 433.3 241 88.8
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 2.2e-101 372.9 260 75.0
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 5.4e-100 368.2 271 72.0
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.6e-88 328.9 242 71.5
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.0e-86 323.2 242 71.1
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 1.1e-60 237.7 272 46.3
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 5.4e-60 235.3 280 46.8
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 2.1e-59 233.4 282 44.7
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 9.6e-57 224.6 295 43.7
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 8.1e-56 221.5 270 45.9
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 8.1e-56 221.5 298 41.6
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.4e-55 219.9 273 46.2
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 4.0e-55 219.2 267 46.8
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 6.9e-55 218.4 270 47.4
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 5.8e-54 215.3 274 44.9
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 5.8e-54 215.3 252 44.0
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 1.3e-53 214.2 257 44.7
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 2.2e-53 213.4 270 45.2
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 2.2e-53 213.4 270 45.2
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 2.2e-53 213.4 270 45.2
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 2.9e-53 213.0 270 45.2
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 4.9e-53 212.2 306 41.2
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 8.4e-53 211.5 298 39.9
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 1.9e-52 210.3 258 44.6
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 2.4e-52 209.9 275 42.9
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 3.2e-52 209.5 308 39.9
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.6e-51 207.2 273 44.0
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 3.5e-51 206.1 277 43.0
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 6.0e-51 205.3 316 38.6
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 7.9e-51 204.9 274 43.1
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 7.9e-51 204.9 291 41.6
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 1.3e-50 204.1 266 43.2
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 2.3e-50 203.4 294 40.5
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 3.0e-50 203.0 276 43.5
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 5.1e-50 202.2 114 85.1
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.1e-49 201.1 258 45.0
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 5.6e-49 198.7 316 38.3
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 7.4e-49 198.4 263 42.6
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 1.3e-48 197.6 295 41.4
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 1.3e-48 197.6 311 38.6
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 1.6e-48 197.2 280 38.9
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 2.1e-48 196.8 335 34.6
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 2.8e-48 196.4 346 34.7
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 3.7e-48 196.1 256 41.0
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 6.2e-48 195.3 271 46.5
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 1.1e-47 194.5 355 34.1
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 2.6e-46 189.9 348 33.9
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 2.6e-46 189.9 384 32.3
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 3.4e-46 189.5 371 34.0
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 5.8e-46 188.7 272 38.6
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 1.0e-45 188.0 306 37.3
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 1.0e-45 188.0 269 39.4
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 3.8e-45 186.0 326 37.7
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 8.4e-45 184.9 371 33.2
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 2.5e-44 183.3 351 33.0
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 2.5e-44 183.3 351 33.0
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 4.2e-44 182.6 358 34.6
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 7.1e-44 181.8 330 37.9
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 1.6e-43 180.6 387 33.1
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 2.7e-43 179.9 368 34.0
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 4.6e-43 179.1 275 39.6
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 6.0e-43 178.7 373 31.1
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 6.0e-43 178.7 392 32.4
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 7.9e-43 178.3 325 36.9
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 7.9e-43 178.3 341 33.7
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 1.3e-42 177.6 255 41.2
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 1.8e-42 177.2 270 42.2
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.8e-42 177.2 325 36.0
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 5.1e-42 175.6 332 36.1
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 1.1e-41 174.5 259 36.3
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 1.9e-41 173.7 333 37.2
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 2.5e-41 173.3 275 38.2
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 7.4e-41 171.8 376 30.9
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 1.3e-40 171.0 358 33.2
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 1.3e-40 171.0 383 31.6
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 3.7e-40 169.5 358 33.2
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 3.7e-40 169.5 369 33.6
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 3.7e-40 169.5 389 31.4
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 8.2e-40 168.3 375 32.8
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 8.2e-40 168.3 375 31.7
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 8.2e-40 168.3 375 31.2
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 4.1e-39 166.0 392 32.9
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 4.1e-39 166.0 360 31.7
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 5.3e-39 165.6 374 32.4
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 6.9e-39 165.2 355 31.8
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 9.0e-39 164.9 375 31.5
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 5.9e-38 162.2 384 30.7
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 1.0e-37 161.4 387 32.3
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 2.2e-37 160.2 266 37.2
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 2.9e-37 159.8 359 32.6
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 3.8e-37 159.5 358 31.3
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 5.0e-37 159.1 375 31.2
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 5.0e-37 159.1 387 29.5
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.4e-36 157.5 395 29.9
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 1.9e-36 157.1 386 30.8
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 4.2e-36 156.0 367 31.6
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 9.3e-36 154.8 350 32.0
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 2.1e-35 153.7 372 30.6
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 2.7e-35 153.3 214 43.0
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 2.7e-35 153.3 214 43.0
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 6.1e-35 152.1 390 32.6
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 1.9e-33 147.1 384 28.9
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 1.9e-33 147.1 126 58.7
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 2.5e-33 146.7 202 42.6
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 4.3e-33 146.0 142 52.1
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 4.3e-33 146.0 126 58.7
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 2.2e-32 143.7 257 38.9
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 2.8e-32 143.3 289 35.3
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.1e-31 141.4 195 41.5
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 1.8e-31 140.6 383 30.3
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.4e-31 140.2 269 36.4
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.2e-30 137.9 195 40.5
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 1.5e-30 137.5 190 42.1
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 3.4e-30 136.3 391 27.4
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 1.7e-29 134.0 270 34.8
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.1e-28 131.3 139 48.2
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 4.2e-28 129.4 167 44.3
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 1.6e-27 127.5 126 49.2
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 6.7e-26 122.1 394 26.6
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 2.0e-25 120.6 181 40.9
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 8.2e-24 115.2 299 30.8
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 3.9e-18 96.3 302 26.5
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 2.6e-17 93.6 144 37.5
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 2.8e-16 90.1 324 25.9
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.8e-15 87.4 107 41.1
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.6e-14 84.3 109 41.3
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 4.5e-14 82.8 104 41.3
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 5.9e-14 82.4 141 36.9
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 5.9e-14 82.4 168 33.9
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 2.9e-13 80.1 102 41.2
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 1.1e-12 78.2 98 40.8
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 2.1e-11 73.9 105 38.1
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 2.1e-11 73.9 114 36.8
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 2.7e-11 73.6 128 35.9
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 3.6e-11 73.2 145 33.8
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 6.1e-11 72.4 114 36.8
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 6.1e-11 72.4 105 37.1
Sopen03g023610 Solanum pennellii HOM05D005167 ORTHO05D006312 1.0e-10 71.6 79 51.9
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 5.7e-09 65.9 138 31.2
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 1.3e-08 64.7 169 31.4
Nn2g11162 Nelumbo nucifera HOM05D000080 ORTHO05D000053 3.7e-08 63.2 42 64.3
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 5.3e-07 59.3 126 34.1
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 2.0e-06 57.4 80 36.2


User provided reference genes

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